Contig 001032:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005E03Sequence442001032 (9)emb|CDO97835.1|5e-32unnamed protein product [Coffea canephora]402001032 (9)emb|CDO97835.1|3e-32unnamed protein product [Coffea canephora]
JMFF016F20Sequence410001032 (9)emb|CDO97835.1|3e-32unnamed protein product [Coffea canephora]375001032 (9)emb|CDO97835.1|2e-32unnamed protein product [Coffea canephora]
JMFN014N02Sequence430001032 (9)emb|CDO97835.1|6e-32unnamed protein product [Coffea canephora]
JMFN034O17Sequence410001032 (9)emb|CDO97835.1|5e-32unnamed protein product [Coffea canephora]
JMFN038I07Sequence420001032 (9)emb|CDO97835.1|3e-32unnamed protein product [Coffea canephora]
JMSF031I23Sequence449001032 (9)emb|CDO97835.1|5e-32unnamed protein product [Coffea canephora]399001032 (9)emb|CDO97835.1|3e-32unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFN038I07+                                                                AAAAGAT
JMFN034O17+                                                             TTTAAAAGAT
JMFF005E03+                                                 TTTTTTTTTTCTTTTAAAAGAT
                      ____________________________________________________________
consensus                                                   TTTTTTTTTTCTTTTAAAAGAT
 
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JMFN038I07+           GGGAGAAAACATATCACAAAGTTCAACAATCTTTAAACAAGATAACAGCTAGTTTGATAA
JMFF016F20+                        TCACAAAGTTCAACAATCTTTAAACAAGATAACAGCTAGTTTGATAA
rJMSF031I23-                  ACATATCACAAAGTTCAACAATCTTTAAACAAGATAACAGCTAGTTTGATAA
JMFN034O17+           GGGAGAAAAAATATCACAAAGTTCAACAATCTTTAAACAAGATAACAGCTAGTTTGATAA
JMFF005E03+           GGGAGAAAACATATCACAAAGTTCAACAATCTTTAAACAAGATAACAGCTAGTTTGATAA
rJMFF016F20-                                                 AGATAACAGCTAGTTTGATAA
rJMFF005E03-                            AAGTTCAACAATCTTTAAACAAGATAACAGCTAGTTTGATAA
                      ____________________________________________________________
consensus             GGGAGAAAACATATCACAAAGTTCAACAATCTTTAAACAAGATAACAGCTAGTTTGATAA
 
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JMFN038I07+           TATGGAAAAACAAAACCATTAAATATCAGATATTATAATCTGTTCTTAAGGCAACTACAT
JMFF016F20+           TATGGAAAAACAAAACCATTAAATATCAGATATTATAATCTGTTCTTAAGGCAACTACAT
rJMSF031I23-          TATGGAAAAACAAAACCATTAAATATCAGATATTATAATCTGTTCTTAAGGCAACTACAT
JMFN034O17+           TATGGAAAAACAAAACCATTAAATATCAGATATTATAATCTGTTCTTAAGGCAACTACAT
JMFF005E03+           TATGGAAAAACAAAACCATTAAATATCAGATATTATAATCTGTTCTTAAGGCAACTACAT
rJMFF016F20-          TATGGAAAAACAAAACCATTAAATATCAGATATTATAATCTGTTCTTAAGGCAACTACAT
rJMFF005E03-          TATGGAAAAACAAAACCATTAAATATCAGATATTATAATCTGTTCTTAAGGCAACTACAT
                      ____________________________________________________________
consensus             TATGGAAAAACAAAACCATTAAATATCAGATATTATAATCTGTTCTTAAGGCAACTACAT
 
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JMFN038I07+           ATTGATCAAATATCAAATTGTTCTTGTTCTTGATTGCAAGGGTCTCTGGATTCTTCAGCG
JMFF016F20+           ATTGATCAAATATCAAATTGTTCTTGTTCTTGATTGCAAGGGTCTCTGGATTCTTCAGCG
rJMSF031I23-          ATTGATCAAATATCAAATTGTTCTTGTTCTTGATTGCAAGGGTCTCTGGATTCTTCAGCG
JMFN034O17+           ATTGATCAAATATCAAATTGTTCTTGTTCTTGATTGCAAGGGTCTCTGGATTCTTCAGCG
JMFF005E03+           ATTGATCAAATATCAAATTGTTCTTGTTCTTGATTGCAAGGGTCTCTGGATTCTTCAGCG
rJMFF016F20-          ATTGATCAAATATCAAATTGTTCTTGTTCTTGATTGCAAGGGTCTCTGGATTCTTCAGCG
JMSF031I23+                                                                   AGCG
JMFN014N02+                                                                   AGCG
rJMFF005E03-          ATTGATCAAATATCAAATTGTTCTTGTTCTTGATTGCAAGGGTCTCTGGATTCTTCAGCG
                      ____________________________________________________________
consensus             ATTGATCAAATATCAAATTGTTCTTGTTCTTGATTGCAAGGGTCTCTGGATTCTTCAGCG
 
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JMFN038I07+           GTACTTGATGAATCCGATTTCCTTGGCGTTGCTTCGGAAGCACTGTCTGCAGCACATAAG
JMFF016F20+           GTACTTGATGAATCCGATTTCCTTGGCGTTGCTTCGGAAGCACTGTCTGCAGCACATAAG
rJMSF031I23-          GTACTTGATGAATCCGATTTCCTTGGCGTTGCTTCGGAAGCACTGTCTGCAGCACATAAG
JMFN034O17+           GTACTTGATGAATCCGATTTCCTTGGCGTTGCTTCGGAAGCACTGTCTGCAGCACATAAG
JMFF005E03+           GTACTTGATGAATCCGATTTCCTTGGCGTTGCTTCGGAAGCACTGTCTGCAGCACATAAG
rJMFF016F20-          GTACTTGATGAATCCGATTTCCTTGGCGTTGCTTCGGAAGCACTGTCTGCAGCACATAAG
JMSF031I23+           GTACTTGATGAATCCGATTTCCTTGGCGTTGCTTCGGAAGCACTGTCTGCAGCACATAAG
JMFN014N02+           GTACTTGATGAATCCGATTTCCTTGGCGTTGCTTCGGAAGCACTGTCTGCAGCACATAAG
rJMFF005E03-          GTACTTGATGAATCCGATTTCCTTGGCGTTGCTTCGGAAGCACTGTCTGCAGCACATAAG
                      ____________________________________________________________
consensus             GTACTTGATGAATCCGATTTCCTTGGCGTTGCTTCGGAAGCACTGTCTGCAGCACATAAG
 
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JMFN038I07+           CCCATACTTTCTGATAATTCCATGAGAATTACCACAGACACGGCATGCGCGCGAGCCGGG
JMFF016F20+           CCCATACTTTCTGATAATTCCATGAGAATTACCACAGACACGGCATGCGCGCGAGCCGGG
rJMSF031I23-          CCCATACTTTCTGATAATTCCATGAGAATTACCACAGACACGGCATGCGCGCGAGCCGGG
JMFN034O17+           CCCATACTTTCTGATAATTCCATGAGAATTACCACAGACACGGCATGCGCGCGAGCCGGG
JMFF005E03+           CCCATACTTTCTGATAATTCCATGAGAATTACCACAGACACGGCATGCGCGCGAGCCGGG
rJMFF016F20-          CCCATACTTTCTGATAATTCCATGAGAATTACCACAGACACGGCATGCGCGCGAGCCGGG
JMSF031I23+           CCCATACTTTCTGATAATTCCATGAGAATTACCACAGACACGGCATGCGCGCGAGCCGGG
JMFN014N02+           CCCATACTTTCTGATAATTCCATGAGAATTACCACAGACACGGCATGCGCGCGAGCCGGG
rJMFF005E03-          CCCATACTTTCTGATAATTCCATGAGAATTACCACAGACACGGCATGCGCGCGAGCCGGG
                      ____________________________________________________________
consensus             CCCATACTTTCTGATAATTCCATGAGAATTACCACAGACACGGCATGCGCGCGAGCCGGG
 
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JMFN038I07+           CCCGTAGTTCTTGGGGTGAGCGTTCCAGATGTTAGAGTGTCCCATTGTTCTCTCTTCCTC
JMFF016F20+           CCCGTAGTTCTTGGGGTGAGCGTTCCAGATGTTAGAGTGTCCCATTGTTCTCTCTTCCTC
rJMSF031I23-          CCCGTAGTTCTTGGGGTGAGCGTTCCAGATGTTAGAGTGTCCCATTGTTCTCTCTTCCTC
JMFN034O17+           CCCGTAGTTCTTGGGGTGAGCGTTCCAGATGTTAGAGTGTCCCATTGTTCTCTCTTCCTC
JMFF005E03+           CCCGTAGTTCTTGGGGTGAGCGTTCCAGATGTTAGAGTGTCCCATTGTTCTCTCTTCCTC
rJMFF016F20-          CCCGTAGTTCTTGGGGTGAGCGTTCCAGATGTTAGAGTGTCCCATTGTTCTCTCTTCCTC
JMSF031I23+           CCCGTAGTTCTTGGGGTGAGCGTTCCAGATGTTAGAGTGTCCCATTGTTCTCTCTTCCTC
JMFN014N02+           CCCGTAGTTCTTGGGGTGAGCGTTCCAGATGTTAGAGTGTCCCATTGTTCTCTCTTCCTC
rJMFF005E03-          CCCGTAGTTCTTGGGGTGAGCGTTCCAGATGTTAGAGTGTCCCATTGTTCTCTCTTCCTC
                      ____________________________________________________________
consensus             CCCGTAGTTCTTGGGGTGAGCGTTCCAGATGTTAGAGTGTCCCATTGTTCTCTCTTCCTC
 
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JMFN038I07+           GTTGAGGCTTCGACCACAGAGCAGCTGCGAGAAAACCCTAACGCTTAAGAATC       
JMFF016F20+           GTTGAGGCTTCGACCACAGAGCAGCTGCGAGAAAACCCTAACGCTTAAGAATCT      
rJMSF031I23-          GTTGAGGCTTCGACCACAGAGCAGCTGCGAGAAAACCCTAACGCTTA             
JMFN034O17+           GTTGAGGCTTCGACCACAGAGCAGCTGC                                
JMFF005E03+           GTTGAGGCTTCGACCACAGAGCAGCTGCGAGAAAACCCTAACGCTTAAGAATCT      
rJMFF016F20-          GTTGAGGCTTCGACCACAGAGCAGCTGCGAGAAAACCCTAACGCTTAAGAATCT      
JMSF031I23+           GTTGAGGCTTCGACCACAGAGCAGCTGCGAGAAAACCCTAACGCTTA             
JMFN014N02+           GTTGAGGCTTCGACCACAGAGCAGCTGCGAGAAAA                         
rJMFF005E03-          GTTGAGGCTTCGACCACAGAGCAGCTGCGAGAAAACCCTAACGCTTAAGAATCTGGGGAG
                      ____________________________________________________________
consensus             GTTGAGGCTTCGACCACAGAGCAGCTGCGAGAAAACCCTAACGCTTAAGAATCTGGGGAG