clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF001A18 | Sequence | 384 | 001605 (4) | 758 | 001024 (4) | gb|KDO75058.1| | 2e-96 | hypothetical protein CISIN_1g0164722mg [Citrus sinensis] gb|KDO75059.1| hypothet | |||
JMFF003K09 | Sequence | 419 | 001605 (4) | ref|XP_006342737.1| | 3e-09 | PREDICTED: tubby-like F-box protein 6-like isoform X1 [Solanum tuberosum] | 757 | 001024 (4) | gb|KDO75058.1| | 4e-97 | hypothetical protein CISIN_1g0164722mg [Citrus sinensis] gb|KDO75059.1| hypothet |
JMFF011J17 | Sequence | 468 | 001605 (4) | ref|XP_006342738.1| | 2e-14 | PREDICTED: tubby-like F-box protein 6-like isoform X2 [Solanum tuberosum] | 735 | 001024 (4) | gb|KDO75058.1| | 3e-97 | hypothetical protein CISIN_1g0164722mg [Citrus sinensis] gb|KDO75059.1| hypothet |
JMFN037C09 | Sequence | 543 | 001024 (4) | gb|KDO75058.1| | 1e-89 | hypothetical protein CISIN_1g0164722mg [Citrus sinensis] gb|KDO75059.1| hypothet |
This contig is upended
. : . : . : . : . : . :
JMFN037C09- TCAAAGGCAAGTGGCAATTATCTAGGAAAA
____________________________________________________________
consensus TCAAAGGCAAGTGGCAATTATCTAGGAAAA
. : . : . : . : . : . :
JMFN037C09- TTGAGGTCGAATTTTCTCGGAACCAAGTTTACAGTGTATGATGCTTCACCGCCCGTTACA
____________________________________________________________
consensus TTGAGGTCGAATTTTCTCGGAACCAAGTTTACAGTGTATGATGCTTCACCGCCCGTTACA
. : . : . : . : . : . :
JMFN037C09- AGAGCTAAAATGGTGAGAAGTCACAATACTAGCCCGGGGGCCTTGAAACATATCTT-CCC
rJMFF001A18+ ACAATACTAGCCCGGGGGCCTTGAAACATATCTTCCCC
rJMFF011J17+ ACTAGCCCGGGGGCCTTGAAACATATTTT-CCC
rJMFF003K09+ ACTAGCCCGGGGGCCTTGAAACATATCTT-CCC
____________________________________________________________
consensus AGAGCTAAAATGGTGAGAAGTCACAATACTAGCCCGGGGGCCTTGAAACATATCTT-CCC
. : . : . : . : . : . :
JMFN037C09- TAGAGTACCCGTTGGAAACTATGAAGTTGCTTACATTTCATATGAGTTGAATGGACTTGC
rJMFF001A18+ TAGAGTACCCGTTGGAAACTATGAAGTTGCTCACATTTCATATGAGTTGAATGGACTTGC
rJMFF011J17+ TAGAGTACCCGTTGGAAACTATGAAGTTGCTCACATTTCATATGAGTTGAATGGACTTGC
rJMFF003K09+ TAGAGTACCCGTTGGAAACTATGAAGTTGCTCACATTTCATATGAGTTGAATGGACTTGC
____________________________________________________________
consensus TAGAGTACCCGTTGGAAACTATGAAGTTGCTCACATTTCATATGAGTTGAATGGACTTGC
. : . : . : . : . : . :
JMFN037C09- AGCCAGGGGACCACGGAAAATGCAGTGTGTTATGGATACTATCCCCGCATCTTCGATTAA
rJMFF001A18+ AGCCAGGGGACCACGGAAAATGCAGTGTGTTATGGATACTATCCCCGCATCTTCGATTAA
rJMFF011J17+ AGCCAGGGGACCACGGAAAATGCAGTGTGTTATGGATACTATCCCCGCATCTTCGATTAA
rJMFF003K09+ AGCCAGGGGACCACGGAAAATGCAGTGTGTTATGGATACTATCCCCGCATCTTCGATTAA
____________________________________________________________
consensus AGCCAGGGGACCACGGAAAATGCAGTGTGTTATGGATACTATCCCCGCATCTTCGATTAA
. : . : . : . : . : . :
JMFN037C09- ACCGGGAGGTGTAGCTCCCACGCAGACCGACTTTCCAATTTCGAGCGGTGATTCGTTTCC
rJMFF001A18+ ACCGGGAGGTGTAGCTCCCACGCAGACCGACTTTCCAATTTCGAGCGGTGATTCGTTTCC
rJMFF011J17+ ACCGGGAGGTGTAGCTCCCACGCAGACCGACTTTCCAATTTCGAGCGGTGATTCGTTTCC
rJMFF003K09+ ACCGGGAGGTGTAGCTCCCACGCAGACCGACTTTCCAATTTCGAGCGGTGATTCGTTTCC
____________________________________________________________
consensus ACCGGGAGGTGTAGCTCCCACGCAGACCGACTTTCCAATTTCGAGCGGTGATTCGTTTCC
. : . : . : . : . : . :
JMFN037C09- AACAATACCCTTTTTCAGATCAAAATCAATGTGCTCGGAGAAACTCCTGTCCAGATCATC
rJMFF001A18+ AACAATACCCTTTTTCAGATCAAAATCAATGTGCTCGGAGAAACTCCTGTCCAGATCATC
rJMFF011J17+ AACAATACCCTTTTTCAGATCAAAATCAATGTGCTCGGAGAAACTCCTGTCCAGATCATC
rJMFF003K09+ AACAATACCCTTTTTCAGATCAAAATCAATGTGCTCGGAGAAACTCCTGTCCAGATCATC
____________________________________________________________
consensus AACAATACCCTTTTTCAGATCAAAATCAATGTGCTCGGAGAAACTCCTGTCCAGATCATC
. : . : . : . : . : . :
JMFN037C09- GGAGAGGCAAACGGATGGATCGCTAGTTTTAAGAAACAAGGCTCCCAGATGGCACGAGCA
rJMFF001A18+ GGAGAGGCAAACGGATGGATCGCTAGTTTTAAGAAACAAGGCTCCCAGATGGCACGAGCA
rJMFF011J17+ GGAGAGGCAAACGGATGGATCGCTAGTTTTAAGAAACAAGGCTCCCAGATGGCACGAGCA
rJMFF003K09+ GGAGAGGCAAACGGATGGATCGCTAGTTTTAAGAAACAAGGCTCCCAGATGGCACGAGCA
____________________________________________________________
consensus GGAGAGGCAAACGGATGGATCGCTAGTTTTAAGAAACAAGGCTCCCAGATGGCACGAGCA
. : . : . : . : . : . :
JMFN037C09- GCTCCAGTGCTGGTGCCTAAACTTTCATGGACGGGTAACCGTTGCTTCGGTGAAAAACTT
rJMFF001A18+ GCTCCAGTGCTGGTGCCTAAACTTTCATGGACGGGTAACCGTTGCTTCGGTGAAAAACTT
rJMFF011J17+ GCTCCAGTGCTGGTGCCTAAACTTTCATGGACGGGTAACCGTTGCTTCGGTGAAAAACTT
rJMFF003K09+ GCTCCAGTGCTGGTGCCTAAACTTTCATGGACGGGTAACCGTTGCTTCGGTGAAAAACTT
____________________________________________________________
consensus GCTCCAGTGCTGGTGCCTAAACTTTCATGGACGGGTAACCGTTGCTTCGGTGAAAAACTT
. : . : . : . : . : . :
JMFN037C09- TCAGTTGGTAGCTTCTCCCGAGAATGGGGTGGCG
rJMFF001A18+ TCAGTTGGTAGCTTCTCCCGAGAATGGGGTGGCGGTGCCCGAATGTGAGAAGGTCATTCT
rJMFF011J17+ TCAGTTGGTAGCTTCTCCCGAGAATGGGGTGGCGGTGCCCGAATGTGAGAAGGTCATTCT
rJMFF003K09+ TCAGTTGGTAGCTTCTCCCGAGAATGGGGTGGCGGTGCCCGAATGTGAGAAGGTCATTCT
____________________________________________________________
consensus TCAGTTGGTAGCTTCTCCCGAGAATGGGGTGGCGGTGCCCGAATGTGAGAAGGTCATTCT
. : . : . : . : . : . :
rJMFF001A18+ ACAGTTCGGGAAAGTAGCGAAGGATGTCTTCACAATGGATTTCCGCTACCCGTTATCGCC
rJMFF011J17+ ACAGTTCGGGAAAGTAGCGAAGGATGTCTTCACAATGGATTTCCGCTACCCGTTATCGCC
rJMFF003K09+ ACAGTTCGGGAAAGTAGCGAAGGATGTCTTCACAATGGATTTCCGCTACCCGTTATCGCC
____________________________________________________________
consensus ACAGTTCGGGAAAGTAGCGAAGGATGTCTTCACAATGGATTTCCGCTACCCGTTATCGCC
. : . : . : . : . : . :
rJMFF001A18+ ATTTCTTGCATTTGCCATCTGTCTTAGCAACTTCGACTCCAAGTTAGCTTGTGAATAACG
rJMFF011J17+ ATTTCTTGCATTTGCCATCTGTCTTAGCAACTTCGACTCCAAGTTAGCTTGTGAATAACG
rJMFF003K09+ ATTTCTTGCATTTGCCATCTGTCTTAGCAACTTCGACTCCAAGTTAGCTTGTGAATAACG
____________________________________________________________
consensus ATTTCTTGCATTTGCCATCTGTCTTAGCAACTTCGACTCCAAGTTAGCTTGTGAATAACG
. : . : . : . : . : . :
rJMFF001A18+ AGGATTGGGAGGGGTAAAGATGAGATTGTATCACTCTGCTATTATCTTCTGCACTGGACT
rJMFF011J17+ AGGATTGGGAGGGGTAAAGATGAGATTGTATCACTCTGCTATTATCTTCTGCACTGGACT
rJMFF003K09+ AGGATTGGGAGGGGTAAAGATGAGATTGTATCACTCTGCTATTATCTTCTGCACTGGACT
____________________________________________________________
consensus AGGATTGGGAGGGGTAAAGATGAGATTGTATCACTCTGCTATTATCTTCTGCACTGGACT
. : . : . : . : . : . :
rJMFF001A18+ TCTTAATAATGGTGGAAACTGGAAAGTAGGGTAACCTTTACTACTGTAAATTCTTCCTTG
rJMFF011J17+ TCTTAATAATGGTGGAAACTGGAAAGTAGGGTAACCTTTACTACTGTAAATTCTTCCTTG
rJMFF003K09+ TCTTAATAATGGTGGAAACTGGAAAGTAGGGTAACCTTTACTACTGTAAATTCTTCCTTG
____________________________________________________________
consensus TCTTAATAATGGTGGAAACTGGAAAGTAGGGTAACCTTTACTACTGTAAATTCTTCCTTG
. : . : . : . : . : . :
rJMFF001A18+ TATATATACTCTGCTCCCCTTTTTCTT
rJMFF011J17+ TATATATACTCTGCTCCCCTTTTTCTT
rJMFF003K09+ TATATATACTCTGCTCCCCTTTTTCTTTGAAGTTGTGAAGATAATTTTCGGTTTCGCCAC
____________________________________________________________
consensus TATATATACTCTGCTCCCCTTTTTCTTTGAAGTTGTGAAGATAATTTTCGGTTTCGCCAC