Contig 001004:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020I18Sequence640001004 (3)ref|XP_009770676.1|2e-21PREDICTED: GTP-binding protein OBGC, chloroplastic [Nicotiana sylvestris]770005846 (3)ref|XP_009770676.1|2e-75PREDICTED: GTP-binding protein OBGC, chloroplastic [Nicotiana sylvestris]
JMSF021I18Sequence325001004 (3)ref|XP_009770676.1|3e-14PREDICTED: GTP-binding protein OBGC, chloroplastic [Nicotiana sylvestris]672005846 (3)ref|XP_009770676.1|4e-60PREDICTED: GTP-binding protein OBGC, chloroplastic [Nicotiana sylvestris]
JMSF051I13Sequence646001004 (3)ref|XP_009770676.1|1e-31PREDICTED: GTP-binding protein OBGC, chloroplastic [Nicotiana sylvestris]747005846 (3)ref|XP_009770676.1|3e-70PREDICTED: GTP-binding protein OBGC, chloroplastic [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF020I18+                            CAATGGCACAAACTTCTCTCTCCGAAACGCCACCACGCCGTTC
JMSF051I13+                        CTCCCAATGGCACAAACTTCTCTCTCCGAAACGCCATCACGCCGTTC
                      ____________________________________________________________
consensus                          CTCCCAATGGCACAAACTTCTCTCTCCGAAACGCCATCACGCCGTTC
 
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JMSF020I18+           CCTCCATCCCCAGCTTTCACATATATCTTCGCTCTATCGAAACACCTCATCACCGCCGGC
JMSF051I13+           CCTCCATCCCCAGCTTTCACATATATCTTCGCTCTATCGAAACACCTCATCACCGCCGGC
                      ____________________________________________________________
consensus             CCTCCATCCCCAGCTTTCACATATATCTTCGCTCTATCGAAACACCTCATCACCGCCGGC
 
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JMSF020I18+           ACGCCCTTCTCCTTTCTCCTTCACTTCCGCCCCTTCCCCTTCAAACACCCCATCCCCAAA
JMSF051I13+           ACGCCCTTCTCC-TTCTCCTTCACTTCCGCCCCTTCCCCTTCAAACACCCCATCCCCAAA
                      ____________________________________________________________
consensus             ACGCCCTTCTCCTTTCTCCTTCACTTCCGCCCCTTCCCCTTCAAACACCCCATCCCCAAA
 
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JMSF020I18+           ACCTATGACTACGTCGTCGTTGTCGTCATCATCCTCATCATCACTTCCATCAAACTCATT
JMSF051I13+           ACCTATGACTACGTCGTCGTTGTCGTCATCATCCTCATCATCACTTCCATCAAACTCATT
                      ____________________________________________________________
consensus             ACCTATGACTACGTCGTCGTTGTCGTCATCATCCTCATCATCACTTCCATCAAACTCATT
 
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JMSF020I18+           CTCTGAATCAACTTCATACAACTCAAACTTACCATAATCAAACCCTGAATTCTCCTCACT
JMSF051I13+           CTCTGAATCAACTTCATACAACTCAAACTTACCATAATCAAACCCTGAATTCTCCTCACT
                      ____________________________________________________________
consensus             CTCTGAATCAACTTCATACAACTCAAACTTACCATAATCAAACCCTGAATTCTCCTCACT
 
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JMSF021I18+                                           CTGAACGGAATTNTTTCACTTCGAACGG
JMSF020I18+           TTCATCAATTTCCGAGAATTCGGCATCTTCCTCTGAACGGAATTCTTTCACTTCGAACGG
JMSF051I13+           TTCATCAATTTCCGAGAATTCGGCATCTTCCTCTGAACGGAATTCTTTCACTTCGAACGG
                      ____________________________________________________________
consensus             TTCATCAATTTCCGAGAATTCGGCATCTTCCTCTGAACGGAATTCTTTCACTTCGAACGG
 
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JMSF021I18+           AATGCTGGACTCGTAGAGCCTGATTTCCTCCGAATTACGGGGAGGCGAGACGCAGAAGTC
JMSF020I18+           AATGCTGGACTCGTAGAGCCTGATTTCCTCCGAATTACGGGGAGGCGAGACGCAGAAGTC
JMSF051I13+           AATGCTGGACTCGTAGAGCCTGATTTCCTCCGAATTACGGGGAGGCGAGACGCAGAAGTC
                      ____________________________________________________________
consensus             AATGCTGGACTCGTAGAGCCTGATTTCCTCCGAATTACGGGGAGGCGAGACGCAGAAGTC
 
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JMSF021I18+           TTCTTTCGGAGGTAGTCGAGTGTAAGTGGTAGCGGTGTCACCGGCGGAGGTAGAGAGCGG
JMSF020I18+           TTCTTTCGGAGGTAGTCGAGTGTAAGTGGTAGCGGTGTCACCGGCGGAGGTAGAGAGCGG
JMSF051I13+           TTCTTTCGGAGGTAGTCGAGTGTAAGTGGTAGCGGTGTCACCGGCGGAGGTAGAGAGCGG
                      ____________________________________________________________
consensus             TTCTTTCGGAGGTAGTCGAGTGTAAGTGGTAGCGGTGTCACCGGCGGAGGTAGAGAGCGG
 
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JMSF021I18+           CGTTGGCGGCCGGAATTCACCGGACTTGAGAGTGCGGTGGTTGGATTTTCTTCTTCTGGT
JMSF020I18+           CGTTGGCGGCCGGAATTCACCGGACTTGAGAGTGCGGTGGTTGGATTTTCTTCTTCTGGT
JMSF051I13+           CGTTGGCGGCCGGAATTCACCGGACTTGAGAGTGCGGTGGTTGGATTTTCTTCTTCTGGT
                      ____________________________________________________________
consensus             CGTTGGCGGCCGGAATTCACCGGACTTGAGAGTGCGGTGGTTGGATTTTCTTCTTCTGGT
 
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JMSF021I18+           GTTCGTTAACACTCGTTTAGGGTTGGGCGTTCGAGCCNGGCAGCGAAGAGAGAAGTAGGA
JMSF020I18+           GTTCGTTAACACTCGTTTAGGGTTGGGCGTTCGAGCCTGGCAGCGAAGAGAGAAGTAGGA
JMSF051I13+           GTTCGTTAACACTCGTTTAGGGTTGGGCGTTCGAGCCTGGCAGCGAAGAGAGAAGTAGGA
                      ____________________________________________________________
consensus             GTTCGTTAACACTCGTTTAGGGTTGGGCGTTCGAGCCTGGCAGCGAAGAGAGAAGTAGGA
 
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JMSF021I18+           TAGAGAAGTAGCGGAGAGAGAGGCAGCCGCCATGTTTAGCTCAGAGCATTCCCGCC    
JMSF020I18+           TAGAGAAGTAGCGGAGAGAGAGGCAGCCGCCATGTTTAGCTCAGAGCATTCCCGCC    
JMSF051I13+           TAGAGAAGTAGCGGAGAGAGAGGCAGCCGCCATGTTTAGCTCAGAGCATTCCCGCCGCTC
                      ____________________________________________________________
consensus             TAGAGAAGTAGCGGAGAGAGAGGCAGCCGCCATGTTTAGCTCAGAGCATTCCCGCCGCTC