Contig 001023:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP015E04Sequence550001023 (5)emb|CDP02247.1|4e-08unnamed protein product [Coffea canephora]
JMFF003A21Sequence764001023 (5)emb|CDP02247.1|3e-18unnamed protein product [Coffea canephora]
JMSF009A11Sequence177006410 (5)753001023 (5)emb|CDP02247.1|2e-17unnamed protein product [Coffea canephora]
JMSF019B08Sequence412006410 (5)ref|XP_011098647.1|3e-36PREDICTED: KH domain-containing protein At4g18375 [Sesamum indicum] ref|XP_01109782001023 (5)emb|CDP02247.1|4e-25unnamed protein product [Coffea canephora]
JMSF047D24Sequence695006410 (5)ref|XP_011098647.1|8e-76PREDICTED: KH domain-containing protein At4g18375 [Sesamum indicum] ref|XP_01109702001023 (5)emb|CDP02247.1|4e-07unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF019B08+ CAGCTGAAGATGATGAGATGGTGCAGANTT
                      ____________________________________________________________
consensus CAGCTGAAGATGATGAGATGGTGCAGANTT
 
. : . : . : . : . : . :
rJMSF019B08+ CTGGAGAGCTTGATGTTTCAAAGGATGCACTTGTTCAAGTAACTTCACGATTGAGGGCAA
rJMSF009A11+ CAAGTAACTTCACGATTGAGGGCAA
rJMFF003A21+ AAAGGATGCACTTGTTCAAGTAACTTCACGATTGAGGGCAA
                      ____________________________________________________________
consensus CTGGAGAGCTTGATGTTTCAAAGGATGCACTTGTTCAAGTAACTTCACGATTGAGGGCAA
 
. : . : . : . : . : . :
rJMSF019B08+ ATCTTTTTGAAAGGGAGGGTGCTGTATCTGCTTTTGTGCTTGTTTCTCCATATCTTCCAA
rJMSF009A11+ ATCTTTTTGAAAGGGAGGGTGCTGTATCTGCTTTTGTGCCTGTTCCTCCATATCTTCCAA
rJMSF047D24+ AAGGGAGGGTGCTGTATCTGCTTTTGTGCCTGTTCCTCCATATCTTCCAA
rJMCP015E04- TGAAAGGGAGGGTGCTGTATCTGCTTTTGTGCCTGTTCCTCCATATCTTCCAA
rJMFF003A21+ ATCTTTTTGAAAGGGAGGGTGCTGTATCTGCTTTTGTGCCTGTTCCTCCATATCTTCCAA
                      ____________________________________________________________
consensus ATCTTTTTGAAAGGGAGGGTGCTGTATCTGCTTTTGTGCCTGTTCCTCCATATCTTCCAA
 
. : . : . : . : . : . :
rJMSF019B08+ TGCCAATAGATGCTTCTGATAGCCTAACAAAGTATGAAAGCAGAGATACTAGAAGGCATG
rJMSF009A11+ TGCCAATAGATGCTTCTGATAGCCTAACAAAGTATGAAAGCAGAGATACTAGAAGGCATG
rJMSF047D24+ TGCCAATAGATGCTTCTGATAGCCTAACAAAGTATGAAAGCAGAGATACTAGAAGGCATG
rJMCP015E04- TGCCAATAGATGCTTCTGATAGCCTAACAAAGTATGAAAGCAGAGATACTAGAAGGCATG
rJMFF003A21+ TGCCAATAGATGCTTCTGATAGCCTAACAAAGTATGAAAGCAGAGATACTAGAAGGCATG
                      ____________________________________________________________
consensus TGCCAATAGATGCTTCTGATAGCCTAACAAAGTATGAAAGCAGAGATACTAGAAGGCATG
 
. : . : . : . : . : . :
rJMSF019B08+ GACGAGGACATTCTTATTCTTCTGGTTATGGTGGCCTTAATGATATACCTCCAACTGATG
rJMSF009A11+ GACGAGGACATTCTTATTCTTCTGGTTATGGTGGCCTTAATGATATACCTCCAACTGATG
rJMSF047D24+ GACGAGGACATTCTTATTCTTCTGGTTATGGTGGCCTTAATGATATACCTCCAACTGATG
rJMCP015E04- GACGAGGACATTCTTATTCTTCTGGTTATGGTGGCCTTAATGATATACCTCCAACTGATG
rJMFF003A21+ GACGAGGACATTCTTATTCTTCTGGTTATGGTGGCCTTAATGATATACCTCCAACTGATG
                      ____________________________________________________________
consensus GACGAGGACATTCTTATTCTTCTGGTTATGGTGGCCTTAATGATATACCTCCAACTGATG
 
. : . : . : . : . : . :
rJMSF019B08+ GTTATGGAGGCTATGGTGGTCTTCAGAGTAGCAGCAGCAGCCTTGGATATGGAGCATATG
rJMSF009A11+ GTTATGGAGGCTATGGTGGTCTTCAGAGTAGCAGCAGCAGCCTTGGATATGGAGCATATG
rJMSF047D24+ GTTATGGAGGCTATGGTGGTCTTCAGAGTAGCAGCAGCAGCCTTGGATATGGAGCATATG
rJMCP015E04- GTTATGGAGGCTATGGTGGTCTTCAGAGTAGCAGCAGCAGCCTTGGATATGGAGCATATG
rJMFF003A21+ GTTATGGAGGCTATGGTGGTCTTCAGAGTAGCAGCAGCAGCCTTGGATATGGAGCATATG
                      ____________________________________________________________
consensus GTTATGGAGGCTATGGTGGTCTTCAGAGTAGCAGCAGCAGCCTTGGATATGGAGCATATG
 
. : . : . : . : . : . :
rJMSF019B08+ AAGGCTATTCTATTGGCCGTTCTGGATTGTCTGGGTCAAATCCTGCATCACGGAGAAAAA
rJMSF009A11+ AAGGCTATTCTATTGGCCGTTCTGGATTGTCTGGGTCAAATCCTGCATCACGGAGAAAAA
rJMSF047D24+ AAGGCTATTCTATTGGCCGTTCTGGATTGTCTGGGTCAAATCCTGCATCACGGAGAAAAA
rJMCP015E04- AAGGCTATTCTATTGGCCGTTCTGGATTGTCTGGGTCAAATCCTGCATCACGGAGAAAAA
rJMFF003A21+ AAGGCTATTCTATTGGCCGTTCTGGATTGTCTGGGTCAAATCCTGCATCACGGAGAAAAA
                      ____________________________________________________________
consensus AAGGCTATTCTATTGGCCGTTCTGGATTGTCTGGGTCAAATCCTGCATCACGGAGAAAAA
 
. : . : . : . : . : . :
rJMSF019B08+ GTTATGGTTACTAAAGTTTTCTGACTGGAACTGCAGCTGAGATACCTGAAGCTTGAAGCC
rJMSF009A11+ GTTATGGTTACTAAAGTTTTCTGACTGGAACTGCAGCTGAGATACCTGAAGCTTGAAGCC
rJMSF047D24+ GTTATGGTTACTAAAGTTTTCTGACTGGAACTGCAGCTGAGATACCTGAAGCTTGAAGCC
rJMCP015E04- GTTATGGTTACTAAAGTTTTCTGACTGGAACTGCAGCTGAGATACCTGAAGCTTGAAGCC
rJMFF003A21+ GTTATGGTTACTAAAGTTTTCTGACTGGAACTGCAGCTGAGATACCTGAAGCTTGAAGCC
                      ____________________________________________________________
consensus GTTATGGTTACTAAAGTTTTCTGACTGGAACTGCAGCTGAGATACCTGAAGCTTGAAGCC
 
. : . : . : . : . : . :
rJMSF019B08+ AGCCTACTGCCTTGTCCGATGAAGCCTCCTATCTAAACCAGAAGACCAGATGAATGAGGG
rJMSF009A11+ AGCCTACTGCCTTGTCCGATGAAGCCTCCTATCTAAACCAGAAGACCAGATGAATGAGGG
rJMSF047D24+ AGCCTACTGCCTTGTCCGATGAAGCCTCCTATCTAAACCAGAAGACCAGATGAATGAGGG
rJMCP015E04- AGCCTACTGCCTTGTCCGATGAAGCCTCCTATCTAAACCAGAAGACCAGATGAATGAGGG
rJMFF003A21+ AGCCTACTGCCTTGTCCGATGAAGCCTCCTATCTAAACCAGAAGACCAGATGAATGAGGG
                      ____________________________________________________________
consensus AGCCTACTGCCTTGTCCGATGAAGCCTCCTATCTAAACCAGAAGACCAGATGAATGAGGG
 
. : . : . : . : . : . :
rJMSF019B08+ GAAAACTCATGGCCCCACCTTGATGCTTTTGTTTAGGAGGACCAATATCTGAAGATCTTA
rJMSF009A11+ GAAAACTCATGGCCCCACCTTGATGCTTTTGTTTAGGAGGACCAATATCTGAAGATCTTA
rJMSF047D24+ GAAAACTCATGGCCCCACCTTGATGCTTTTGTTTAGGAGGACCAATATCTGAAGATCTTA
rJMCP015E04- GAAAACTCATGGCCCCACCTTGATGCTTTTGTTatccAcGACCAATATCTGAAGATCTTA
rJMFF003A21+ GAAAACTCATGGCCCCACCTTGATGCTTTTGTTTAGGAGGACCAATATCTGAAGATCTTA
                      ____________________________________________________________
consensus GAAAACTCATGGCCCCACCTTGATGCTTTTGTTTAGGAGGACCAATATCTGAAGATCTTA
 
. : . : . : . : . : . :
rJMSF019B08+ CCTTCTATTAAATGCCATGTCCTGACACTATATGTCCAAGCTTTAGATTCTTGTGCTCCC
rJMSF009A11+ CCTTCTATTAAATGCCATGTCCTGACACTATATGTCCAAGCTTTAGATTCTTGTGCTCCC
rJMSF047D24+ CCTTCTATTAAATGCCATGTCCTGACACTATATGTCCAAGCTTTAGATTCTTGTGCTCCC
rJMCP015E04- CCTTCTATTAAtacggtaGTCCTGACACTATATGaggttcgTTTtctaagaaGTGCTCCC
rJMFF003A21+ CCTTCTATTAAATGCCATGTCCTGACACTATATGTCCAAGCTTTAGATTCTTGTGCTCCC
                      ____________________________________________________________
consensus CCTTCTATTAAATGCCATGTCCTGACACTATATGTCCAAGCTTTAGATTCTTGTGCTCCC
 
. : . : . : . : . : . :
rJMSF019B08+ ATGAACCTGTGTACCTAGCAAGCCTATGTCCATTCTTACCTTATTTGGTGATTGTATTAG
rJMSF009A11+ ATGAACCTGTGTACCTAGCAAGCCTATGTCCATTCTTACCTTATTTGGTGATTGTATTAG
rJMSF047D24+ ATGAACCTGTGTACCTAGCAAGCCTATGTCCATTCTTACCTTATTTGGTGATTGTATTAG
rJMCP015E04- ATGtACCTGTGTACCTA
rJMFF003A21+ ATGAACCTGTGTACCTAGCAAGCCTATGTCCATTCTTACCTTATTTGGTGATTGTATTAG
                      ____________________________________________________________
consensus ATGAACCTGTGTACCTAGCAAGCCTATGTCCATTCTTACCTTATTTGGTGATTGTATTAG
 
. : . : . : . : . : . :
rJMSF019B08+ ACACGTTCATCATCGAGTTCTTAGCTACTTTCCTTATGTTTCATGATCAGTCTGTTTGTA
rJMSF009A11+ ACACGTTCATCATCGAGTTCTTAGCTACTTTCCTTATGTTTCATGATCAGTCTGTTTGTA
rJMSF047D24+ ACACGTTCATCATCGAGTTCTTAGCTACTTTCCTTATGTTTCATGATCAGTCTGTTTGTA
rJMFF003A21+ ACACGTTCATCATCGAGTTCTTAGCTACTTTCCTTATGTTTCATGATCAGTCTGTTTGTA
                      ____________________________________________________________
consensus ACACGTTCATCATCGAGTTCTTAGCTACTTTCCTTATGTTTCATGATCAGTCTGTTTGTA
 
. : . : . : . : . : . :
rJMSF019B08+ AGGATTTACCATTAGTTGGATGTGGTGTTGAC
rJMSF009A11+ AGGATTTACCATTAGTTGGATGTGGTGTTGACTAATTCTATTT
rJMSF047D24+ AGGATTTACCATTAGTTGGATGTGGTGTTGACTAATTCTATTT
rJMFF003A21+ AGGATTTACCATTAGTTGGATGTGGTGTTGACTAATTCTATTTTAAACAAAATTAATGAC
                      ____________________________________________________________
consensus AGGATTTACCATTAGTTGGATGTGGTGTTGACTAATTCTATTTTAAACAAAATTAATGAC