Contig 000976:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS071G07Sequence631000976 (3)ref|XP_006338202.1|2e-79PREDICTED: RNA-binding protein EWS-like [Solanum tuberosum]
JMSF048L09Sequence689000976 (3)ref|XP_009588423.1|8e-81PREDICTED: uncharacterized protein LOC104085997 isoform X1 [Nicotiana tomentosi771000976 (3)ref|XP_006338202.1|1e-57PREDICTED: RNA-binding protein EWS-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF048L09-                                                TAGGATGACAAGTGCTGAAGGG
                      ____________________________________________________________
consensus                                                   TAGGATGACAAGTGCTGAAGGG
 
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rJMSF048L09-          GAAAAAGGCACTCATCCTTTGCTCTGCGTGAGGGTTTCACGGACAGTATTAGAGGGCTGT
                      ____________________________________________________________
consensus             GAAAAAGGCACTCATCCTTTGCTCTGCGTGAGGGTTTCACGGACAGTATTAGAGGGCTGT
 
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rJMSF048L09-          ATAGTGTTTTACAAATCCATGAAACAATTTAAAAGAGTAGGAGGGGGCTTCTGTTTATAA
                      ____________________________________________________________
consensus             ATAGTGTTTTACAAATCCATGAAACAATTTAAAAGAGTAGGAGGGGGCTTCTGTTTATAA
 
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rJMSF048L09-          CACAGCATCAAATTTAATTGAACAACTACTAAAACGCATCACGGCCAGCGCGACGATCAT
                      ____________________________________________________________
consensus             CACAGCATCAAATTTAATTGAACAACTACTAAAACGCATCACGGCCAGCGCGACGATCAT
 
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rJMSF048L09-          CTCGGCCTCTGTCCACAAACAAGGGGCGACGATAGTCCTTTGGGTGTGGTGCTCTATCTC
                      ____________________________________________________________
consensus             CTCGGCCTCTGTCCACAAACAAGGGGCGACGATAGTCCTTTGGGTGTGGTGCTCTATCTC
 
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rJMSF048L09-          TGATTGGAGAGCGGCTCCTTTCTCTGATGTCTCGAGGCCACTGACCGCGAGGTGGTAGGG
JMFS071G07+                                                               TGGTAGGG
                      ____________________________________________________________
consensus             TGATTGGAGAGCGGCTCCTTTCTCTGATGTCTCGAGGCCACTGACCGCGAGGTGGTAGGG
 
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rJMSF048L09-          ATGGTAGCGGAGGTGGGGGTGGAGATGGCAGTCGCCTCTCGTAAACTTTCCTCTCGCCTA
JMFS071G07+           ATGGTAGCGGAGGTGGGGGTGGAGATGGCAGTCGCCTCTCGTAAACTTTCCTCTCGCCTA
                      ____________________________________________________________
consensus             ATGGTAGCGGAGGTGGGGGTGGAGATGGCAGTCGCCTCTCGTAAACTTTCCTCTCGCCTA
 
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rJMSF048L09-          TGTAGGTCTCCCTCCCACGATCTCTGTGGCCCCAGTCAAGTGGCAGCGGTCTATCAAATC
JMFS071G07+           TGTAGGTCTCCCTCCCACGATCTCTGTGGCCCCAGTCAAGTGGCAGCGGTCTATCAAATC
JMSF048L09+                                          CCAGTCAAGTGGCAGCGGTCTATCAAATC
                      ____________________________________________________________
consensus             TGTAGGTCTCCCTCCCACGATCTCTGTGGCCCCAGTCAAGTGGCAGCGGTCTATCAAATC
 
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rJMSF048L09-          TACCTCTATCCCTATAATCATCTTCAGGAAAATCTGGTCTATCTCTGCGCAAGGGAGGGT
JMFS071G07+           TACCTCTATCCCTATAATCATCTTCAGGAAAATCTGGTCTATCTCTGCGCAAGGGAGGGT
JMSF048L09+           TACCTCTATCCCTATAATCATCTTCAGGAAAATCTGGTCTATCTCTGCGCAAGGGAGGGT
                      ____________________________________________________________
consensus             TACCTCTATCCCTATAATCATCTTCAGGAAAATCTGGTCTATCTCTGCGCAAGGGAGGGT
 
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rJMSF048L09-          GATCATGAAACCTGCCCTCAAATCTCGGAGGAGGCATCCCAGCTCTAAAATCTCTAGGAT
JMFS071G07+           GATCATGAAACCTGCCCTCAAATCTCGGAGGAGGCATCCCAGCTCTAAAATCTCTAGGAT
JMSF048L09+           GATCATGAAACCTGCCCTCAAATCTCGGAGGAGGCATCCCAGCTCTAAAATCTCTAGGAT
                      ____________________________________________________________
consensus             GATCATGAAACCTGCCCTCAAATCTCGGAGGAGGCATCCCAGCTCTAAAATCTCTAGGAT
 
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rJMSF048L09-          CATCTCTAGCCCAGCCACGAGGAGGGGATCTAAACCCATTCATGAGCCTTCCAGGAGAAC
JMFS071G07+           CATCTCTAGCCCAGCCACGAGGAGGGGATCTAAACCCATTCATGAGCCTTCCAGGAGAAC
JMSF048L09+           CATCTCTAGCCCAGCCACGAGGAGGGGATCTAAACCCATTCATGAGCCTTCCAGGAGAAC
                      ____________________________________________________________
consensus             CATCTCTAGCCCAGCCACGAGGAGGGGATCTAAACCCATTCATGAGCCTTCCAGGAGAAC
 
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rJMSF048L09-          GATCCATAGGGGGGCCAGAAGGCCCGGGACGTCNGGTGATAGGCAGGANAGTGGCATGAC
JMFS071G07+           GATCCATAGGGGGGCCAGAAGGCCCGGGACGTCGGGTGATAGGCAGGAGAGTGGCATGAC
JMSF048L09+           GATCCATAGGGGGGCCAGAAGGCCCGGGACGTCGGGTGATAGGCAGGAGAGTGGCATGAC
                      ____________________________________________________________
consensus             GATCCATAGGGGGGCCAGAAGGCCCGGGACGTCGGGTGATAGGCAGGAGAGTGGCATGAC
 
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rJMSF048L09-          CTCTCCTAGGACTCCCAGCAGGTGCGTAACGGGGTCTATTGCAGTTGTTACAGTACTCTC
JMFS071G07+           CTCTCCTAGGACTCCCAGCAGGTGCGTAACGGGGTCTATTGCAGTTGTTACAGTACTCTC
JMSF048L09+           CTCTCCTAGGACTCCCAGCAGGTGCGTAACGGGGTCTATTGCAGTTGTTACAGTACTCTC
                      ____________________________________________________________
consensus             CTCTCCTAGGACTCCCAGCAGGTGCGTAACGGGGTCTATTGCAGTTGTTACAGTACTCTC
 
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rJMSF048L09-          GTCNAGCAAAGTTCAAGTTGTTGCNCAGG                               
JMFS071G07+           GTCGAGCAAAGTTCAAGTTGTTGCACAGGGGATCGGAGCATATCCAGTCACCTTCTCTTG
JMSF048L09+           GTCGAGCAAAGTTCAAGTTGTTGCACAGGGGATCGGAGCATATCCAGTCACCTTCTCTTG
                      ____________________________________________________________
consensus             GTCGAGCAAAGTTCAAGTTGTTGCACAGGGGATCGGAGCATATCCAGTCACCTTCTCTTG
 
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JMFS071G07+           GCCGCACATTTGGATTATTTCTAGCCACACCTTCCCCTCTAACTGATCCGGGAACATAAC
JMSF048L09+           GCCGCACATTTGGATTATTTCTAGCCACACCTTCCCCTCTAACTGATCCGGGAACATAAC
                      ____________________________________________________________
consensus             GCCGCACATTTGGATTATTTCTAGCCACACCTTCCCCTCTAACTGATCCGGGAACATAAC
 
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JMFS071G07+           CATGTCGATCATAGCCTGTAACTGGAAACCTGCCACCATCCCTTCCACGACCATAAGGGG
JMSF048L09+           CATGTCGATCATAGCCTCTAACTGGAAACCTGCCACCATCCCTTCCACGACCATAAGGGG
                      ____________________________________________________________
consensus             CATGTCGATCATAGCCTGTAACTGGAAACCTGCCACCATCCCTTCCACGACCATAAGGGG
 
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JMFS071G07+           GTGAGTAGTCTCTATATCTACCA                                     
JMSF048L09+           GTGAGTAGTCTCTATATCTACCAGGATCTCTCCCACCGCCAAATCCACGGCCATGAGGTG
                      ____________________________________________________________
consensus             GTGAGTAGTCTCTATATCTACCAGGATCTCTCCCACCGCCAAATCCACGGCCATGAGGTG
 
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JMSF048L09+           GTCCATTAGAATGATCAAAATTTGGACTGTACCTGTGATCTGTATTCCTACGGCGTACAG
                      ____________________________________________________________
consensus             GTCCATTAGAATGATCAAAATTTGGACTGTACCTGTGATCTGTATTCCTACGGCGTACAG
 
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JMSF048L09+           GAGAAACAGAACCTACACGCATTCTATATCCTCAAGAGTCAAGTTCTTGCTCCAGGCATC
                      ____________________________________________________________
consensus             GAGAAACAGAACCTACACGCATTCTATATCCTCAAGAGTCAAGTTCTTGCTCCAGGCATC