Contig 000979:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN037J17+                             GTATTCGGCATTCACGGCAAAAGCAGCACAGCAGCAAAATGT
rJMSF022N19-                                                     GCACAGCAACAAAATGT
                      ____________________________________________________________
consensus                               GTATTCGGCATTCACGGCAAAAGCAGCACAGCAGCAAAATGT
 
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JMFN037J17+           GATCAATAACAATATAACATGGTCTCCCAATGTCAAATAAAGACAATTGAAAGCTAGTCT
rJMSF048O24-                                             AATAAAGACAATTGAAAGCTAGTCT
rJMSF022N19-          GATCAATAACAATATAACATGGTCTCCCAATGTCAAATAAAGACAATTGAAAGCTAGTCT
                      ____________________________________________________________
consensus             GATCAATAACAATATAACATGGTCTCCCAATGTCAAATAAAGACAATTGAAAGCTAGTCT
 
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JMFN037J17+           CTGTCTCTCCCATTTTTTGTTGATCTGATCATTTTATAAAAGAAACTAGAGATGAGGAGC
rJMSF048O24-          CTGTCTCTCCCATTTTTTGTTGATCTGATCATTTTATAAAAGAAACTAGAGATGAGGAGC
rJMSF022N19-          CTGTCTCTCCCATTTTTTGTTGATCTGATCATTTTATAAAAGAAACTAGAGATGAGGAGC
                      ____________________________________________________________
consensus             CTGTCTCTCCCATTTTTTGTTGATCTGATCATTTTATAAAAGAAACTAGAGATGAGGAGC
 
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JMFN037J17+           ATTATTTTTTGACAACTGGGACTACGCATCATACATTTGGTGGTGGCCATATCTTCCCAA
rJMSF048O24-          ATTATTTTTTGACAACTGGAACTACGCATCATACATTTGGTGGTGGCCATATCTTCCCAA
rJMSF022N19-          ATTATTTTTTGACAACTGGAACTACGCATCATACATTTGGTGGTGGCCATATCTTCCCAA
                      ____________________________________________________________
consensus             ATTATTTTTTGACAACTGGAACTACGCATCATACATTTGGTGGTGGCCATATCTTCCCAA
 
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JMFN037J17+           ACAACTCTTCCACCCGCTTTGCCTGATTGCTATACCCTTCCATTCCAGCAGTCAGAAGCT
rJMSF048O24-          ACAACTCTTCCACCCGCTTTGCCTGATTGCTATACCCTTCCATTCCAGCAGTCAGAAGCT
rJMSF022N19-          ACAACTCTTCCACCCGCTTTGCCTGATTGCTATACCCTTCCATTCCAGCAGTCAGAAGCT
                      ____________________________________________________________
consensus             ACAACTCTTCCACCCGCTTTGCCTGATTGCTATACCCTTCCATTCCAGCAGTCAGAAGCT
 
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JMFN037J17+           CCACAGCAGCCGGTCCCATAGCTGAGGCGAAGCTATATTGATCCCACGTCACAACCTCCT
rJMSF048O24-          CCACAGCAGCCGGTCCCATAGCTGAGGCGAAGCTATATTGATCCCACGTCACAACCTCCT
rJMSF022N19-          CCACAGCAGCCGGTCCCATAGCTGAGGCGAAGCTATATTGATCCCACGTCACAACCTCCT
                      ____________________________________________________________
consensus             CCACAGCAGCCGGTCCCATAGCTGAGGCGAAGCTATATTGATCCCACGTCACAACCTCCT
 
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JMFN037J17+           CTTTGGTAAAGTTATAGGCAGCAGCTGATTGTGGGGACAGCCTTCTTTCAAAAGAGTACT
rJMSF048O24-          CTTTGGTAAAGTTATAGGCAGCAGCTGATTGTGGGGACAGCCTTCTTTCAAAAGAGTACT
rJMSF022N19-          CTTTGGTAAAGTTATAGGCAGCAGCTGATTGTGGGGACAGCCTTCTTTCAAAAGAGTACT
                      ____________________________________________________________
consensus             CTTTGGTAAAGTTATAGGCAGCAGCTGATTGTGGGGACAGCCTTCTTTCAAAAGAGTACT
 
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JMFN037J17+           TCTCATCTGGGGGAGTTACA                                        
rJMSF048O24-          TCTCATCTGGGGGAGTTACAGATTCTTTAAGAGACTGCAATATCTTTAGTGGGGTAACAA
rJMSF022N19-          TCTCATCTGGGGGAGTTACAGATTCTTTAAGAGACTGCAATATCTTTAGTGGGGTAACAA
                      ____________________________________________________________
consensus             TCTCATCTGGGGGAGTTACAGATTCTTTAAGAGACTGCAATATCTTTAGTGGGGTAACAA
 
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rJMSF048O24-          TGTAATCAACCCCCAGAATGCTATAGACATCCTGCTTGTTCCGAATAGCCGCTGCCATCA
rJMSF022N19-          TGTAATCAACCCCCAGAATGCTATAGACATCCTGCTTGTTCCGAATAGCCGCTGCCATCA
                      ____________________________________________________________
consensus             TGTAATCAACCCCCAGAATGCTATAGACATCCTGCTTGTTCCGAATAGCCGCTGCCATCA
 
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rJMSF048O24-          ACTTCGATTTATGCCCATATTTGTGGATGTAGTTATAAGCTTTTGTCACCAGAGCAGATC
rJMSF022N19-          ACTTCGATTTATGCCCATATTTGTGGATGTAGTTATAAGCTTTTGTCACCAGAGCAGATC
                      ____________________________________________________________
consensus             ACTTCGATTTATGCCCATATTTGTGGATGTAGTTATAAGCTTTTGTCACCAGAGCAGATC
 
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rJMSF048O24-          CAGGATCTTCTCCTCTTCGAAGTGCACCTTCTACTTCAGAGTCACCAGAATGGTTCCGTG
rJMSF022N19-          CAGGATCTTCTCCTCTTCGAAGTGCACCTTCTACTTCAGAGTCACCAGAATGGTTCCGTG
                      ____________________________________________________________
consensus             CAGGATCTTCTCCTCTTCGAAGTGCACCTTCTACTTCAGAGTCACCAGAATGGTTCCGTG
 
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rJMSF048O24-          CCCAATCCCTCAGCCGACCAACAAAAATCTGAATGACAGAAGCACCAGCTTGAGCAGCTG
rJMSF022N19-          CCCAATCCCTCAGCCGACCAACAAAAATCTGAATGACAGAAGCACCAGCTTGAGCAGCTG
                      ____________________________________________________________
consensus             CCCAATCCCTCAGCCGACCAACAAAAATCTGAATGACAGAAGCACCAGCTTGAGCAGCTG
 
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rJMSF048O24-          CTGCAGCCTGAC-AAAACTGTAAACGAAAGTC-AATGGGTCTGTATGCCCTCAGCTTCCA
rJMSF022N19-          CTGCAGCCTGACAAAAACTGTAAACGAAAGTCAAATGGGTCTGTATGCCCTCAGCTTCCA
JMSF022N19+                                 AACGAAAGTCAAATGGGTCTGTATGCCNTCAGCTTCCA
JMSF048O24+                                 AACGAAAGTCAAATGGGTCTGTATGCCNTCAGCTTCCA
                      ____________________________________________________________
consensus             CTGCAGCCTGACAAAAACTGTAAACGAAAGTCAAATGGGTCTGTATGCCCTCAGCTTCCA
 
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rJMSF048O24-          GCAACCTTGATGCC                                              
rJMSF022N19-          GCAACCTTGATGCC                                              
JMSF022N19+           GCAACCTTGATGCCTCAATCCCTTGCCAAGTTGCAGGGATTTTGAACAGCAACCTCTCTG
JMSF048O24+           GCAACCTTGATGCCTCAATCCCTTGCCAAGTTGCAGGGATTTTGAACAGCAACCTCTCTG
                      ____________________________________________________________
consensus             GCAACCTTGATGCCTCAATCCCTTGCCAAGTTGCAGGGATTTTGAACAGCAACCTCTCTG
 
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JMSF022N19+           GAGGAATTTCAATCCCATTGTACAACTTCAAGAGGTCATGCACCTTTAGAACAATGCCAT
JMSF048O24+           GAGGAATTTCAATCCCATTGTACAACTTCAAGAGGTCATGCACCTTTAGAACAATGCCAT
                      ____________________________________________________________
consensus             GAGGAATTTCAATCCCATTGTACAACTTCAAGAGGTCATGCACCTTTAGAACAATGCCAT
 
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JMSF022N19+           GCGTGTCATATGCAAGACGAGCATCAACTTCAGTAGAAACACGACCAGGCACAAGTTTTG
JMSF048O24+           GCGTGTCATATGCAAGACGAGCATCAACTTCAGTAGAAACACGACCAGGCACAAGTTTTG
                      ____________________________________________________________
consensus             GCGTGTCATATGCAAGACGAGCATCAACTTCAGTAGAAACACGACCAGGCACAAGTTTTG
 
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JMSF022N19+           CTAGATCACCACCAACATTGACCAATGCCTTGTTAAAGAAACAAGACATTCGTGCATCCT
JMSF048O24+           CTAGATCACCACCAACATTGACCAATGCCTTGTTAAAGAAACAAGACATTCGTGCATCCT
                      ____________________________________________________________
consensus             CTAGATCACCACCAACATTGACCAATGCCTTGTTAAAGAAACAAGACATTCGTGCATCCT
 
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JMSF022N19+           TGTCCTCCAACCCATAACACTCCTGATCTGCTAAAGCAGTGTCCACAGCACTCTTGAATT
JMSF048O24+           TGTCCTCCAACCCATAACACTCCTGATCTGCTAAAGCAGTGTCCACAGCACTCTTGAATT
                      ____________________________________________________________
consensus             TGTCCTCCAACCCATAACACTCCTGATCTGCTAAAGCAGTGTCCACAGCACTCTTGAATT
 
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JMSF022N19+           TGGTATCAGGAAGGCTGCAGATGCCTAAGAGTAGAGATGAGCTAACAGTAGCAGCAGTTG
JMSF048O24+           TGGTATCAGGAAGGCTGCAGATGCCTAAGAGTAGAGATGAGCTAACAGTAGCAGCAGTTG
                      ____________________________________________________________
consensus             TGGTATCAGGAAGGCTGCAGATGCCTAAGAGTAGAGATGAGCTAACAGTAGCAGCAGTTG
 
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JMSF022N19+           GTGGGAACTTCTCGAAATCATCGAAAACTACAGTATCTGGAACGATCTCACTGTAATTCG
JMSF048O24+           GTGGGAACTTCTCGAAATCATCGAAAACTACAGTATCTGGAACGATCTCACTGTAATTCG
                      ____________________________________________________________
consensus             GTGGGAACTTCTCGAAATCATCGAAAACTACAGTATCTGGAACGATCTCACTGTAATTCG
 
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JMSF022N19+           TGACCGCATCCAATTCAGTAGTCAAACCTGTGTCCAGTGAAGAAGAGAATCCAGCAGAAG
JMSF048O24+           TGACCGCATCCAATTCAGTAGTCAAACCTGTGTCCAGTGAAGAAGAGAATCCAGCAGAAG
                      ____________________________________________________________
consensus             TGACCGCATCCAATTCAGTAGTCAAACCTGTGTCCAGTGAAGAAGAGAATCCAGCAGAAG
 
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JMSF022N19+           CTCGGATGACAGGAAAGCATGGCTTCGAATTGAAGGAGAGACTCGGTTTCGTAGACTGAG
JMSF048O24+           CTCGGATGACAGGAAAGCATGGCTTCGAATTGAAGGAGAGACTCGGTTTCGTAGACTGAG
                      ____________________________________________________________
consensus             CTCGGATGACAGGAAAGCATGGCTTCGAATTGAAGGAGAGACTCGGTTTCGTAGACTGAG
 
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JMSF022N19+           CTGCGAATTTCAGTTTCCTCTCCTGAGAAGCTGAAGAGGAGCGGGAGGAGGAGAAAGCAT
JMSF048O24+           CTGCGAATTTCAGTTTCCTCTCCTGAGAAGCTGAAGAGGAGCGGGAGGAGGAGAAAGCAT
                      ____________________________________________________________
consensus             CTGCGAATTTCAGTTTCCTCTCCTGAGAAGCTGAAGAGGAGCGGGAGGAGGAGAAAGCAT
 
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JMSF022N19+           AGGAGAGTGGAGAGTGCAATGTAGTCGACATTTTCAATGCGGATATTGAGTGAACT    
JMSF048O24+           AGGAGAGTGGAGAGTGCAATGTAGTCGACATTTTCAATGCGGATATTGAGTGAACTAGCC
                      ____________________________________________________________
consensus             AGGAGAGTGGAGAGTGCAATGTAGTCGACATTTTCAATGCGGATATTGAGTGAACTAGCC