| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009I07 | Sequence | 485 | 000190 (3) | ref|XP_009776316.1| | 2e-56 | PREDICTED: putative proline--tRNA ligase C19C7.06 [Nicotiana sylvestris] ref|XP | 127 | 001051 (4) | |||
| JMFF033H09 | Sequence | 522 | 000190 (3) | ref|XP_009776316.1| | 1e-63 | PREDICTED: putative proline--tRNA ligase C19C7.06 [Nicotiana sylvestris] ref|XP | 730 | 001051 (4) | ref|XP_009600189.1| | 6e-76 | PREDICTED: putative proline--tRNA ligase C19C7.06 isoform X3 [Nicotiana tomento |
| JMFF042A08 | Sequence | 635 | 001051 (4) | ref|XP_009776316.1| | 2e-80 | PREDICTED: putative proline--tRNA ligase C19C7.06 [Nicotiana sylvestris] ref|XP | 213 | 023390 | |||
| JMSF045L14 | Sequence | 781 | 000190 (3) | ref|XP_009776316.1| | 5e-134 | PREDICTED: putative proline--tRNA ligase C19C7.06 [Nicotiana sylvestris] ref|XP | 790 | 001051 (4) | ref|XP_009600189.1| | 8e-102 | PREDICTED: putative proline--tRNA ligase C19C7.06 isoform X3 [Nicotiana tomento |
This contig is upended
. : . : . : . : . : . :
rJMSF045L14+ CGTGCGGAGGCGGACTTGAGAGATAACTATTCACCTGGGTGG
____________________________________________________________
consensus CGTGCGGAGGCGGACTTGAGAGATAACTATTCACCTGGGTGG
. : . : . : . : . : . :
JMFF042A08- CTCTTAGGATTGAAATAGGACCCAAAGAT
rJMSF045L14+ AAATATTCTAACTGGGAAATGAAGGGGGTTCCTCTTAGGATTGAAATAGGACCCAGAGAC
____________________________________________________________
consensus AAATATTCTAACTGGGAAATGAAGGGGGTTCCTCTTAGGATTGAAATAGGACCCAGAGAT
. : . : . : . : . : . :
JMFF042A08- CTTGAAAAAAACCAGGTAAGAGCTGTCAGGCGTGACACTGGCTCTAAAGATGATATCCCA
rJMSF045L14+ CTTGACAATAACCAGGTAAGAGCTGTGAGGCGTGACAATGGTGCTAAAACCGACATTCCC
rJMFF033H09+ AACCAGGTAAGAGCTGTGAGGCGTGACAATGGTGCTAAAACCGACATTCCC
____________________________________________________________
consensus CTTGACAATAACCAGGTAAGAGCTGTGAGGCGTGACAATGGTGCTAAAACCGACATTCCC
. : . : . : . : . : . :
JMFF042A08- ATGGATAGCATAGCTGAACAAGTAAAAGACTTGCTCGCCACTATTCAACAAAATCTCTTT
rJMSF045L14+ ATGGCTAACATAGTTGAACAAGTAAAAGATATGCTCTCTACTATTCAACAAAATCTCTTT
rJMFF033H09+ ATGGCTAACATAGTTGAACAAGTAAAAGATATGCTCTCTACTATTCAACAAAATCTCTTT
____________________________________________________________
consensus ATGGCTAACATAGTTGAACAAGTAAAAGATATGCTCTCTACTATTCAACAAAATCTCTTT
. : . : . : . : . : . :
JMFF042A08- GATGTCGCAAAACAAAAACGAGATGCCTGCGTCCAGGTTGTGAAAACCTGGGACGAGTTT
rJMSF045L14+ GATGTTGCAAAACAAAAGCGAGAAGCCTGTGTCCAGATTGTGAAAACCTGGGATGAATTT
rJMFF033H09+ GATGTTGCAAAACAAAAGCGAGAAGCCTGTGTCCAGATTGTGAAAACCTGGGATGAATTT
____________________________________________________________
consensus GATGTTGCAAAACAAAAGCGAGAAGCCTGTGTCCAGATTGTGAAAACCTGGGATGAATTT
. : . : . : . : . : . :
JMFF042A08- GTGAAAGCTCTGAACCAAAAGAAGTTGGTCTTGGCTCCGTGGTGTGATGAAGAGGATGTT
rJMSF045L14+ GTGAATGCTCTGAATGGAAAGAAGTTGGTCTTGGCTCCTTGGTGTGATGAAGAGGATGTT
rJMFF033H09+ GTGAATGCTCTGAATGGAAAGAAGTTGGTCTTGGCTCCTTGGTGTGATGAAGAGGATGTT
____________________________________________________________
consensus GTGAATGCTCTGAATGGAAAGAAGTTGGTCTTGGCTCCTTGGTGTGATGAAGAGGATGTT
. : . : . : . : . : . :
JMFF042A08- GAGAAGGATGTGAAGACACGGACGAAAGGAGAGATGGGTGCAGCAAAGACGCTATGTTCT
rJMSF045L14+ GAGAAAGACGTGAAGGCACGGACTAAAGGAGAGATGGGCGCAGCAAAGACACTTTGTTCT
rJMFF033H09+ GAGAAAGACGTGAAGGCACGGACTAAAGGAGAGATGGGCGCAGCAAAGACACTTTGTTCT
____________________________________________________________
consensus GAGAAAGACGTGAAGGCACGGACTAAAGGAGAGATGGGCGCAGCAAAGACACTTTGTTCT
. : . : . : . : . : . :
JMFF042A08- CCATTCGACCAGCCTGAGCTACTAGAAGGAACCTTGTGCTTTGCCTCGGGCAAACCTGCG
rJMSF045L14+ CCATTTGACCAGCCTGAGCTGCCAGAAGGAACGCTGTGCTTTGCATCGGGCAAGCCTGCC
rJMFF033H09+ CCATTTGACCAGCCTGAGCTGCCAGAAGGAACGCTGTGCTTTGCATCGGGCAAGCCTGCC
____________________________________________________________
consensus CCATTTGACCAGCCTGAGCTGCCAGAAGGAACGCTGTGCTTTGCATCGGGCAAGCCTGCC
. : . : . : . : . : . :
JMFF042A08- AAGAAATGGACTTACTGGGGCCGAAGTTATTGATA
rJMSF045L14+ AAGAAATGGACTTACTGGGGCCGAAGTTATTGATATGTTAATTACACAATCATGATACTG
rJMFF033H09+ AAGAAATGGACTTACTGGGGCCGAAGTTATTGATATGTTAATTATACAATCATGATACTG
____________________________________________________________
consensus AAGAAATGGACTTACTGGGGCCGAAGTTATTGATATGTTAATTATACAATCATGATACTG
. : . : . : . : . : . :
rJMSF045L14+ TAATCGTCTTGGACAAGAGTATACTTTCTGTTGGCTTCAGTTTTCGTGAAATAGAAGTGA
rJMFF033H09+ TAATCGTCTTGGACAAGAGTATACTTTCTGTTGGCTTCAGTTTTCGTGAAATAGAAGTGA
____________________________________________________________
consensus TAATCGTCTTGGACAAGAGTATACTTTCTGTTGGCTTCAGTTTTCGTGAAATAGAAGTGA
. : . : . : . : . : . :
rJMSF045L14+ AGTGTCCCCATCAATTCTTACAAAGGAAATGAACTAATTTTATGACTAGAACTCTGTCAT
rJMFF033H09+ AGTGTCCCCATCAATTCTTACAAAGGAAATGAACTAATTTTATGACTAGAACTCTGTCAT
____________________________________________________________
consensus AGTGTCCCCATCAATTCTTACAAAGGAAATGAACTAATTTTATGACTAGAACTCTGTCAT
. : . : . : . : . : . :
rJMSF045L14+ TGATCACTGTTTGAACAATTCAGTTGAAGAAGTCATGTTTTCTTTTGTTCATTTGTCATT
rJMFF033H09+ TGATCACTGTTTGAACAATTCAGTTGAAGAAGTCATGTTTTCTTTTGTTCATTTGTCATT
____________________________________________________________
consensus TGATCACTGTTTGAACAATTCAGTTGAAGAAGTCATGTTTTCTTTTGTTCATTTGTCATT
. : . : . : . : . : . :
rJMSF045L14+ TTTAAAATCAGTTTCTGTATTATGATATGAGTAGGCATTTTGGAGCACATTTCAAAGACC
rJMFF033H09+ TTTAAAATCAGTTTCTGTATTATGATATGAGTAGGCATTTTGGAGCACATTTCAAAGACC
rJMFF009I07+ TTTCTGTATTATGATATGAGTAGGCATTTTGGAGCACATTTCAAAGACC
____________________________________________________________
consensus TTTAAAATCAGTTTCTGTATTATGATATGAGTAGGCATTTTGGAGCACATTTCAAAGACC
. : . : . : . : . : . :
rJMSF045L14+ CACAAGTGTTATATGGCTTTTTATGCTT
rJMFF033H09+ CACAAGTGTTATATGGCTTTTTATGCTTTGGTGGAGGAGATTATGATCTATTTATAAT
rJMFF009I07+ CACAAGTGTTATATGGCTTTTTATGCTTTGGTGGAGGAGATTATGATCTATTTATAATAT
____________________________________________________________
consensus CACAAGTGTTATATGGCTTTTTATGCTTTGGTGGAGGAGATTATGATCTATTTATAATAT