Contig 000977:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031M04Sequence683000977 (4)ref|XP_009793378.1|55.1PREDICTED: uncharacterized protein LOC104240265 [Nicotiana sylvestris]671003000 (3)
JMSF031P14Sequence641014698716000977 (4)gb|ABK55710.1|6e-25L-glutamate:tRNA-Glu ligase [Cucumis sativus]
JMSF033N07Sequence651000977 (4)ref|XP_009793378.1|55.1PREDICTED: uncharacterized protein LOC104240265 [Nicotiana sylvestris]728003000 (3)
JMSF048M08Sequence670000977 (4)gb|KJB33302.1|2e-09hypothetical protein B456_006G006100 [Gossypium raimondii]781003000 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF031P14- AGGTGACCAAGTTTTACAA
                      ____________________________________________________________
consensus AGGTGACCAAGTTTTACAA
 
. : . : . : . : . : . :
rJMSF031P14- ACAACAAGGGGCGTAAAGCCCTACAAAAGCTATATGGTCCAAATGACTAAATCTACCACA
                      ____________________________________________________________
consensus ACAACAAGGGGCGTAAAGCCCTACAAAAGCTATATGGTCCAAATGACTAAATCTACCACA
 
. : . : . : . : . : . :
rJMSF031P14- AGACATGAGGCCATTCGGCCATACAAAGAGCGCAAAACTCTACAAAATGAATCAAAGCTA
                      ____________________________________________________________
consensus AGACATGAGGCCATTCGGCCATACAAAGAGCGCAAAACTCTACAAAATGAATCAAAGCTA
 
. : . : . : . : . : . :
rJMSF031P14- TTTTGGCCCTTACATACTCAAGGCCATTCGGCCTAAATTCCAACCAAGCTACAAGCTACA
                      ____________________________________________________________
consensus TTTTGGCCCTTACATACTCAAGGCCATTCGGCCTAAATTCCAACCAAGCTACAAGCTACA
 
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rJMSF031P14- AGCTCAGAACCAAGCTGACCTACTGAAGTTGCACCATGTCTTTTAGAAAGTTTGCTTCTA
                      ____________________________________________________________
consensus AGCTCAGAACCAAGCTGACCTACTGAAGTTGCACCATGTCTTTTAGAAAGTTTGCTTCTA
 
. : . : . : . : . : . :
rJMSF031P14- TCTGGAGCAAGAATTAAAGAAACATGTGCAAAGGAAGGCATTGGAAAACCAAGGGCCTTA
                      ____________________________________________________________
consensus TCTGGAGCAAGAATTAAAGAAACATGTGCAAAGGAAGGCATTGGAAAACCAAGGGCCTTA
 
. : . : . : . : . : . :
rJMSF031P14- TATATTAAAGCTTGTCTTAGAGTGTTGGGTAAATGCTCTTATGCTCTTATCATCAAAGCA
                      ____________________________________________________________
consensus TATATTAAAGCTTGTCTTAGAGTGTTGGGTAAATGCTCTTATGCTCTTATCATCAAAGCA
 
. : . : . : . : . : . :
rJMSF031P14- TCAGCTAAAACAATCAAGGCACACTCTGCATCACTGGTTCTTCTTCTTTCTAAGAGCTCT
                      ____________________________________________________________
consensus TCAGCTAAAACAATCAAGGCACACTCTGCATCACTGGTTCTTCTTCTTTCTAAGAGCTCT
 
. : . : . : . : . : . :
rJMSF031P14- GCAGATTGCTTCATGTAATTTGATAATTTTTTTAGCTGAGGATTGTTGTCTACAGCCAAT
JMSF033N07+ TTTAGCTGATGATTATTGTCTACAGCCAAT
JMSF031M04+ TTTAGCTGAGGATTATTGTCTACAGCCAAT
                      ____________________________________________________________
consensus GCAGATTGCTTCATGTAATTTGATAATTTTTTTAGCTGAGGATTATTGTCTACAGCCAAT
 
. : . : . : . : . : . :
rJMSF031P14- GGATTGTTTAAATTATCAACATCAGAGGCACTAAGGCAGAAG
JMSF033N07+ GGATTGTTTAAATTATCAACATCAGAGGCACTGAGGTAGAAGGGGGGATTCACCTAGAAT
JMSF031M04+ GGATTGTTTAAATTATCAACATCAGAGGCACTGAGGTAGAAGGGGGGATTCACCTAGAAT
                      ____________________________________________________________
consensus GGATTGTTTAAATTATCAACATCAGAGGCACTGAGGTAGAAGGGGGGATTCACCTAGAAT
 
. : . : . : . : . : . :
JMSF033N07+ GCAATAAGAACTACCATAAGAGTCATGTCAAAGAAACAAAACTAAAGCACATCATTAAGA
JMSF031M04+ GCAATAAGAACTACCATAAGAGTCATGTCAAAGAAACAAAACTAAAGCACATCATTAAGA
                      ____________________________________________________________
consensus GCAATAAGAACTACCATAAGAGTCATGTCAAAGAAACAAAACTAAAGCACATCATTAAGA
 
. : . : . : . : . : . :
JMSF033N07+ CTCGTAAATGCTGCTAAAACTAAAGCACATCATAAAAATCTGCTAACTTGTTCATCTAAA
JMSF031M04+ CTCGTAAATGCTGCTAAAACTAAAGCACATCATAAAAATCTGCTAACTTGTTCATCTAAA
                      ____________________________________________________________
consensus CTCGTAAATGCTGCTAAAACTAAAGCACATCATAAAAATCTGCTAACTTGTTCATCTAAA
 
. : . : . : . : . : . :
JMSF033N07+ AAAAATAACAGATTCATCTCAAAAAAATAACTTGGAGTTACTCAGTTTCTTCTGGCTCTG
JMSF031M04+ AAAAATAACAGATTCATCTCAAAAAAATAACTTGGAGTTACTCAGTTTCTTCTGGCTCTG
JMSF048M08+ ACTTGGAGTTACTCAGTTTCTTCTGGCTCTG
                      ____________________________________________________________
consensus AAAAATAACAGATTCATCTCAAAAAAATAACTTGGAGTTACTCAGTTTCTTCTGGCTCTG
 
. : . : . : . : . : . :
JMSF033N07+ TACAACATTCTTTAATTAGCTGGTTCTGTTCTTCATCTTTCCATGTCTTCTGTCTTCTGT
JMSF031M04+ TACAACATTCTTTAATTAGCTGGTTCTGTTCTTCATCTTTCCATGTCTTCTGTCTTCTGT
JMSF048M08+ TACAACATTCTTTAATTAGCTGGTTCTGTTCTTCATCTTTCCATGTCTTCTGTCTTCTGT
                      ____________________________________________________________
consensus TACAACATTCTTTAATTAGCTGGTTCTGTTCTTCATCTTTCCATGTCTTCTGTCTTCTGT
 
. : . : . : . : . : . :
JMSF033N07+ TTGTGTTGCTGGACAACAGAAATTTGATCTGCGGAAGTCGAGAAGTGACCTATTTTACAT
JMSF031M04+ TTGTGTTGCTGGACAACAGAAATTTGATCTGCGGAAGTCGAGAAGTGACCTATTTTACAT
JMSF048M08+ TTGTGTTGCTGGACAACAGAAATTTGATCTGCGGAAGTCGAGAAGTGACCTATTTTACAT
                      ____________________________________________________________
consensus TTGTGTTGCTGGACAACAGAAATTTGATCTGCGGAAGTCGAGAAGTGACCTATTTTACAT
 
. : . : . : . : . : . :
JMSF033N07+ TTTTACCTCTTGTTATACAAAGATTCGCGAGAAGGTGTCTTTGTATAGTTCACTGACGCC
JMSF031M04+ TTTTACCTCTTGTTATACAAAGATTCGCGAGAAGGTGTCTTTGTATAGTTCACTGACGCC
JMSF048M08+ TTTTACCTCTTGTTATACAAAGATTCGCGAGAAGGTGTCTTTGTATAGTTCACTGACGCC
                      ____________________________________________________________
consensus TTTTACCTCTTGTTATACAAAGATTCGCGAGAAGGTGTCTTTGTATAGTTCACTGACGCC
 
. : . : . : . : . : . :
JMSF033N07+ CTACGAGTAAACGAAGAATTTGGCTTCTGATCCATGAGGGAGAGAACGAGAAGGAATATC
JMSF031M04+ CTACGAGTAAACGAAGAATTTGGCTTCTGATCCATGAGGGAGAGAACGAGAAGGAATATC
JMSF048M08+ CTACGAGTAAACGAAGAATTTGGCTTCTGATCCATGAGGGAGAGAACGAGAAGGAATATC
                      ____________________________________________________________
consensus CTACGAGTAAACGAAGAATTTGGCTTCTGATCCATGAGGGAGAGAACGAGAAGGAATATC
 
. : . : . : . : . : . :
JMSF033N07+ T
JMSF031M04+ T
JMSF048M08+ TTCCGTATAGTATGTCGATGACGAGCCACGGGTAGAGAGGCGCAGACGGAGAAGACTGAG
                      ____________________________________________________________
consensus TTCCGTATAGTATGTCGATGACGAGCCACGGGTAGAGAGGCGCAGACGGAGAAGACTGAG
 
. : . : . : . : . : . :
JMSF048M08+ CGATGAACGGAGCTGAGCGGCGATGGTGAGAGACAAAGATGCGAGAGCTTTTGTAGGTGA
                      ____________________________________________________________
consensus CGATGAACGGAGCTGAGCGGCGATGGTGAGAGACAAAGATGCGAGAGCTTTTGTAGGTGA
 
. : . : . : . : . : . :
JMSF048M08+ GGAGTGAGAATAGATGAGCGGCGGAAATGAAATGAAATGAGGGTTAAGTCTCAAGTCTCC
                      ____________________________________________________________
consensus GGAGTGAGAATAGATGAGCGGCGGAAATGAAATGAAATGAGGGTTAAGTCTCAAGTCTCC