Contig 000983:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020F21Sequence570000983 (3)ref|XP_009607865.1|1e-50PREDICTED: calcium sensing receptor, chloroplastic [Nicotiana tomentosiformis]705013698 (3)ref|XP_011078735.1|8e-90PREDICTED: calcium sensing receptor, chloroplastic [Sesamum indicum] ref|XP_0110
JMFF032M10Sequence550000983 (3)gb|EYU38155.1|5e-46hypothetical protein MIMGU_mgv1a007840mg [Erythranthe guttata]667013698 (3)ref|XP_011078735.1|1e-82PREDICTED: calcium sensing receptor, chloroplastic [Sesamum indicum] ref|XP_0110
JMSF049C23Sequence551000983 (3)gb|EYU38155.1|5e-46hypothetical protein MIMGU_mgv1a007840mg [Erythranthe guttata]695013698 (3)ref|XP_011078735.1|1e-107PREDICTED: calcium sensing receptor, chloroplastic [Sesamum indicum] ref|XP_0110

Alignment

This contig is upended


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JMFF020F21+                                        GCCTTCAATCACCTTTGAGGTCTGCTGTGCT
JMFF032M10+                                                            TCTGCTGTGCT
JMSF049C23+                                                            TCTGCTGTGCT
                      ____________________________________________________________
consensus                                          GCCTTCAATCACCTTTGAGGTCTGCTGTGCT
 
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JMFF020F21+           GCATCAGCAACTGTCTTGGCAGCAGTTATCACGGGTTCAGTGTCAAAGCCAGAGCCTTGA
JMFF032M10+           GCATCAGCAACTGTCTTGGCAGCAGTTATCACGGGTTCAGTGTCAAAGCCAGAGCCTTGA
JMSF049C23+           GCATCAGCAACTGTCTTGGCAGCAGTTATCACGGGTTCAGTGTCAAAGCCAGAGCCTTGA
                      ____________________________________________________________
consensus             GCATCAGCAACTGTCTTGGCAGCAGTTATCACGGGTTCAGTGTCAAAGCCAGAGCCTTGA
 
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JMFF020F21+           ATTGCCTCTTGTGCTTTCTTGGAGGCATCAGAAACTACAGGAGAAGCAACCTTCACTGCC
JMFF032M10+           ATTGCCTCTTGTGCTTTCTTGGAGGCATCAGAAACTACAGGAGAAGCAACCTTCACTGCC
JMSF049C23+           ATTGCCTCTTGTGCTTTCTTGGAGGCATCAGAAACTACAGGAGAAGCAACCTTCACTGCC
                      ____________________________________________________________
consensus             ATTGCCTCTTGTGCTTTCTTGGAGGCATCAGAAACTACAGGAGAAGCAACCTTCACTGCC
 
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JMFF020F21+           TCATCTGTAGCCTGCTTTAAAATTGGCAATGCCACATCAACGCCAGGCTTCACAAACTCA
JMFF032M10+           TCATCTGTAGCCTGCTTTAAAATTGGCAATGCCACATCAACGCCAGGCTTCACAAACTCA
JMSF049C23+           TCATCTGTAGCCTGCTTTAAAATTGGCAATGCCACATCAACGCCAGGCTTCACAAACTCA
                      ____________________________________________________________
consensus             TCATCTGTAGCCTGCTTTAAAATTGGCAATGCCACATCAACGCCAGGCTTCACAAACTCA
 
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JMFF020F21+           ACAACTGGCCCTATCACCCTCTGAGCAGTATCAAAGACACTCAAACCCAATTGTTGAACT
JMFF032M10+           ACAACTGGCCCTATCACCCTCTGAGCAGTATCAAAGACACTCAAACCCAATTGTTGAACT
JMSF049C23+           ACAACTGGCCCTATCACCCTCTGAGCAGTATCAAAGACACTCAAACCCAATTGTTGAACT
                      ____________________________________________________________
consensus             ACAACTGGCCCTATCACCCTCTGAGCAGTATCAAAGACACTCAAACCCAATTGTTGAACT
 
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JMFF020F21+           TGATTGATCGTAGACTCCACCTGGGTGATGGAGGAGACTATTTCTTCTTTGGGAAAGCTG
JMFF032M10+           TGATTGATCGTAGACTCCACCTGGGTGATGGAGGAGACTATTTCTTCTTTGGGAAAGCTG
JMSF049C23+           TGATTGATCGTAGACTCCACCTGGGTGATGGAGGAGACTATTTCTTCTTTGGGAAAGCTG
                      ____________________________________________________________
consensus             TGATTGATCGTAGACTCCACCTGGGTGATGGAGGAGACTATTTCTTCTTTGGGAAAGCTG
 
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JMFF020F21+           AGAGCTTTAGCTTCATAGATAGGAGCATTGAAGAGAGCGAAGATGGAGACAGTGGAAGTG
JMFF032M10+           AGAGCTTTAGCTTCATAGATAGGAGCATTGAAGAGAGCGAAGATGGAGACAGTGGAAGTG
JMSF049C23+           AGAGCTTTAGCTTCATAGATAGGAGCATTGAAGAGAGCGAAGATGGAGACAGTGGAAGTG
                      ____________________________________________________________
consensus             AGAGCTTTAGCTTCATAGATAGGAGCATTGAAGAGAGCGAAGATGGAGACAGTGGAAGTG
 
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JMFF020F21+           GAGAGAGACAGCAACGAAGAGTTGGTAGTGGAGTAAGGCTTCGATGGCAGTTTAGCGAGA
JMFF032M10+           GAGAGAGACAGCAACGAAGAGTTGGTAGTGGAGTAAGGCTTCGATGGCAGTTTAGCGAGA
JMSF049C23+           GAGAGAGACAGCAACGAAGAGTTGGTAGTGGAGTAAGGCTTCGATGGCAGTTTAGCGAGA
                      ____________________________________________________________
consensus             GAGAGAGACAGCAACGAAGAGTTGGTAGTGGAGTAAGGCTTCGATGGCAGTTTAGCGAGA
 
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JMFF020F21+           GAAGGGGTTTTAGGTGGCAGAGAATGCGGCGGAGGAAGTGGTGGTTTTGCGGTGGCGGAA
JMFF032M10+           GAAGGGGTTTTAGGTGGCAGAGAATGCGGCGGAGGAAGTGGTGGTTTTGCGGTGGCGGAA
JMSF049C23+           GAAGGGGTTTTAGGTGGCAGAGAATGCGGCGGAGGAAGTGGTGGTTTTGCGGTGGCGGAA
                      ____________________________________________________________
consensus             GAAGGGGTTTTAGGTGGCAGAGAATGCGGCGGAGGAAGTGGTGGTTTTGCGGTGGCGGAA
 
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JMFF020F21+           GCTCTCACGGCCATTGCCATTGCCATTTCACAGCTTTGGCTCCACTCGCTGCTCACTGT 
JMFF032M10+           GCTCTCACGGCCATTGCCATTGCCATTTCACAGCTTTGGCTCCACTCGCTGCTCACTGT 
JMSF049C23+           GCTCTCACGGCCATTGCCATTGCCATTTCACAGCTTTGGCTCCACTCGCTGCTCACTGTC
                      ____________________________________________________________
consensus             GCTCTCACGGCCATTGCCATTGCCATTTCACAGCTTTGGCTCCACTCGCTGCTCACTGTC