Contig 001047:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008H07Sequence596000828 (5)ref|XP_009798786.1|2e-63PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Nicotiana sylv695001047 (4)gb|EYU37037.1|8e-35hypothetical protein MIMGU_mgv1a0063811mg, partial [Erythranthe guttata]
JMSF028I05Sequence661000828 (5)ref|XP_009798786.1|5e-93PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Nicotiana sylv745001047 (4)gb|EYU37037.1|7e-52hypothetical protein MIMGU_mgv1a0063811mg, partial [Erythranthe guttata]
JMSF031M05Sequence660000828 (5)ref|XP_009798786.1|5e-31PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Nicotiana sylv664001047 (4)gb|EYU37037.1|2e-56hypothetical protein MIMGU_mgv1a0063811mg, partial [Erythranthe guttata]
JMSF034C23Sequence309000828 (5)ref|XP_009587313.1|1e-16PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Nicotiana tome524001047 (4)gb|EYU37037.1|8e-10hypothetical protein MIMGU_mgv1a0063811mg, partial [Erythranthe guttata]

Alignment

This contig is upended


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rJMSF031M05+                                                                  GTTA
                      ____________________________________________________________
consensus                                                                     GTTA
 
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rJMSF031M05+          CCAGTCGGAGATTCTACGGTCAACGTTTTGTTTGTGCCCTTTAGGATGGGCGCCGTGGAG
rJMSF028I05+                     TTCTACCGTCAACGTTTTGTTTGTGCCCTTTAGGATGGGCGCCGTGGAG
                      ____________________________________________________________
consensus             CCAGTCGGAGATTCTACGGTCAACGTTTTGTTTGTGCCCTTTAGGATGGGCGCCGTGGAG
 
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rJMSF031M05+          TCCCCGGCTGGTGGAGTCTGTGGTTNTGGGCTGCGTGCCGGTGATCATTGCTGACGCCAT
rJMSF028I05+          TCCCCGGCTGGTGGAGTCTGTGGTTCTGGGCTGCGTGCCGGTGATCATTGCTGACGCCAT
rJMFF008H07+                                    TGGGCTGCGTGCCGGTGATCATTGCTGACGCCAT
                      ____________________________________________________________
consensus             TCCCCGGCTGGTGGAGTCTGTGGTTCTGGGCTGCGTGCCGGTGATCATTGCTGACGCCAT
 
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rJMSF031M05+          CCAACTGCCGTTCCCCTCTGCCGTGCCGTGGGAGGAAATCTCCGTCACGGTGTTGGAAAA
rJMSF028I05+          CCAACTGCCGTTCCCCTCTGCCGTGCCGTGGGAGGAAATCTCCGTCACGGTGTTGGAAAA
rJMFF008H07+          CCAACTGCCGTTCCCCTCTGCCGTGCCGTGGGAGGAAATCTCCGTCACGGTGTTGGAAAA
                      ____________________________________________________________
consensus             CCAACTGCCGTTCCCCTCTGCCGTGCCGTGGGAGGAAATCTCCGTCACGGTGTTGGAAAA
 
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rJMSF031M05+          AGACGTGCCCAAGCTCGGCCCCATTCTTGAAAAAGCGGCGGCGACTAATCTCACCGCCAT
rJMSF028I05+          AGACGTGCCCAAGCTCGGCCCCATTCTTGAAAAAGCGGCGGCGACTAATCTCACCGCCAT
rJMSF034C23+                                                          TCTCACCGCCAT
rJMFF008H07+          AGACGTGCCCAAGCTCGGCCCCATTCTTGAAAAAGCGGCGGCGACTAATCTCACCGCCAT
                      ____________________________________________________________
consensus             AGACGTGCCCAAGCTCGGCCCCATTCTTGAAAAAGCGGCGGCGACTAATCTCACCGCCAT
 
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rJMSF031M05+          ACGACGGCGGCTGTGGGACCCGCGCATTCGCCGGGCCCTCCTGTTCAACGATCCGATGGT
rJMSF028I05+          ACGACGGCGGCTGTGGGACCCGCGCATTCGCCGGGCCCTCCTGTTCAACGATCCGATGGT
rJMSF034C23+          ACGACGGCGGCTGTGGGACCCGCGCATTCGCCGGGCCCTCCTGTTCAACGATCCGATGGT
rJMFF008H07+          ACGACGGCGGCTGTGGGACCCGCGCATTCGCCGGGCCCTCCTGTTCAACGATCCGATGGT
                      ____________________________________________________________
consensus             ACGACGGCGGCTGTGGGACCCGCGCATTCGCCGGGCCCTCCTGTTCAACGATCCGATGGT
 
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rJMSF031M05+          GGAAGGAGACGCCACGTGGCAGGTCCTCCTCGCCCTCACCAACAAACTCAGCCGCTCTCA
rJMSF028I05+          GGAAGGAGACGCCACGTGGCAGGTCCTCCTCGCCCTCACCAACAAACTCAGCCGCTCTCA
rJMSF034C23+          GGAAGGAGACGCCACGTGGCAGGTCCTCCTCGCCCTCACCAACAAACTCAGCCGCTCTCA
rJMFF008H07+          GGAAGGAGACGCCACGTGGCAGGTCCTCCTCGCCCTCACCAACAAACTCAGCCGCTCTCA
                      ____________________________________________________________
consensus             GGAAGGAGACGCCACGTGGCAGGTCCTCCTCGCCCTCACCAACAAACTCAGCCGCTCTCA
 
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rJMSF031M05+          CCGCAGGTCAAGGGTTTCTACCCAATAGGCAGCTGGTTACGTGGACGATTCCCATTGGGC
rJMSF028I05+          CCGCAGGTCAAGGGTTTCTACCCAATAGGCAGCTGGTTACGTGGACGATTCCCATTGGGC
rJMSF034C23+          CCGCAGGTCAAGGGTTTCTACCCAATAGGCAGCTGGTTACGTGGACGATTCCCATTGGGC
rJMFF008H07+          CCGCAGGTCAAGGGTTTCTACCCAATAGGCAGCTGGTTACGTGGACGATTCCCATTGGGC
                      ____________________________________________________________
consensus             CCGCAGGTCAAGGGTTTCTACCCAATAGGCAGCTGGTTACGTGGACGATTCCCATTGGGC
 
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rJMSF031M05+          GGTCAGCTAAGATGTACTTTAGATGACGTGGCGTGTAGGGTTTGTGATATAAAATTAAAT
rJMSF028I05+          GGTCAGCTAAGATGTACTTTAGATGACGTGGCGTGTAGGGTTTGTGATATAAAATTAAAT
rJMSF034C23+          GGTCAGCTAAGATGTACTTTAGATGACGTGGCGTGTAGGGTTTGTGATATAAAATTAAAT
rJMFF008H07+          GGTCAGCTAAGATGTACTTTAGATGACGTGGCGTGTAGGGTTTGTGATATAAAATTAAAT
                      ____________________________________________________________
consensus             GGTCAGCTAAGATGTACTTTAGATGACGTGGCGTGTAGGGTTTGTGATATAAAATTAAAT
 
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rJMSF031M05+          GGGAGACAGCTGGGATTGTAGCCGAGGGGTTATTACAGACATAGGGAAACGTGTCAGTGG
rJMSF028I05+          GGGAGACAGCTGGGATTGTAGCCGAGGGGTTATTACAGACATAGGGAAACGTGTCAGTGG
rJMSF034C23+          GGGAGACAGCTGGGATTGTAGCCGAGGGGTTATTACAGACATAGGGAAACGTGTCAGTGG
rJMFF008H07+          GGGAGACAGCTGGGATTGTAGCCGAGGGGTTATTACAGACATAGGGAAACGTGTCAGTGG
                      ____________________________________________________________
consensus             GGGAGACAGCTGGGATTGTAGCCGAGGGGTTATTACAGACATAGGGAAACGTGTCAGTGG
 
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rJMSF031M05+          GGCCCAAACGGCAGAGATATTATGGTGGCTGAGCTGGCTGGACGGGATTGGTTGGAGAAG
rJMSF028I05+          GGCCCAAACGGCAGAGATATTATGGTGGCTGAGCTGGCTGGACGGGATTGGTTGGAGAAG
rJMSF034C23+          GGCCCAAACGGCAGAGATATTATGGTGGCTGAGCTGGCTGGACGGGATTGGTTGGAGAAG
rJMFF008H07+          GGCCCAAACGGCAGAGATATTATGGTGGCTGAGCTGGCTGGACGGGATTGGTTGGAGAAG
                      ____________________________________________________________
consensus             GGCCCAAACGGCAGAGATATTATGGTGGCTGAGCTGGCTGGACGGGATTGGTTGGAGAAG
 
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rJMSF031M05+          CGGTTCGAAGGGACAGGGTGTTAATTGTTTTGTAGCGTCAC                   
rJMSF028I05+          CGGTTCGAAGGGACAGGGTGTTAATTGTTTTGTAGCGTCACATGTGAATTGGGGGAATAT
rJMSF034C23+          CGGTTCGAAGGGACAGGGTGTTAATTGTTTTGTAGCGTCACATGTGAATTGGGGGAATAT
rJMFF008H07+          CGGTTCGAAGGGACAGGGTGTTAATTGTTTTGTAGCGTCACATGTGAATTGGGGGAATAT
                      ____________________________________________________________
consensus             CGGTTCGAAGGGACAGGGTGTTAATTGTTTTGTAGCGTCACATGTGAATTGGGGGAATAT
 
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rJMSF028I05+          AAATTTTGAGAAAAATAAGAAGAGACAAGATTCGGTGCGGAGATCCACACTGTGGATTCC
rJMSF034C23+          AAATTTTGAGAAAAATAAGAAGAGACAAGATTCGGTGCGGAGATCCACACTGTGGATTCC
rJMFF008H07+          AAATTTTGAGAAAAATAAGAAGAGACAAGATTCGGTGCGGAGATCCACACTGTGGATTCC
                      ____________________________________________________________
consensus             AAATTTTGAGAAAAATAAGAAGAGACAAGATTCGGTGCGGAGATCCACACTGTGGATTCC
 
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rJMSF028I05+          AACTAGAATACGCTGTAAATAATAAAGCAAAG                            
rJMSF034C23+          AACTAGAATACGCTGTAAATAATAAAGCAAAG                            
rJMFF008H07+          AACTAGAATACGCTGTAAATAATAAAGCAAAGAAAAACTCATACAATAATTCAAATACTT
                      ____________________________________________________________
consensus             AACTAGAATACGCTGTAAATAATAAAGCAAAGAAAAACTCATACAATAATTCAAATACTT