Contig 001027:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020I16+                                         CCGATATTGAAAAGGAAAGGTATGGGCGA
                      ____________________________________________________________
consensus                                            CCGATATTGAAAAGGAAAGGTATGGGCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020I16+          GTTGAGGTCCAAAAAGCGAGTTAGATTTGATCCTAGCTTTGTGGATGAATCTGAAGATGC
rJMFF004F01+                                                              GAAGATGC
                      ____________________________________________________________
consensus             GTTGAGGTCCAAAAAGCGAGTTAGATTTGATCCTAGCTTTGTGGATGAATCTGAAGATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020I16+          TCCAGAAAGAGCCCCCTGTATTTTCTGATGCTTCTTCAACCGAGGACACCAAGGCACGAG
rJMFF004F01+          TCCAGAAAGAGCCCCCTGTATTTTCTGATGCTTCTTCAACCGAGGACACCAAGGCACGAG
                      ____________________________________________________________
consensus             TCCAGAAAGAGCCCCCTGTATTTTCTGATGCTTCTTCAACCGAGGACACCAAGGCACGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020I16+          ATTGTGACTCCTTGTTTGATGAAAACAAACCTAAGGTTCCTGATCATCTTATCAATCCTT
rJMFF004F01+          ATTGTGACTCCTTGTTTGATGAAAACAAACCTAAGGTTCCTGATCATCTTATCAATCCTT
                      ____________________________________________________________
consensus             ATTGTGACTCCTTGTTTGATGAAAACAAACCTAAGGTTCCTGATCATCTTATCAATCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020I16+          CAAAATACACCCGCTACAGTTTAGAGTCATGTGGTGAGGTTGATGACGAGTCCAATAGTC
rJMFF004F01+          CAAAATACACCCGCTACAGTTTAGAGTCATGTGGTGAGGTTGATGACGAGTCCAATAGTC
                      ____________________________________________________________
consensus             CAAAATACACCCGCTACAGTTTAGAGTCATGTGGTGAGGTTGATGACGAGTCCAATAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020I16+          TAGTGTGTAGGTATGTACTTGAGGAGGTGAAAAAGTGGAAGAACAATCTGCAGACTGAGG
rJMFF004F01+          TAGTGTGTAGGTATGTACTTGAGGAGGTGAAAAAGTGGAAGAACAATCTGCAGACTGAGG
                      ____________________________________________________________
consensus             TAGTGTGTAGGTATGTACTTGAGGAGGTGAAAAAGTGGAAGAACAATCTGCAGACTGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020I16+          AACCATCTAATACCCTTCCTAAATCTGTAAGTTTTGTCCCTAAGAAGAAGACTAACAGTG
rJMFF004F01+          AACCATCTAATACCCTTCCTAAATCTGTAAGTTTTGTCCCTAAGAAGAAGACTAACAGTG
                      ____________________________________________________________
consensus             AACCATCTAATACCCTTCCTAAATCTGTAAGTTTTGTCCCTAAGAAGAAGACTAACAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020I16+          CCATAGTAATGGAGGATGCCAGCGAAGATGCTTCTAAAGAAATCCCGAATCAACAGAGCA
rJMFF004F01+          CCATAGTAATGGAGGATGCCAGCGAAGATGCTTCTAAAGAAATCCCGAATCAACAGAGCA
                      ____________________________________________________________
consensus             CCATAGTAATGGAGGATGCCAGCGAAGATGCTTCTAAAGAAATCCCGAATCAACAGAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020I16+          TTCCAGTAGGCATTGCTGCTTGGGAGGCACAGAGAGGTGACAGTGCACCAGAAGAAGATG
rJMFF004F01+          TTCCAGTAGGCATTGCTGCTTGGGAGGCACAGAGAGGTGACAGTGCACCAGAAGAAGATG
                      ____________________________________________________________
consensus             TTCCAGTAGGCATTGCTGCTTGGGAGGCACAGAGAGGTGACAGTGCACCAGAAGAAGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020I16+          ATATGCAAATGGATACATCCGAAGATACTGGTATTTGTAAACCAGATCGCCACTACCGAA
rJMFF004F01+          ATATGCAAATGGATACATCCGAAGATACTGGTATTTGTAAACCAGATCGCCACTACCGAA
                      ____________________________________________________________
consensus             ATATGCAAATGGATACATCCGAAGATACTGGTATTTGTAAACCAGATCGCCACTACCGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020I16+          GCAAGTCAAGGGTGGAAGATCCTGTTACTTGAACTTCTTAATGGGTTCTTACAATGTCAA
rJMFF004F01+          GCAAGTCAAGGGTGGAAGATCCTGTTACTTGAACTTCTTAATGGGTTCTTACAATGTCAA
                      ____________________________________________________________
consensus             GCAAGTCAAGGGTGGAAGATCCTGTTACTTGAACTTCTTAATGGGTTCTTACAATGTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020I16+          GTGGTTTGCAAAAGAATGTAGAGTGTGTACTTTCAACTCAAAAATGTCTCAAATCTTGGC
rJMFF004F01+          GTGGTTTGCAAAAGAATGTAGAGTGTGTACTTTCAACTCAAAAATGTCTCAAATCTTGGC
                      ____________________________________________________________
consensus             GTGGTTTGCAAAAGAATGTAGAGTGTGTACTTTCAACTCAAAAATGTCTCAAATCTTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020I16+          TATCTTTATTTCCTTTTTCTTTTTGTCTGCACTTGTGTTTACCTTGTGTTAATATTAGCA
rJMFF004F01+          TATCTTTATTTCCTTTTTCTTTTTGTCTGCACTTGTGTTTACCTTGTGTTAATATTAGCA
                      ____________________________________________________________
consensus             TATCTTTATTTCCTTTTTCTTTTTGTCTGCACTTGTGTTTACCTTGTGTTAATATTAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020I16+          TCACAA                                                      
rJMFF004F01+          TCACAATACAAGGTTTTTATATGATATATCATATGTATGTCTTTCATACTAGTTATATAG
                      ____________________________________________________________
consensus             TCACAATACAAGGTTTTTATATGATATATCATATGTATGTCTTTCATACTAGTTATATAG