| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010A05 | Sequence | 541 | 000995 (9) | gb|KGN61503.1| | 3e-55 | Methylenetetrahydrofolate reductase [Cucumis sativus] | 722 | 009634 (6) | gb|ABK92634.1| | 3e-89 | unknown [Populus trichocarpa] |
| JMFF021O18 | Sequence | 403 | 000995 (9) | gb|KJB37865.1| | 3e-64 | hypothetical protein B456_006G223600 [Gossypium raimondii] | 583 | 002580 (2) | ref|NP_001051683.1| | 1e-55 | Os03g0815200 [Oryza sativa Japonica Group] sp|Q75HE6.1|MTHR_ORYSJ RecName: Full= |
| JMFF028D20 | Sequence | 559 | 000995 (9) | ref|XP_009785052.1| | 1e-98 | PREDICTED: probable methylenetetrahydrofolate reductase [Nicotiana sylvestris] | 645 | 002580 (2) | ref|XP_008457198.1| | 4e-71 | PREDICTED: probable methylenetetrahydrofolate reductase [Cucumis melo] ref|XP_0 |
| JMFF036C04 | Sequence | 487 | 000995 (9) | gb|KGN61503.1| | 1e-69 | Methylenetetrahydrofolate reductase [Cucumis sativus] | 769 | 009634 (6) | gb|ABK92634.1| | 1e-99 | unknown [Populus trichocarpa] |
| JMFF042B02 | Sequence | 653 | 000995 (9) | gb|KGN61503.1| | 4e-103 | Methylenetetrahydrofolate reductase [Cucumis sativus] | |||||
| JMSF040N21 | Sequence | 644 | 000995 (9) | ref|XP_008457198.1| | 9e-107 | PREDICTED: probable methylenetetrahydrofolate reductase [Cucumis melo] ref|XP_0 | 858 | 009634 (6) | ref|XP_004250093.1| | 7e-109 | PREDICTED: methylenetetrahydrofolate reductase 2-like [Solanum lycopersicum] |
| JMSF048E15 | Sequence | 700 | 000995 (9) | gb|KGN61503.1| | 5e-105 | Methylenetetrahydrofolate reductase [Cucumis sativus] | 782 | 009634 (6) | gb|ABK92634.1| | 2e-104 | unknown [Populus trichocarpa] |
| JMSF050D05 | Sequence | 301 | 000995 (9) | gb|KGN61503.1| | 6e-06 | Methylenetetrahydrofolate reductase [Cucumis sativus] | 754 | 009634 (6) | gb|ABK92634.1| | 2e-94 | unknown [Populus trichocarpa] |
| JMSF050L23 | Sequence | 134 | 000995 (9) | ||||||||
This contig is upended
. : . : . : . : . : . :
JMFF028D20+ CAG
JMSF040N21+ CAG
____________________________________________________________
consensus CAG
. : . : . : . : . : . :
JMFF028D20+ CTGTAGCCACCCCACTAGCAGGTATAACATCAGGATGTGCCTCTGGATAACCGGCAACCG
JMSF040N21+ CTGTAGCCACTCCACTAGCAGGTATTACATCAGGATGTGCCTCTGGATAACCGGCAACCG
JMFF042B02+ ACATCAGGATGTGCCTCTGGATAACCGGCAACCG
JMSF048E15+ CCACTAGCAGGTATTACATCAGGATGTGCCTCTGGATAACCGGCAACCG
____________________________________________________________
consensus CTGTAGCCACTCCACTAGCAGGTATTACATCAGGATGTGCCTCTGGATAACCGGCAACCG
. : . : . : . : . : . :
JMFF028D20+ TGATCCCGAAGTAGTCCCCGTATTTTTCACGCATGTGCTTCACGAGGTCCAAGGCGCAGG
JMSF040N21+ TGATCCCGAAGTAGTCCCCGTACTTTTCACGCATGTGCTTCACGAGGTCCAAGGCGCAGG
JMFF042B02+ TGATCCCGAAGTAGTCNCCGTACTTNTCACGCATGTGCTTCACGAGGTCCAAGGCGCAGG
JMSF048E15+ TGATCCCGAAGTAGTCCCCGTACTTTTCACGCATGTGCTTCACGAGGTCCAAGGCGCAGG
____________________________________________________________
consensus TGATCCCGAAGTAGTCCCCGTACTTTTCACGCATGTGCTTCACGAGGTCCAAGGCGCAGG
. : . : . : . : . : . :
JMFF021O18+ GGCCGCGAGGAGGGTCACCGCGGAGGG
JMFF028D20+ AGAAGCCGCCTTCGACGGGGACGAACTTGTCCTGGCCGCGAGGAGGGTCACCGCGGAGGG
JMSF040N21+ AGAAGCCACCTTCGACCTGGACGAACTTGTCCTGGCCGTGAGGCGGGTCACCGCGGAGAG
JMFF010A05+ CCTGGACGAACTTGTCCTGGCCGTGAGGCGGGTCACCGCGGAGAG
JMFF036C04+ CGTGAGGCGGGTCACCGCGGAGAG
JMFF042B02+ AGAAGCCACCTTCGACCTGGACGAACTTGTCCTGGCCGTGAGGCGGGTCACCGCGGAGAG
JMSF048E15+ AGAAGCCACCTTCGACCTGGACGAACTTGTCCTGGCCGTGAGGCGGGTCACCGCGGAGAG
____________________________________________________________
consensus AGAAGCCACCTTCGACCTGGACGAACTTGTCCTGGCCGTGAGGCGGGTCACCGCGGAGAG
. : . : . : . : . : . :
JMFF021O18+ CGAGGACGTTTTGGACGCCGTTAGACTTGATGGTATCCAGAGCGTGGTCGATCTTCTCAA
JMFF028D20+ CGAGGACGTTTTGGACGCCGTTAGACTTGATGGTATCCAGAGCGTGGTCGATCTTCTCAA
JMSF040N21+ CGAGGACGTTTTGGATGCCGTTAGACTTGATGGTGTCCAGAGCGTGGTCGATCTTCTCAA
JMFF010A05+ CGAGGACGTTTTGGATGCCGTTAGACTTGATGGTGTCCAGAGCGTGGTCGATCTTCTCAA
JMFF036C04+ CGAGGACGTTTTGGATGCCGTTAGACTTGATGGTGTCCAGAGCGTGGTCGATCTTCTCAA
JMFF042B02+ CGAGGACGTTTTGGATGCCGTTAGACTTGATGGTGTCCAGAGCGTGGTCGATCTTCTCAA
JMSF048E15+ CGAGGACGTTTTGGATGCCGTTAGACTTGATGGTGTCCAGAGCGTGGTCGATCTTCTCAA
____________________________________________________________
consensus CGAGGACGTTTTGGATGCCGTTAGACTTGATGGTGTCCAGAGCGTGGTCGATCTTCTCAA
. : . : . : . : . : . :
JMFF021O18+ CGGGCATGTTGGTGCAGGTGAGATGCATCATGGTCTCAACGCACACCTTATTCTGCATGC
JMFF028D20+ CGGGCATGTTGGTGCAGGTGAGATGCATCATGGTCTCAACGCACACCTTATTCTGCATGC
JMSF040N21+ CAGGCATGTTGGTGCAGGTGAGATGCATCATGGTCTCAACGCAGACCATATTCTGCATGC
JMFF010A05+ CAGGCATGTTGGTGCAGGTGAGATGCATCATGGTCTCAACGCAGACCATATTCTGCATGC
JMFF036C04+ CAGGCATGTTGGTGCAGGTGAGATGCATCATGGTCTCAACGCAGACCATATTCTGCATGC
JMFF042B02+ CAGGCATGTTGGTGCAGGTGAGATGCATCATGGTCTCAACGCAGACCATATTCTGCATGC
JMSF048E15+ CAGGCATGTTGGTGCAGGTGAGATGCATCATGGTCTCAACGCAGACCATATTCTGCATGC
____________________________________________________________
consensus CAGGCATGTTGGTGCAGGTGAGATGCATCATGGTCTCAACGCAGACCATATTCTGCATGC
. : . : . : . : . : . :
JMFF021O18+ GGTTGGCGATGTCGAGGGTGAGATCGGCGGTGGAGCCGCCGGCG-CCCCACGTGATATCG
JMFF028D20+ GGTTGGCGATGTCGAGGGTGAGATCGGCGGTGGAGCCGCCGGCG-CCCCACGTGATATCG
JMSF040N21+ GGTTGGCGATGTCGAGGGTGAGATCGGCGGTGGAGCCGCCGGCG-CCCCAGGTGATATCG
JMFF010A05+ GGTTGGCGATGTCGAGGGTGAGATCGGCGGTGGAGCCGCCGGCGCCCCCAGGTGATATCG
JMFF036C04+ GGTTGGCGATGTCGAGGGTGAGATCGGCGGTGGAGCCGCCGGCG-CCCCAGGTGATATCG
JMFF042B02+ GGTTGGCGATGTCGAGGGTGAGATCGGCGGTGGAGCCGCCGGCG-CCCCAGGTGATATCG
JMSF048E15+ GGTTGGCGATGTCGAGGGTGAGATCGGCGGTGGAGCCGCCGGCG-CCCCAGGTGATATCG
____________________________________________________________
consensus GGTTGGCGATGTCGAGGGTGAGATCGGCGGTGGAGCCGCCGGCG-CCCCAGGTGATATCG
. : . : . : . : . : . :
JMFF021O18+ CAGAAGGTGGGGTTATGAGCCACCATGCGCTCCATCCGCTCGAAAAAGTTCTCAACTACT
JMFF028D20+ CAGAAGGTGGGGTTATGAGCCACCATGCGCTCCATCCGCTCGAAAAAGTTCTCAACTACT
JMSF040N21+ CAGAAGGTGGGGTTATGAGCCACCATTCGGTCCATTCGCTCGAACAAGTTCTCAACTCCG
JMFF010A05+ CAGAAGGTGGGGTTATGAGCCACCATTCGGTCCATTCGCTCGAACAAGTTCTCAACTCCG
JMFF036C04+ CAGAAGGTGGGGTTATGAGCCACCATTCGGTCCATTCGCTCGAACAAGTTCTCAACTCCG
JMFF042B02+ CAGAAGGTGGGGTTATGAGCCACCATTCGGTCCATTCGCTCGAACAAGTTCTCAACTCCG
JMSF048E15+ CAGAAGGTGGGGTTATGAGCCACCATTCGGTCCATTCGCTCGAACAAGTTCTCAACTCCG
JMSF050D05+ G
____________________________________________________________
consensus CAGAAGGTGGGGTTATGAGCCACCATTCGGTCCATTCGCTCGAACAAGTTCTCAACTCCG
. : . : . : . : . : . :
JMFF021O18+ TCCTGCTTCCTCGGAGGGAAGAACTCGAAGGAGAACACCACCTTATTGCCATTGTTCTCC
JMFF028D20+ TCCTGCTTCCTCGGAGGGAAGAACTCGAAGGAGAACACCACCTTATTGCCATTGTTCTCC
JMSF040N21+ TCCTCCGTCTTCGGAGGGAAGAACTCGAAGGAGAACACCACCTTATTGCCATCGTTCTCC
JMFF010A05+ TCCTCCGTCTTCGGAGGGAAGAACTCGAAGGAGAACACCACCTTATTGCCATCGTTCTCC
JMFF036C04+ TCCTCCGTCTTCGGAGGGAAGAACTCGAAGGAGAACACCACCTTATTGCCATCGTTCTCC
JMFF042B02+ TCCTCCGTCTTCGGAGGGAAGAACTCGAAGGAGAACACCACCTTATTGCCATCGTTCTCC
JMSF048E15+ TCCTCCGTCTTCGGAGGGAAGAACTCGAAGGAGAACACCACCTTATTGCCATCGTTCTCC
JMSF050D05+ TCCTCCGTNTTCGGAGGGAAGAACTCGAAGGAGAACACCACCTTATTGCCATCGTTCTCC
____________________________________________________________
consensus TCCTCCGTCTTCGGAGGGAAGAACTCGAAGGAGAACACCACCTTATTGCCATCGTTCTCC
. : . : . : . : . : . :
JMFF021O18+ TTGGACACCTCCCGGATCTTGTCTATCACCTTCATATCTGCTCTTTCTCT
JMFF028D20+ TTGGACACCTCCCGGATCTTGTCTATCACCTTCATATCTGCTCTTTCTCT
JMSF040N21+ TTGGACAACTCCCGGATCTTGTCTATCACCTTCATAACTGCTCTTCCTCTTTCACTCTCG
JMFF010A05+ TTGGACAACTCCCGGATCTTGTCTATCACCTTCATAACTGCTCTTCCTCTTTCACTCTCG
JMFF036C04+ TTGGACAACTCCCGGATCTTGTCTATCACCTTCATAACTGCTCTTCCTCTTTCACTCTCG
JMSF050L23+ TCACCTTCATAACTGCTCTTCCTCTTTCACTCTAG
JMFF042B02+ TTGGACAACTCCCGGATCTTGTCTATCACCTTCATAACTGCTCTTCCTCTTTCACTCTCG
JMSF048E15+ TTGGACAACTCCCGGATCTTGTCTATCACCTTCATAACTGCTCTTCCTCTTTCACTCTCG
JMSF050D05+ TTGGACAACTCCCGGATCTTGTCTATCACCTTCATAACTGCTCTTCCTCTTTCACTCTCG
____________________________________________________________
consensus TTGGACAACTCCCGGATCTTGTCTATCACCTTCATAACTGCTCTTCCTCTTTCACTCTCG
. : . : . : . : . : . :
JMSF040N21+ TAGATCTGCTCAACTCGCAATGCAGATTCCAAGCTCGCGTCTAGGGATTCGAAATGGAAT
JMFF010A05+ TAGCTCTGCTCAACTCGCAATGCAGATTCCAAGCTCGCGTCTAGGGATTCGAAATGGAAT
JMFF036C04+ TAGCTCTGCTCAACTCGCAATGCAGATTCCAAGCTCGCGTCTAGGGATTCGAAATGGAAT
JMSF050L23+ TAGCTCTGCTCAACTCGCAATGCAGATTCCAANCTCGNGTNTAGGGATTNGAAATGGAAT
JMFF042B02+ TAGCTCTGCTCAACTCGCAATGCAGATTCCAAGCTCGCGTCTAGGGATTCGAAATGGAAT
JMSF048E15+ TAGCTCTGCTCAACTCGCAATGCAGATTCCAAGCTCGCGTCTAGGGATTCGAAATGGAAT
JMSF050D05+ TAGCTCTGCTCAACTCGCAATGCAGATTCCAAGCTNGCGTCTAGGGATTCGAAATGGAAT
____________________________________________________________
consensus TAGCTCTGCTCAACTCGCAATGCAGATTCCAAGCTCGCGTCTAGGGATTCGAAATGGAAT
. : . : . : . : . : . :
JMSF040N21+ CTCGACTCCGAAATGAAGGGAAGAAGAGGAGAAAATGGAAT
JMFF010A05+ CTCGACTCCGAAATGAAGGGAAGAAGAGGAGAAAATGGAATGAGAGCTGTGAAATAGGTA
JMFF036C04+ CTCGACTCCGAAATGAAGGGAAGAAGAGGAGAAAATGGAATGAG
JMSF050L23+ CTCGACTCCGAAATGAAGGGAAGAAGAGGAGAAAATG
JMFF042B02+ CTCGACTCCGAAATGAAGGGAAGAAGAGGAGAAAATGGAATGAGAGCTGTGAAATAGGTA
JMSF048E15+ CTCGACTCCGAAATGAAGGGAAGAAGAGGAGAAAATGGAATGAGAGCTGTGAAATAGGTA
JMSF050D05+ CTCGACTCCNAAATGAAGGGAAGAAGAGGAGAAAATGGAATGAGAGCTGTGAAATAGGTA
____________________________________________________________
consensus CTCGACTCCGAAATGAAGGGAAGAAGAGGAGAAAATGGAATGAGAGCTGTGAAATAGGTA
. : . : . : . : . : . :
JMFF010A05+ CAGCCTTTCTTATA
JMFF042B02+ CAGCCTTTCTTATACT
JMSF048E15+ CAGCCTTTCTTATACTATTCCGAACTCACCAATCCACCAATCCTTTTGTC
JMSF050D05+ CAGCCTTTNTTATANTATTCCGAACTCACCAATCCACCAATCCTTTTGTCAATCCTGTTA
____________________________________________________________
consensus CAGCCTTTCTTATACTATTCCGAACTCACCAATCCACCAATCCTTTTGTCAATCCTGTTA