| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004M18 | Sequence | 592 | 002400 (9) | ref|XP_009773747.1| | 1e-15 | PREDICTED: homeobox-leucine zipper protein HAT5-like [Nicotiana sylvestris] | 674 | 001030 (6) | ref|XP_006367068.1| | 2e-25 | PREDICTED: homeobox-leucine zipper protein HOX16-like [Solanum tuberosum] |
| JMFF037B11 | Sequence | 587 | 002400 (9) | ref|XP_009773747.1| | 7e-16 | PREDICTED: homeobox-leucine zipper protein HAT5-like [Nicotiana sylvestris] | 720 | 001030 (6) | ref|XP_009773747.1| | 4e-25 | PREDICTED: homeobox-leucine zipper protein HAT5-like [Nicotiana sylvestris] |
| JMSF008G14 | Sequence | 451 | 002400 (9) | ref|XP_006344890.1| | 155 | PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum] | 743 | 001030 (6) | ref|XP_006367068.1| | 3e-26 | PREDICTED: homeobox-leucine zipper protein HOX16-like [Solanum tuberosum] |
| JMSF041L17 | Sequence | 726 | 002400 (9) | ref|XP_006344890.1| | 205 | PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum] | 732 | 001030 (6) | ref|XP_009773747.1| | 3e-26 | PREDICTED: homeobox-leucine zipper protein HAT5-like [Nicotiana sylvestris] |
| JMSF047I09 | Sequence | 400 | 002400 (9) | 759 | 001030 (6) | ref|XP_006367068.1| | 1e-36 | PREDICTED: homeobox-leucine zipper protein HOX16-like [Solanum tuberosum] | |||
| JMSF048D22 | Sequence | 611 | 002400 (9) | 758 | 001030 (6) | ref|XP_006367068.1| | 7e-42 | PREDICTED: homeobox-leucine zipper protein HOX16-like [Solanum tuberosum] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF008G14+ AACTAAAAGCCTAAGCTGATAGTTGGATTGCACATTAATGGT
____________________________________________________________
consensus AACTAAAAGCCTAAGCTGATAGTTGGATTGCACATTAATGGT
. : . : . : . : . : . :
rJMSF048D22+ TTCTTCGCGTCACGG
rJMSF008G14+ TATATGCTCAACACAATAAGTTTAGCTTGTGTTTGTTTGCCCAGGTTCTTCGCGTCACGG
rJMSF041L17+ AGGTTCTTCGCGTCACGG
rJMFF037B11+ TTCTTCGCGTCACGG
rJMSF047I09+ TTCTTCGCGTCACGG
rJMFF004M18+ TCTTCGCGTCACGG
____________________________________________________________
consensus TATATGCTCAACACAATAAGTTTAGCTTGTGTTTGTTTGCCCAGGTTCTTCGCGTCACGG
. : . : . : . : . : . :
rJMSF048D22+ ACAAGCTAGTTGTGAAGGGTAAAGAAAAGGAAACGTTAAAGTTTCGAGATGATATCCAAC
rJMSF008G14+ ACAAGCTAGTTGTGAAGGGTAAAGAAAAGGAAACGTTAAAGTTTCGAGATGATATCCAAC
rJMSF041L17+ ACAAGCTAGTTGTGAAGGGTAAAGAAAAGGAAACGTTAAAGTTTCGAGATGATATCCAAC
rJMFF037B11+ ACAAGCTAGTTGTGAAGGGTAAAGAAAAGGAAACGTTAAAGTTTCGAGATGATATCCAAC
rJMSF047I09+ ACAAGCTAGTTGTGAAGGGTAAAGAAAAGGAAACGTTAAAGTTTCGAGATGATATCCAAC
rJMFF004M18+ ACAAGCTAGTTGTGAAGGGTAAAGAAAAGGAAACGTTAAAGTTTCGAGATGATATCCAAC
____________________________________________________________
consensus ACAAGCTAGTTGTGAAGGGTAAAGAAAAGGAAACGTTAAAGTTTCGAGATGATATCCAAC
. : . : . : . : . : . :
rJMSF048D22+ ACCCTTTGGAAGCACTGTCGAAAGACCATATGGCTGATTCAGTTGCAGCATCATCCCCAG
rJMSF008G14+ ACCCTTTGGAAGCACTGTCGAAAGACCATATGGCTGATTCAGTTGCAGCATCATCCCCAG
rJMSF041L17+ ACCCTTTGGAAGCACTGTCGAAAGACCATATGGCTGATTCAGTTGCAGCATCATCCCCAG
rJMFF037B11+ ACCCTTTGGAAGCACTGTCGAAAGACCATATGGCTGATTCAGTTGCAGCATCATCCCCAG
rJMSF047I09+ ACCCTTTGGAAGCACTGTCGAAAGACCATATGGCTGATTCAGTTGCAGCATCATCCCCAG
rJMFF004M18+ ACCCTTTGGAAGCACTGTCGAAAGACCATATGGCTGATTCAGTTGCAGCATCATCCCCAG
____________________________________________________________
consensus ACCCTTTGGAAGCACTGTCGAAAGACCATATGGCTGATTCAGTTGCAGCATCATCCCCAG
. : . : . : . : . : . :
rJMSF048D22+ CCCTGCCTGTTAAGCTGGAAGGTACAAGCCCGAGTAAGAGCGACGTGTTGGATTCAGACA
rJMSF008G14+ CCCTGCCTGTTAAGCTGGAAGGTACAAGCCCGAGTAAGAGCGACGTGTTGGATTCAGACA
rJMSF041L17+ CCCTGCCTGTTAAGCTGGAAGGTACAAGCCCGAGTAAGAGCGACGTGTTGGATTCAGACA
rJMFF037B11+ CCCTGCCTGTTAAGCTGGAAGGTACAAGCCCGAGTAAGAGCGACGTGTTGGATTCAGACA
rJMSF047I09+ CCCTGCCTGTTAAGCTGGAAGGTACAAGCCCGAGTAAGAGCGACGTGTTGGATTCAGACA
rJMFF004M18+ CCCTGCCTGTTAAGCTGGAAGGTACAAGCCCGAGTAAGAGCGACGTGTTGGATTCAGACA
____________________________________________________________
consensus CCCTGCCTGTTAAGCTGGAAGGTACAAGCCCGAGTAAGAGCGACGTGTTGGATTCAGACA
. : . : . : . : . : . :
rJMSF048D22+ GCCCTCGCTACACCGATGGGGTTCACTCGTCTTTTCCCGACATCGGGGGGGACTCTTCCT
rJMSF008G14+ GCCCTCGCTACACCGATGGGGTTCACTCGTCTTTTCCCGACATCGGGGGGGACTCTTCCT
rJMSF041L17+ GCCCTCGCTACACCGATGGGGTTCACTCGTCTTTTCCCGACATCGGGGGGGACTCTTCCT
rJMFF037B11+ GCCCTCGCTACACCGATGGGGTTCACTCGTCTTTTCCCGACATCGGGGGGGACTCTTCCT
rJMSF047I09+ GCCCTCGCTACACCGATGGGGTTCACTCGTCTTTTCCCGACATCGGGGGGGACTCTTCCT
rJMFF004M18+ GCCCTCGCTACACCGATGGGGTTCACTCGTCTTTTCCCGACATCGGGGGGGACTCTTCCT
____________________________________________________________
consensus GCCCTCGCTACACCGATGGGGTTCACTCGTCTTTTCCCGACATCGGGGGGGACTCTTCCT
. : . : . : . : . : . :
rJMSF048D22+ ATGTCTTCGAGCCAGAGCGGTCAGACTCAGATTTATCACAAGACGAAGACGATAGGTTCA
rJMSF008G14+ ATGTCTTCGAGCCAGAGCGGTCAGACTCAGATTTATCACAAGACGAAGACGATAGGTTCA
rJMSF041L17+ ATGTCTTCGAGCCAGAGCGGTCAGACTCAGATTTATCACAAGACGAAGACGATAGGTTCA
rJMFF037B11+ ATGTCTTCGAGCCAGAGCGGTCAGACTCAGATTTATCACAAGACGAAGACGATAGGTTCA
rJMSF047I09+ ATGTCTTCGAGCCAGAGCGGTCAGACTCAGATTTATCACAAGACGAAGACGATAGGTTCA
rJMFF004M18+ ATGTCTTCGAGCCAGAGCGGTCAGACTCAGATTTATCACAAGACGAAGACGATAGGTTCA
____________________________________________________________
consensus ATGTCTTCGAGCCAGAGCGGTCAGACTCAGATTTATCACAAGACGAAGACGATAGGTTCA
. : . : . : . : . : . :
rJMSF048D22+ GCAAGAATTTCATGGCTGCTTCGGAGTCGTTGTCTGTGTTCCCAAAGGTCAGAGAAGATC
rJMSF008G14+ GCAAGAATTTCATGGCTGCTTCGGAGTCGTTGTCTGTGTTCCCAAAGGTCAGAGAAGATC
rJMSF041L17+ GCAAGAATTTCATGGCTGCTTCGGAGTCGTTGTCTGTGTTCCCAAAGGTCAGAGAAGATC
rJMFF037B11+ GCAAGAATTTCATGGCTGCTTCGGAGTCGTTGTCTGTGTTCCCAAAGGTCAGAGAAGATC
rJMSF047I09+ GCAAGAATTTCATGGCTGCTTCGGAGTCGTTGTCTGTGTTCCCAAAGGTCAGAGAAGATC
rJMFF004M18+ GCAAGAATTTCATGGCTGCTTCGGAGTCGTTGTCTGTGTTCCCAAAGGTCAGAGAAGATC
____________________________________________________________
consensus GCAAGAATTTCATGGCTGCTTCGGAGTCGTTGTCTGTGTTCCCAAAGGTCAGAGAAGATC
. : . : . : . : . : . :
rJMSF048D22+ ATTACCCCATAGCCATACCTCCCACCAATTCATCCTTGTATGGATTCCCAGTTGAAGATC
rJMSF008G14+ ATTACCCCATAGCCATACCTCCCACCAATTCATCCTTGTATGGATTCCCAGTTGAAGATC
rJMSF041L17+ ATTACCCCATAGCCATACCTCCCACCAATTCATCCTTGTATGGATTCCCAGTTGAAGATC
rJMFF037B11+ ATTACCCCATAGCCATACCTCCCACCAATTCATCCTTGTATGGATTCCCAGTTGAAGATC
rJMSF047I09+ ATTACCCCATAGCCATACCTCCCACCAATTCATCCTTGTATGGATTCCCAGTTGAAGATC
rJMFF004M18+ ATTACCCCATAGCCATACCTCCCACCAATTCATCCTTGTATGGATTCCCAGTTGAAGATC
____________________________________________________________
consensus ATTACCCCATAGCCATACCTCCCACCAATTCATCCTTGTATGGATTCCCAGTTGAAGATC
. : . : . : . : . : . :
rJMSF048D22+ AAACCTTTGGGTTTTGGCCTTATTAAGCTGCAATTACTCGTTGACTTGGTGAATTTATGG
rJMSF008G14+ AAACCTTTGGGTTTTGGCCTTATTAAGCTGCAATTACTCGTTGACTTGGTGGATTTATGG
rJMSF041L17+ AAACCTTTGGGTTTTGGCCTTATTAAGCTGCAATTACTCGTTGACTTGGTGGATTTATGG
rJMFF037B11+ AAACCTTTGGGTTTTGGCCTTATTAAGCTGCAATTACTCGTTGACTTGGTGAATTTATGG
rJMSF047I09+ AAACCTTTGGGTTTTGGCCTTATTAAGCTGCAATTACTCGTTGACTTGGTGAATTTATGG
rJMFF004M18+ AAACCTTTGGGTTTTGGCCTTATTAAGCTGCAATTACTCGTTGACTTGGTGAATTTATGG
____________________________________________________________
consensus AAACCTTTGGGTTTTGGCCTTATTAAGCTGCAATTACTCGTTGACTTGGTGAATTTATGG
. : . : . : . : . : . :
rJMSF048D22+ CCTGCAGGGACATAGGTGATGTTCCTTATAAAATGGCACCAAGTTAGCAAGTAATACCAT
rJMSF008G14+ CCTGCAGGGACATAGGTGATGTTCCTTATAAAATGGCACCAAGTTAGCAAGTAATACCAT
rJMSF041L17+ CCTGCAGGGACATAGGTGATGTTCCTTATAAAATGGCACCAAGTTAGCAAGTAATACCAT
rJMFF037B11+ CCTGCAGGGACATAGGTGATGTTCCTTATAAAATGGCACCAAGTTAGCAAGTAATACCAT
rJMSF047I09+ CCTGCAGGGACATAGGTGATGTTCCTTATAAAATGGCACCAAGTTAGCAAGTAATACCAT
rJMFF004M18+ CCTGCAGGGACATAGGTGATGTTCCTTATAAAATGGCACCAAGTTAGCAAGTAATACCAT
____________________________________________________________
consensus CCTGCAGGGACATAGGTGATGTTCCTTATAAAATGGCACCAAGTTAGCAAGTAATACCAT
. : . : . : . : . : . :
rJMSF048D22+ ACTGTCCACACTGTCCATTCATGTATTATTGTATATTAGTTTGTGTCAACAGCAATAAAA
rJMSF008G14+ ACTGTCCACACTGTCCATTCATGTATTATTGTATATTAGTTTGTGTCAACAGCAATAAAA
rJMSF041L17+ ACTGTCCACACTGTCCATTCATGTATTATTGTATATTAGTTTGTGTCAACAGCAATAAAA
rJMFF037B11+ ACTGTCCACACTGTCCATTCATGTATTATTGTATATTAGTTTGTGTCAACAGCAATAAAA
rJMSF047I09+ ACTGTCCACACTGTCCATTCATGTATTATTGTATATTAGTTTGTGTCAACAGCAATAAAA
rJMFF004M18+ ACTGTCCACACTGTCCATTCATGTATTATTGTATATTAGTTTGTGTCAACAGCAATAAAA
____________________________________________________________
consensus ACTGTCCACACTGTCCATTCATGTATTATTGTATATTAGTTTGTGTCAACAGCAATAAAA
. : . : . : . : . : . :
rJMSF048D22+ AATCCAATCAGGAATTGGAAACCATGTAATGTTACACTT
rJMSF008G14+ AATCCAATCAGGAATTGGAAACCATGTAATGTTACACTT
rJMSF041L17+ AATCCAATCAGGAATTGGAAACCATGTAATGTTACACTT
rJMFF037B11+ AATCCAATCAGGAATTGGAAACCATGTAATGTTACACTTTGTAGTAGTACTGCTTTCAA
rJMSF047I09+ AATCCAATCAGGAATTGGAAACCATGTAATGTTACACTTTGTAGTAGTACTGCTTTCAA
rJMFF004M18+ AATCCAATCAGGAATTGGAAACCATGTAATGTTACACTTTGTAGTAGTACTGCTTTCAAT
____________________________________________________________
consensus AATCCAATCAGGAATTGGAAACCATGTAATGTTACACTTTGTAGTAGTACTGCTTTCAAT