Contig 001008:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052D16-                            TGTTCATTGGTAGTGGTAAAAATTCACACAAGATTCATGTTT
                      ____________________________________________________________
consensus                               TGTTCATTGGTAGTGGTAAAAATTCACACAAGATTCATGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052D16-          CTGATGAACCCTGGAATCACAAAATCATTTGAATATCCTAATATGATTGGAGAATGGAAT
                      ____________________________________________________________
consensus             CTGATGAACCCTGGAATCACAAAATCATTTGAATATCCTAATATGATTGGAGAATGGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052D16-          GAACAATTCTAATATATTGTAAAGACATTTTTTTTAAAAAAAGACAGAAAATTCTACTGG
                      ____________________________________________________________
consensus             GAACAATTCTAATATATTGTAAAGACATTTTTTTTAAAAAAAGACAGAAAATTCTACTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052D16-          CAAGGTATAATGGTTGGCTCCATGGCAGTGGAAATATCTCTGTCACACATTTCAGGGCTG
                      ____________________________________________________________
consensus             CAAGGTATAATGGTTGGCTCCATGGCAGTGGAAATATCTCTGTCACACATTTCAGGGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052D16-          ATGCTTATAACCCCTTCTCCCTTTGCAATGTTTCTGAGGAAGGTGGTTTGATAATTCCCA
                      ____________________________________________________________
consensus             ATGCTTATAACCCCTTCTCCCTTTGCAATGTTTCTGAGGAAGGTGGTTTGATAATTCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052D16-          GAGGGAAATAAAGCTTCAATCATGTCTGCTAAGACCAACTGGGGCTGAGAAACAGCTCCA
                      ____________________________________________________________
consensus             GAGGGAAATAAAGCTTCAATCATGTCTGCTAAGACCAACTGGGGCTGAGAAACAGCTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052D16-          TCATACCAATCCAGGACTGTGTAGTTTTGTACCCTTTTATCATATCTCCACAAGCTTTGA
                      ____________________________________________________________
consensus             TCATACCAATCCAGGACTGTGTAGTTTTGTACCCTTTTATCATATCTCCACAAGCTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052D16-          TTCGAAATGAAAGCGAGACAAGATTGATCTTCGACATCGATGTTCCCAAGAAATGTGGAG
                      ____________________________________________________________
consensus             TTCGAAATGAAAGCGAGACAAGATTGATCTTCGACATCGATGTTCCCAAGAAATGTGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052D16-          ACATTGTATGCCATTGGATCATAGGTGTATGTTTCATCAATCACTACATCCACAGTACAT
                      ____________________________________________________________
consensus             ACATTGTATGCCATTGGATCATAGGTGTATGTTTCATCAATCACTACATCCACAGTACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052D16-          AAGATGGCATGGAAATCTTCAATGTCATCAGGTATAGACATGTTGTATGTGATTTTATTA
                      ____________________________________________________________
consensus             AAGATGGCATGGAAATCTTCAATGTCATCAGGTATAGACATGTTGTATGTGATTTTATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052D16-          ATGGAGTCGTCCACATTCACTCCACCTGCATCCTCCACAAACTTTAGCTTGTAATCCTCT
                      ____________________________________________________________
consensus             ATGGAGTCGTCCACATTCACTCCACCTGCATCCTCCACAAACTTTAGCTTGTAATCCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052D16-          TTTGTGAAAGACCATACCCCCTCATTGTTGTACTCCATCCAAGCTACTGTTGGTTTAAAT
                      ____________________________________________________________
consensus             TTTGTGAAAGACCATACCCCCTCATTGTTGTACTCCATCCAAGCTACTGTTGGTTTAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052D16-          GAAGCAGACTTGCCGGTTGCTGCTTTACTCAAGCACAAATAATTGCTCTTTATTGCATTA
                      ____________________________________________________________
consensus             GAAGCAGACTTGCCGGTTGCTGCTTTACTCAAGCACAAATAATTGCTCTTTATTGCATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052D16-          TATACTTGGTTAGCTCTGTATTCTTGGTTTGAGTAAACTCCCACATACTTGATCCACTCT
JMSF052D16+                                               ACTCCCACATACTTGATCCACTCT
                      ____________________________________________________________
consensus             TATACTTGGTTAGCTCTGTATTCTTGGTTTGAGTAAACTCCCACATACTTGATCCACTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052D16-          GCACGCTGGAGAGGCGCCCCCTCGCCC                                 
JMFS048D09+                                     CGAGGGGACGAACGTCGCAACGTANCAGGGTTGT
JMSF052D16+           GCACGCTGGAGAGGCGCCCCCTCGCCCGAGGGGACGAACGTCGCAACGTTACAGGGTTGT
                      ____________________________________________________________
consensus             GCACGCTGGAGAGGCGCCCCCTCGCCCGAGGGGACGAACGTCGCAACGTTACAGGGTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS048D09+           GCATCATCAGTGTTGGCAGTGAAGTGGACTACATATTGTTTGAGCTGTTGAGAATCACTT
JMFS048D10+                                         ACATATTGTTTGAGCTGTTGAGAATCACTT
JMSF052D16+           GCATCATCAGTGTTGGCAGTGAAGTGGACTACATATTGTTTGAGCTGTTGAGAATCACTT
                      ____________________________________________________________
consensus             GCATCATCAGTGTTGGCAGTGAAGTGGACTACATATTGTTTGAGCTGTTGAGAATCACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS048D09+           TTGTTAATGGTCTCTACTTGCCCATCATGGTATAGTTTTAGTGCACATTGTGAGGCCACC
JMFS048D10+           TTGTTAATGGTCTCTACTTGCCCATCATGGTATAGTTTTAGTGCACATTGTGAGGCCACC
JMSF052D16+           TTGTTAATGGTCTCTACTTGCCCATCATGGTATAGTTTTAGTGCACATTGTGAGGCCACC
                      ____________________________________________________________
consensus             TTGTTAATGGTCTCTACTTGCCCATCATGGTATAGTTTTAGTGCACATTGTGAGGCCACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS048D09+           ATATCTGATGTCATGCCTTTCAAGTTTCCCAATATCCCTAGCAGCTCGAAGAAAGAAACT
JMFS048D10+           ATATTTGATGTCATGCCTTTCAAGTTTCCCAATATCCCTAGCAGCTCTAAGAAAGAAACT
JMSF052D16+           ATATCTGATGTCATGCCTTTCAAGTTTCCCAATATCCCTAGCAGCTCGAAGAAAGAAACT
                      ____________________________________________________________
consensus             ATATCTGATGTCATGCCTTTCAAGTTTCCCAATATCCCTAGCAGCTCGAAGAAAGAAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS048D09+           GGAAAATAGTAGTCAGACTGTATTGAGTAGTTTGCTAATGGGATGACGAATGATTTTATT
JMFS048D10+           GGAAAATAGTAGTCAGACTGTATTGAGTAGTTTGCTAATGGGATGACGAATGATTTTATT
JMSF052D16+           GGAAAATAGTAGTCAGACTGTATTGAGTAGTTTGCTAATGGGATGACGAATGATTTTATT
                      ____________________________________________________________
consensus             GGAAAATAGTAGTCAGACTGTATTGAGTAGTTTGCTAATGGGATGACGAATGATTTTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS048D09+           CTAGACGTGCAATATTTAGTCCTGGTTGCCATCCTTGTATTGTTCTGAATGAGGAGATAA
JMFS048D10+           CTAGACGTGCAATATTTAGTCCTGGTTGCCATCCTTGTATTGTTCTGAATGAGGAGATAA
JMSF052D16+           CTAGACGTGCAATATTTAGTCCTGGTTGCCATCCTTGTATTGTTCTGAATGAGGAGATAA
                      ____________________________________________________________
consensus             CTAGACGTGCAATATTTAGTCCTGGTTGCCATCCTTGTATTGTTCTGAATGAGGAGATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS048D09+           CTTTTGCCATCAAGGCTGTTCTTGATGACCTTAAAGGACTGGCCATAGTATATCCTAAAG
JMFS048D10+           CTTTTGCCATCAAGGCTGTTCTTGATGACCTTAAAGGACTGGCCATAGTATATCCTAAAG
JMSF052D16+           CTTTTGCCATCAAGGCTGTTCTTGATGACCTTAAAGGACTGGCCATAGTATATCCTAAAG
                      ____________________________________________________________
consensus             CTTTTGCCATCAAGGCTGTTCTTGATGACCTTAAAGGACTGGCCATAGTATATCCTAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS048D09+           TATGAAGCGTCTGTCGCCTCCGAGATGTTGCCAACTTTCACGGTCGGCGTAGCCGCTTTT
JMFS048D10+           TATGAAGCGTCTGTCGCCTCCGAGATGTTGCCAACTTTCACGGTCGGCGTAGCCGCTTTT
JMSF052D16+           TATGAAGCGTCTGTCGCCTCCGAGATGTTGCCAACTTTCACGGTCGGCGTAGCCGCTTTT
                      ____________________________________________________________
consensus             TATGAAGCGTCTGTCGCCTCCGAGATGTTGCCAACTTTCACGGTCGGCGTAGCCGCTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS048D09+           GC-GCTTCCGACGTGCGGCGGCGCTCCAATAATGCCGCCGCAACAGAACAAAACCAAGAA
JMFS048D10+           GCTGCTTCTGACGTGCGGCGGCGCTCCAATAATGCCGCCGCAACAGAACAAAACCAAGAA
JMSF052D16+           GC-GCTTCCGACGTGCGGCGGCGCTCCAATAATGCCGCCGCAACAGAACAAAACCAAGAA
                      ____________________________________________________________
consensus             GC-GCTTCCGACGTGCGGCGGCGCTCCAATAATGCCGCCGCAACAGAACAAAACCAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS048D09+           AAGTAGTTGTGCCGCCCAGAAAGCAGGTGAATGTGATGATAGAGAAGACGACATGGATAG
JMFS048D10+           AAGTAGTTGTGCCGCCCAGAAAGCAGGTGAATGTGATGATAGAGAAGACGACATGGATAG
JMSF052D16+           AAGTAGTTGTGCCGCCCAGAAAGCAGGTGAATGTGATGATAGAGAAGACGACATGGATAG
                      ____________________________________________________________
consensus             AAGTAGTTGTGCCGCCCAGAAAGCAGGTGAATGTGATGATAGAGAAGACGACATGGATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS048D09+           ATTTATGGCCGGCCTGCAAGTAAATGAAAATGAATCAA                      
JMFS048D10+           ATTTATGGCCGGCCTGCAAGTAAATGAAAATGAATCAA                      
JMSF052D16+           ATTTATGGCCGGCCTGCAAGTAAATGAAAATGAATCAACACTAGCTAGCTTTAGCTTCAA
                      ____________________________________________________________
consensus             ATTTATGGCCGGCCTGCAAGTAAATGAAAATGAATCAACACTAGCTAGCTTTAGCTTCAA