Contig 001014:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010B20Sequence574001014 (6)gb|KJB28786.1|9e-73hypothetical protein B456_005G069400 [Gossypium raimondii]708002536 (8)emb|CDO98724.1|4e-102unnamed protein product [Coffea canephora]
JMSF002D08Sequence286001014 (6)ref|NP_566571.1|4e-11dihydrolipoyl dehydrogenase 2 [Arabidopsis thaliana] gb|AAM64759.1| lipoamide de748002536 (8)ref|XP_011071352.1|4e-124PREDICTED: dihydrolipoyl dehydrogenase 1, mitochondrial [Sesamum indicum]
JMSF013A12Sequence467001014 (6)gb|KJB28786.1|7e-54hypothetical protein B456_005G069400 [Gossypium raimondii]746002536 (8)ref|XP_011071352.1|3e-126PREDICTED: dihydrolipoyl dehydrogenase 1, mitochondrial [Sesamum indicum]
JMSF035D24Sequence683001014 (6)gb|ACJ11739.1|8e-96dihydrolipoamide dehydrogenase [Gossypium hirsutum]592002536 (8)ref|XP_011071352.1|2e-100PREDICTED: dihydrolipoyl dehydrogenase 1, mitochondrial [Sesamum indicum]
JMSF041I07Sequence718001014 (6)gb|ACJ11739.1|1e-121dihydrolipoamide dehydrogenase [Gossypium hirsutum]640002536 (8)emb|CDO98724.1|1e-102unnamed protein product [Coffea canephora]
JMSF053G07Sequence650001014 (6)gb|ACJ11739.1|2e-88dihydrolipoamide dehydrogenase [Gossypium hirsutum]913002536 (8)ref|XP_011071352.1|2e-138PREDICTED: dihydrolipoyl dehydrogenase 1, mitochondrial [Sesamum indicum]

Alignment

This contig is upended


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JMSF041I07+                                                     CAAGTCGGCCCCAGACAG
                      ____________________________________________________________
consensus                                                       CAAGTCGGCCCCAGACAG
 
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JMSF041I07+           AGCCCATTTCAAGTCCAATATACCCAGCTCCAACAACCACTAGCTTCTTAGGAATTTCCT
                      ____________________________________________________________
consensus             AGCCCATTTCAAGTCCAATATACCCAGCTCCAACAACCACTAGCTTCTTAGGAATTTCCT
 
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JMSF041I07+           TTAATGCTAAAGCGCCAGTAGATGATACAATTTTTTCCTCATCAATGGTTATCCCAGGAA
JMSF035D24+                                                CTCATCAATGGTTATCCCAGGAA
                      ____________________________________________________________
consensus             TTAATGCTAAAGCGCCAGTAGATGATACAATTTTTTCCTCATCAATGGTTATCCCAGGAA
 
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JMSF041I07+           GACCTTTGACGTCAGAACCAGTGGCAATTATAATATTTTTCCCTTTGACAACAGTTTCAC
JMSF035D24+           GACCTTTGACGTCAGAACCAGTGGCAATTATAATATTTTTCCCTTTGACAACAGTTTCAC
JMSF053G07+                     GTCAGAACCAGTGGCAATTATAATATTTTTCCCTTTGACAACAGTTTCAC
                      ____________________________________________________________
consensus             GACCTTTGACGTCAGAACCAGTGGCAATTATAATATTTTTCCCTTTGACAACAGTTTCAC
 
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JMSF041I07+           CTCCATCAATAGTGTCCACCGTAATTTCAGAAGGTGAGAGGAACTTACCATATCCTTTGA
JMSF035D24+           CTCCATCAATAGTGTCCACCGTAATTTCAGAAGGTGAGAGGAACTTACCATATCCTTTGA
JMFF010B20+                                    TTCAGAAGGTGAGAGGAACTTACCATATCCTTTGA
JMSF053G07+           CTCCATCAATAGTGTCCACCGTAATTTCAGAAGGTGAGAGGAACTTACCATATCCTTTGA
                      ____________________________________________________________
consensus             CTCCATCAATAGTGTCCACCGTAATTTCAGAAGGTGAGAGGAACTTACCATATCCTTTGA
 
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JMSF041I07+           CATAGGTCACCTTGTTCTTTTTCAATAGACCCTCAATACCTTTTGTTAAGTTAGACACAG
JMSF035D24+           CATAGGTCACCTTGTTCTTTTTCAATAGACCCTCAATACCTTTTGTTAAGTTAGACACAG
JMFF010B20+           CATAGGTCACCTTGTTCTTTTTCAATAGACCCTCAATACCTTTTGTTAAGTTAGACACAG
JMSF013A12+                                                          AAGTTAGACACAG
JMSF053G07+           CATAGGTCACCTTGTTCTTTTTCAATAGACCCTCAATACCTTTTGTTAAGTTAGACACAG
                      ____________________________________________________________
consensus             CATAGGTCACCTTGTTCTTTTTCAATAGACCCTCAATACCTTTTGTTAAGTTAGACACAG
 
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JMSF041I07+           CTTTATCTTTTTGGGCCATCATAGCAGGTAAATCAACCTCAACAGAAGAAAACTTCACAC
JMSF035D24+           CTTTATCTTTTTGGGCCATCATAGCAGGTAAATCAACCTCAACAGAAGAAAACTTCACAC
JMFF010B20+           CTTTATCTTTTTGGGCCATCATAGCAGGTAAATCAACCTCAACAGAAGAAAACTTCACAC
JMSF013A12+           CTTTATCTTTTTGGGCCATCATAGCAGGTAAATCAACCTCAACAGAAGAAAACTTCACAC
JMSF053G07+           CTTTATCTTTTTGGGCCATCATAGCAGGTAAATCAACCTCAACAGAAGAAAACTTCACAC
                      ____________________________________________________________
consensus             CTTTATCTTTTTGGGCCATCATAGCAGGTAAATCAACCTCAACAGAAGAAAACTTCACAC
 
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JMSF041I07+           CATGGTGGGCAAATGAGTGTGTAGCTTCATGGTACATGTGTGAAGAGTGCAGTAATGCCT
JMSF035D24+           CATGGTGGGCAAATGAGTGTGTAGCTTCATGGTACATGTGTGAAGAGTGCAGTAATGCCT
JMFF010B20+           CATGGTGGGCAAATGAGTGTGTAGCTTCATGGTACATGTGTGAAGAGTGCAGTAATGCCT
JMSF013A12+           CATGGTGGGCAAATGAGTGTGTAGCTTCATGGTACATGTGTGAAGAGTGCAGTAATGCCT
JMSF053G07+           CATGGTGGGCAAATGAGTGTGTAGCTTCATGGTACATGTGTGAAGAGTGCAGTAATGCCT
                      ____________________________________________________________
consensus             CATGGTGGGCAAATGAGTGTGTAGCTTCATGGTACATGTGTGAAGAGTGCAGTAATGCCT
 
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JMSF041I07+           TAGAAGGAATACAACCGACGTTAAGGCAGGTGCTGCCGAGGGTTCCGCGCTTCTCGATAC
JMSF035D24+           TAGAAGGAATACAACCGACGTTAAGGCAGGTGCCGCCGAGGGTTCCGCGCTTCTCGATAC
JMFF010B20+           TAGAAGGAATACAACCGACGTTAAGGCAGGTGCCGCCGAGGGTTCCGCGCTTCTCGATAC
JMSF013A12+           TAGAAGGAATACAACCGACGTTAAGGCAGGTGCCGCCGAGGGTTCCGCGCTTCTCGATAC
JMSF002D08+                                                          CGCTTCTCGATAC
JMSF053G07+           TAGAAGGAATACAACCGACGTTAAGGCAGGTGCCGCCGAGGGTTCCGCGCTTCTCGATAC
                      ____________________________________________________________
consensus             TAGAAGGAATACAACCGACGTTAAGGCAGGTGCCGCCGAGGGTTCCGCGCTTCTCGATAC
 
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JMSF041I07+           AGGTGGTCTTGAGGCCGAGCTGAGCCGCCTTGATGGCGGCCACATAGCCGCCGGGGCCAC
JMSF035D24+           AGGTGGTCTTGAGGCCGAGCTGAGCCGCCTTGATGGCGGCCACATAGCCGCCGGGGCCAC
JMFF010B20+           AGGTGGTCTTGAGGCCGAGCTGAGCCGCCTTGATGGCGGCCACATAGCCGCCGGGGCCAC
JMSF013A12+           AGGTGGTCTTGAGGCCGAGCTGAGCCGCCTTGATGGCGGCCACATAGCCGCCGGGGCCAC
JMSF002D08+           AGGTGGTCTTGAGGCCGAGCTGAGCCGCCTTGATGGCGGCCACATAGCCGCCGGGGCCAC
JMSF053G07+           AGGTGGTCTTGAGGCCGAGCTGAGCCGCCTTGATGGCGGCCACATAGCCGCCGGGGCCAC
                      ____________________________________________________________
consensus             AGGTGGTCTTGAGGCCGAGCTGAGCCGCCTTGATGGCGGCCACATAGCCGCCGGGGCCAC
 
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JMSF041I07+           CGCCGATGACAACGACGTCGTTCTCCTCAGATCCCGACGCGAATCCTCTGCTCAAGGAGA
JMSF035D24+           CGCCGATGACAACGACGTCGTTCTCCTCAGATCCCGACGCGAATCCTCTGCTCAAGGAGA
JMFF010B20+           CGCCGATGACAACGACGTCGTTCTCCTCAGATCCCGACGCGAATCCTCTGCTCAAGGAGA
JMSF013A12+           CGCCGATGACAACGACGTCGTTCTCCTCAGATCCCGACGCGAATCCTCTGCTCAAGGAGA
JMSF002D08+           CGCCGATGACAACGACGTCGTTCTCCTCAGATCCCGACGCGAATCCTCTGCTCAAGGAGA
JMSF053G07+           CGCCGATGACAACGACGTCGTTCTCCTCAGATCCCGACGCGAATCCTCTGCTCAAGGAGA
                      ____________________________________________________________
consensus             CGCCGATGACAACGACGTCGTTCTCCTCAGATCCCGACGCGAATCCTCTGCTCAAGGAGA
 
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JMSF041I07+           AAGCGTAGTACTTGGAGCTGTTGTAGTAGAGATTCCTCGACGAGAGAAGAGACGACACCT
JMSF035D24+           AAGCGTAGTACTTGGAGCTGTTGTAGTAGAGATTCCTCGACGAGAGAAGAGACGACACCT
JMFF010B20+           AAGCGTAGTACTTGGAGCTGTTGTAGTAGAGATTCCTCGACGAGAGAAGAGACGACACCT
JMSF013A12+           AAGCGTAGTACTTGGAGCTGTTGTAGTAGAGATTCCTCGACGAGAGAAGAGACGACACCT
JMSF002D08+           AAGCGTAGTACTTGGAGCTGTTGTAGTAGAGATTCCTCGACGAGAGAAGAGACGACACCT
JMSF053G07+           AAGCGTAGTACTTGGAGCTGTTGTAGTAGAGATTCCTCGACGAGAGAAGAGACGACACCT
                      ____________________________________________________________
consensus             AAGCGTAGTACTTGGAGCTGTTGTAGTAGAGATTCCTCGACGAGAGAAGAGACGACACCT
 
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JMSF041I07+           TCCGTCTAGCAATACTCGCCATCGCCATTTCTCCTTTAC                     
JMSF035D24+           TCCGTCTAGCAATACTCGCCATCGCCATTTCTCCTTTACAATTCACAAATCTCTGGAACA
JMFF010B20+           TCCGTCTAGCAATACTCGCCATCGCCATTTCTCCTTTACAATTCACAAATCTCTGGAACA
JMSF013A12+           TCCGTCTAGCAATACTCGCCATCGCCATTTCTCCTTTACAATTCACAAATCTCTGGAACA
JMSF002D08+           TCCGTCTAGCAATACTCGCCATCGCCATTTCTCCTTTACAATTCACAAATCTCTGGAACA
JMSF053G07+           TCCGTCTAGCAATACTCGCCATCGCCATTTCTCCTTTACAATTCACAAATCTCTGGAACA
                      ____________________________________________________________
consensus             TCCGTCTAGCAATACTCGCCATCGCCATTTCTCCTTTACAATTCACAAATCTCTGGAACA
 
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JMSF035D24+           CTAACTTTGATTAGGTTTTTCTGAGCTTTTCTGGTCCTCTCTCTCCCTTTCTCTC     
JMFF010B20+           CTAACTTTGATTAGGTTTTTCTGAGCTTTTCTGGTCCTCTCTCTCCCTTTCTCTC     
JMSF013A12+           CTAACTTTGATTAGGTTTTTCTGAGCTTTTCT                            
JMSF002D08+           CTAACTTTGATTAGGTTTTTCTGAGCTT                                
JMSF053G07+           CTAACTTTGATTAGGTTTTTCTGAGCTTTTCTGGTCCTCTCTCTCCCTTTCTCTCTAATC
                      ____________________________________________________________
consensus             CTAACTTTGATTAGGTTTTTCTGAGCTTTTCTGGTCCTCTCTCTCCCTTTCTCTCTAATC