clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFN019J10 | Sequence | 389 | 000996 (5) | ref|XP_006340879.1| | 1e-43 | PREDICTED: sufE-like protein, chloroplastic-like [Solanum tuberosum] | |||||
JMSF011K08 | Sequence | 336 | 000996 (5) | ref|XP_006340879.1| | 1e-39 | PREDICTED: sufE-like protein, chloroplastic-like [Solanum tuberosum] | 714 | 000996 (5) | ref|XP_006340879.1| | 1e-40 | PREDICTED: sufE-like protein, chloroplastic-like [Solanum tuberosum] |
JMSF050E21 | Sequence | 691 | 000996 (5) | ref|XP_006340879.1| | 2e-43 | PREDICTED: sufE-like protein, chloroplastic-like [Solanum tuberosum] | 699 | 000996 (5) | ref|XP_006340879.1| | 3e-43 | PREDICTED: sufE-like protein, chloroplastic-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF011K08- GTGGGTTTGCGC
____________________________________________________________
consensus GTGGGTTTGCGC
. : . : . : . : . : . :
rJMSF011K08- ATNTAGTGTGCATNTTGGACNTCTTGTCNNNAGNTAGCCNAATCTGAGCTTACAACTTGC
rJMSF050E21- TAGCCCAATCTGAGCTTACAACTTGC
JMSF050E21+ TAGCCCAATCTGAGCTTACAACTTGC
____________________________________________________________
consensus ATNTAGTGTGCATNTTGGACNTCTTGTCNNNAGNTAGCCCAATCTGAGCTTACAACTTGC
. : . : . : . : . : . :
rJMSF011K08- ACCAGGAACATTGCTTACTACATTTTATTCAAACAATTTTTGCCTACCAATTTAGGTCAC
rJMSF050E21- ACCAGGAACATTGCTTACTACATTTTATTCAAACAATTTTTGCCTACCAATTTAGGTCAC
JMSF050E21+ ACCAGGAACATTGCTTACTACATTTTATTCAAACAATTTTTGCCTACCAATTTAGGTCAC
____________________________________________________________
consensus ACCAGGAACATTGCTTACTACATTTTATTCAAACAATTTTTGCCTACCAATTTAGGTCAC
. : . : . : . : . : . :
rJMSF011K08- ATATATCCATTGAGGAAAAAAAACAAAAAAACCCACATGAAGCNNCATAGTAAACAACTT
rJMSF050E21- ATATATCCATTGAGGAAAAAAAACAAAAAAACCCACATGAAGCAGCATAGTAAACAACTT
JMSF050E21+ ATATATCCATTGAGGAAAAAAAACAAAAAAACCCACATGAAGCAGCATAGTAAACAACTT
____________________________________________________________
consensus ATATATCCATTGAGGAAAAAAAACAAAAAAACCCACATGAAGCAGCATAGTAAACAACTT
. : . : . : . : . : . :
rJMSF011K08- AGAATAGATATTCCTAATAAATTCTACAAAAAGATCAATACTGTAGAACTTCAAGTTATT
rJMSF050E21- AGAATAGATATTCCTAATAAATTCTACAAAAAGATCAATACTGTAGAACTTCAAGTTATT
JMSF050E21+ AGAATAGATATTCCTAATAAATTCTACAAAAAGATCAATACTGTAGAACTTCAAGTTATT
____________________________________________________________
consensus AGAATAGATATTCCTAATAAATTCTACAAAAAGATCAATACTGTAGAACTTCAAGTTATT
. : . : . : . : . : . :
rJMSF011K08- TTCTAATCCCTTCTTTTTAGGTTCTTATTAGCGTATTATTGGCGAAGGTTGTAACCTTTC
rJMSF050E21- TTCTAATCCCTTCTTTTTAGGTTCTTATTAGCGTATTATTGGCGAAGGTTGTAACCTTTC
JMSF050E21+ TTCTAATCCCTTCTTTTTAGGTTCTTATTAGCGTATTATTGGCGAAGGTTGTAACCTTTC
____________________________________________________________
consensus TTCTAATCCCTTCTTTTTAGGTTCTTATTAGCGTATTATTGGCGAAGGTTGTAACCTTTC
. : . : . : . : . : . :
rJMSF011K08- CCCACTATCCATCCAAAATCGAATAATACCCAACAATTTCNGTTAAGGCCAGCTTCTTTG
rJMSF050E21- CCCACTATCCATCCAAAATCGAATAATACCCAACAATTTCAGTTAAGGCCAGCTTCTTTG
JMFN019J10+ GAATAATACCCAACAATTTCAGTTAAGGCCAGCGTCTTTG
JMSF050E21+ CCCACTATCCATCCAAAATCGAATAATACCCAACAATTTCAGTTAAGGCCAGCTTCTTTG
____________________________________________________________
consensus CCCACTATCCATCCAAAATCGAATAATACCCAACAATTTCAGTTAAGGCCAGCTTCTTTG
. : . : . : . : . : . :
rJMSF011K08- GGGGTTTTAGCGACGATNGAGAGAGCGTGGAGTCCAGATTGGAGCTCATCAGAGAGCANA
rJMSF050E21- GGGGTTTTAGCGACGATAGAGAGAGCGTGGAGTCCAGATTGGAGCTCATCAGAGAGCAGA
JMFN019J10+ GGGGTTTTAGCGACGATAGAGAGAGCGTGGAGTCCAGATTGGAGCTCATCAGAGAGCAGA
JMSF011K08+ AGCGACGATAGAGAGAGCGTGGAGTCCAGATTGGAGCTCATCAGAGAGCAGA
JMSF050E21+ GGGGTTTTAGCGACGATAGAGAGAGCGTGGAGTCCAGATTGGAGCTCATCAGAGAGCAGA
____________________________________________________________
consensus GGGGTTTTAGCGACGATAGAGAGAGCGTGGAGTCCAGATTGGAGCTCATCAGAGAGCAGA
. : . : . : . : . : . :
rJMSF011K08- TCGTAGACCATACGGTGTCGTTTCACAAGGTTCTGGCCATCGAACTNGCCGGAGACGATC
rJMSF050E21- TCGTAGACCATACGGTGTCGTTTCACAAGGTTCTGGCCATCGAACTTGCCGGAGACGATC
JMFN019J10+ TCGTAGGCCATACGGTGTCGTTTCACAAGGTTCTGGCCATCGAACTTGCCGGAGACGATC
JMSF011K08+ TCGTAGACCATACGGTGTCGTTTCACAAGGTTCTGGCCATCGAACTTGCCGGAGACGATC
JMSF050E21+ TCGTAGACCATACGGTGTCGTTTCACAAGGTTCTGGCCATCGAACTTGCCGGAGACGATC
____________________________________________________________
consensus TCGTAGACCATACGGTGTCGTTTCACAAGGTTCTGGCCATCGAACTTGCCGGAGACGATC
. : . : . : . : . : . :
rJMSF011K08- TTCACGTTGAAGTGGGTCTCGCCATTAGAGCCGCTCTCCTTCACGGCCGCGTGGCCTGCA
rJMSF050E21- TTCACGTTGAAGTGGGTCTCGCCATTAGAGCCGCTCTCCTTCACGGCCGCGTGGCCTGCA
JMFN019J10+ TTCACGTTGAAGTGGGTCTCGCCATTAGAGCCGCTCTCCTTCACGGCCGCGTGGCCTGCA
JMSF011K08+ TTCACGTTGAAGTGGGTCTCGCCATTAGAGCCGCTCTCCTTCACGGCCGCGTGGCCTGCA
JMSF050E21+ TTCACGTTGAAGTGGGTCTCGCCATTAGAGCCGCTCTCCTTCACGGCCGCGTGGCCTGCA
____________________________________________________________
consensus TTCACGTTGAAGTGGGTCTCGCCATTAGAGCCGCTCTCCTTCACGGCCGCGTGGCCTGCA
. : . : . : . : . : . :
rJMSF011K08- TGCTGGTAGGAGACGTCTTCCACTTCAACTANGCTCGCTTCCAGCGTAGACAATAGCCTC
rJMSF050E21- TGCTGGTAGGAGACGTCTTCCACTTCAACTAGGCTCGCTTCCAGCGTAGACAATAGCCTC
JMFN019J10+ TGCTGGTAGGAGACGTCTTCCACTTCAACTAGGCTCGCTTCCAGCGTAGACAATAGCCTC
JMSF011K08+ TGCTGGTAGGAGACGTCTTCCACTTCAACTAGGCTCGCTTCCAGCGTAGACAATAGCCTC
JMSF050E21+ TGCTGGTAGGAGACGTCTTCCACTTCAACTAGGCTCGCTTCCAGCGTAGACAATAGCCTC
____________________________________________________________
consensus TGCTGGTAGGAGACGTCTTCCACTTCAACTAGGCTCGCTTCCAGCGTAGACAATAGCCTC
. : . : . : . : . : . :
rJMSF011K08- GTCTTGATTCGGCTCGCTCTTGATGCCACCGCTCTGGACGCCATTGCGAATTGTCTTCTA
rJMSF050E21- GTCTTGATTCGGCTCGCTCTTGATGCCACCGCTCTGGACGCCATTGCAAATTGTCTTCTA
JMFN019J10+ GTCTTGATTCGGCTCGCTCTTGATGCCACCGCTCTGGACGCCATTGCAAATTGTCTTCTA
JMSF011K08+ GTCTTGATTCGGCTCGCTCTTGATGCCACCGCTCTGGACGCCATTGCAAATTGTCTTCTA
JMSF050E21+ GTCTTGATTCGGCTCGCTCTTGATGCCACCGCTCTGGACGCCATTGCAAATTGTCTTCTA
____________________________________________________________
consensus GTCTTGATTCGGCTCGCTCTTGATGCCACCGCTCTGGACGCCATTGCAAATTGTCTTCTA
. : . : . : . : . : . :
rJMSF011K08- TGGGCTCGACTCTTCAGTTCTGCCCGCTTTGTGTTATCTGT
rJMSF050E21- TGGGCTCGACTCTTCAGTTCTGCCCGCTTTGTGTTATCTGTACAACAAAAGGNTTGATCT
JMFN019J10+ TGGGCTCGACTCTTCAGTTCTGCCCGCTTTGTG
JMSF011K08+ TGGGCTCGACTCTTCAGTTCTGCCCGCTTTGTGTTATCTGT
JMSF050E21+ TGGGCTCGACTCTTCAGTTCTGCCCGCTTTGTGTTATCTGTACAACAAAAGGTTTGATCT
____________________________________________________________
consensus TGGGCTCGACTCTTCAGTTCTGCCCGCTTTGTGTTATCTGTACAACAAAAGGTTTGATCT