Contig 000970:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001J19Sequence529000970 (9)sp|P19173.3|COX5C_IPOBA1e-35RecName: Full=Cytochrome c oxidase subunit 5C; AltName: Full=Cytochrome c oxida498000970 (9)sp|P19173.3|COX5C_IPOBA8e-36RecName: Full=Cytochrome c oxidase subunit 5C; AltName: Full=Cytochrome c oxida
JMFF013G03Sequence519000970 (9)sp|P19173.3|COX5C_IPOBA2e-35RecName: Full=Cytochrome c oxidase subunit 5C; AltName: Full=Cytochrome c oxida485000970 (9)sp|P19173.3|COX5C_IPOBA1e-35RecName: Full=Cytochrome c oxidase subunit 5C; AltName: Full=Cytochrome c oxida
JMFS146A09Sequence482000970 (9)sp|P19173.3|COX5C_IPOBA1e-35RecName: Full=Cytochrome c oxidase subunit 5C; AltName: Full=Cytochrome c oxida
JMSF040A24Sequence515000970 (9)sp|P19173.3|COX5C_IPOBA2e-35RecName: Full=Cytochrome c oxidase subunit 5C; AltName: Full=Cytochrome c oxida463000970 (9)sp|P19173.3|COX5C_IPOBA9e-36RecName: Full=Cytochrome c oxidase subunit 5C; AltName: Full=Cytochrome c oxida
JMSF048D04Sequence698000970 (9)732000970 (9)sp|P19173.3|COX5C_IPOBA2e-34RecName: Full=Cytochrome c oxidase subunit 5C; AltName: Full=Cytochrome c oxida

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF013G03+ TTT
                      ____________________________________________________________
consensus TTT
 
. : . : . : . : . : . :
JMFF013G03+ TTTTTTTAAATGGTGGTAATGAAAAGCAAGTATATTAACCATGATAAATGTCAAAAATGA
rJMFF001J19- TGATAAATGTCAAAAATGA
JMFF001J19+ TGAAAAGCAAGTATATTAACCATGATAAATGTCAAAAATGA
JMSF040A24+ TGGTGGTAATGAAAAGCAAGTATATTAACCATGATAAATGTCAAAAATGA
rJMSF040A24- AAAATGA
JMFS146A09+ AACCATGATAAATGTCAAAAATGA
rJMFF013G03- ATATTAACCATGATAAATGTCAAAAATGA
                      ____________________________________________________________
consensus TTTTTTTAAATGGTGGTAATGAAAAGCAAGTATATTAACCATGATAAATGTCAAAAATGA
 
. : . : . : . : . : . :
JMFF013G03+ TCCATTATTTGAACAACAGTTATCCCAAGAAAACCTAAAGAGTTACTCTAGAAAGCTGTG
rJMFF001J19- TCCATTATTTGAACAACAGTTATCCCAAGAAAACCTAAAGAGTTACTCTAGAAAGCTGTG
JMFF001J19+ TCCATTATTTGAACAACAGTTATCCCAAGAAAACCTAAAGAGTTACTCTAGAAAGCTGTG
JMSF040A24+ TCCATTATTTGAACAACAGTTATCCCAAGAAAACCTAAAGAGTTACTCTAGAAAGCTGTG
rJMSF040A24- TCCATTATTTGAACAACAGTTATCCCAAGAAAACCTAAAGAGTTACTCTAGAAAGCTGTG
JMFS146A09+ TCCATTATTTGAACAACAGTTATCCCAAGAAAACCTAAAGAGTTACTCTAGAAAGCTGTG
rJMFF013G03- TCCATTATTTGAACAACAGTTATCCCAAGAAAACCTAAAGAGTTACTCTAGAAAGCTGTG
rJMSF048D04- GTTATCCCAAGAAAACCTAAAGAGTTACTCTAGAAAGCTGTG
                      ____________________________________________________________
consensus TCCATTATTTGAACAACAGTTATCCCAAGAAAACCTAAAGAGTTACTCTAGAAAGCTGTG
 
. : . : . : . : . : . :
JMFF013G03+ CAATTCTAGGGGCAACTTTTTGGCTTCCCTTAAGGCAACACAAAGTGTATCAAGAAAAAT
rJMFF001J19- CAATTCTAGGGGCAACTTTTTGGCTTCCCTTAAGGCAACACAAAGTGTATCAAGAAAAAT
JMFF001J19+ CAATTCTAGGGGCAACTTTTTGGCTTCCCTTAAGGCAACACAAAGTGTATCAAGAAAAAT
JMSF040A24+ CAATTCTAGGGGCAACTTTTTGGCTTCCCTTAAGGCAACACAAAGTGTATCAAGAAAAAT
rJMSF040A24- CAATTCTAGGGGCAACTTTTTGGCTTCCCTTAAGGCAACACAAAGTGTATCAAGAAAAAT
JMFS146A09+ CAATTCTAGGGGCAACTTTTTGGCTTCCCTTAAGGCAACACAAAGTGTATCAAGAAAAAT
rJMFF013G03- CAATTCTAGGGGCAACTTTTTGGCTTCCCTTAAGGCAACACAAAGTGTATCAAGAAAAAT
rJMSF048D04- CAATTCTAGGGGCAACTTTTTGGCTTCCCTTAAGGCAACACAAAGTGTATCAAGAAAAAT
                      ____________________________________________________________
consensus CAATTCTAGGGGCAACTTTTTGGCTTCCCTTAAGGCAACACAAAGTGTATCAAGAAAAAT
 
. : . : . : . : . : . :
JMFF013G03+ GCAGTCTTCCAGGGTTCATTCACTATGATAGTGACTTCCATACAACAGCAAAGAAATATG
rJMFF001J19- GCAGTCTTCCAGGGTTCATTCACTATGATAGTGACTTCCATACAACAGCAAAGAAATATG
JMFF001J19+ GCAGTCTTCCAGGGTTCATTCACTATGATAGTGACTTCCATACAACAGCAAAGAAATATG
JMSF040A24+ GCAGTCTTCCAGGGTTCATTCACTATGATAGTGACTTCCATACAACAGCAAAGAAATATG
rJMSF040A24- GCAGTCTTCCAGGGTTCATTCACTATGATAGTGACTTCCATACAACAGCAAAGAAATATG
JMFS146A09+ GCAGTCTTCCAGGGTTCATTCACTATGATAGTGACTTCCATACAACAGCAAAGAAATATG
rJMFF013G03- GCAGTCTTCCAGGGTTCATTCACTATGATAGTGACTTCCATACAACAGCAAAGAAATATG
rJMSF048D04- GCAGTCTTCCAGGGTTCATTCACTATGATAGTGACTTCCATACAACAGCAAAGAAATATG
                      ____________________________________________________________
consensus GCAGTCTTCCAGGGTTCATTCACTATGATAGTGACTTCCATACAACAGCAAAGAAATATG
 
. : . : . : . : . : . :
JMFF013G03+ TAAATGAAGTCTATTCTTCATCTGCAACAACACTGATCTGACCCTTCTCGAGCATGTCAT
rJMFF001J19- TAAATGAAGTCTATTCTTCATCTGCAACAACACTGATCTGACCCTTCTCGAGCATGTCAT
JMFF001J19+ TAAATGAAGTCTATTCTTCATCTGCAACAACACTGATCTGACCCTTCTCGAGCATGTCAT
JMSF040A24+ TAAATGAAGTCTATTCTTCATCTGCAACAACACTGATCTGACCCTTCTCGAGCATGTCAT
rJMSF040A24- TAAATGAAGTCTATTCTTCATCTGCAACAACACTGATCTGACCCTTCTCGAGCATGTCAT
JMFS146A09+ TAAATGAAGTCTATTCTTCATCTGCAACAACACTGATCTGACCCTTCTCGAGCATGTCAT
rJMFF013G03- TAAATGAAGTCTATTCTTCATCTGCAACAACACTGATCTGACCCTTCTCGAGCATGTCAT
rJMSF048D04- TAAATGAAGTCTATTCTTCATCTGCAACAACACTGATCTGACCCTTCTCGAGCATGTCAT
                      ____________________________________________________________
consensus TAAATGAAGTCTATTCTTCATCTGCAACAACACTGATCTGACCCTTCTCGAGCATGTCAT
 
. : . : . : . : . : . :
JMFF013G03+ AGAATTCTTTCATTCTCCTCTGGCTGTTCCAGTGGTGCATTTTCCAGAAGCCACCAGCTA
rJMFF001J19- AGAATTCTTTCATTCTCCTCTGGCTGTTCCAGTGGTGCATTTTCCAGAAGCCACCAGCTA
JMFF001J19+ AGAATTCTTTCATTCTCCTCTGGCTGTTCCAGTGGTGCATTTTCCAGAAGCCACCAGCTA
JMSF040A24+ AGAATTCTTTCATTCTCCTCTGGCTGTTCCAGTGGTGCATTTTCCAGAAGCCACCAGCTA
rJMSF040A24- AGAATTCTTTCATTCTCCTCTGGCTGTTCCAGTGGTGCATTTTCCAGAAGCCACCAGCTA
JMFS146A09+ AGAATTCTTTCATTCTCCTCTGGCTGTTCCAGTGGTGCATTTTCCAGAAGCCACCAGCTA
rJMFF013G03- AGAATTCTTTCATTCTCCTCTGGCTGTTCCAGTGGTGCATTTTCCAGAAGCCACCAGCTA
rJMSF048D04- AGAATTCTTTCATTCTCCTCTGGCTGTTCCAGTGGTGCATTTTCCAGAAGCCACCAGCTA
                      ____________________________________________________________
consensus AGAATTCTTTCATTCTCCTCTGGCTGTTCCAGTGGTGCATTTTCCAGAAGCCACCAGCTA
 
. : . : . : . : . : . :
JMFF013G03+ TGAGTCCAAGGCTAAAACCAATAACAAGCTCTTTGACAACACTTGGACCCTTGTATACCA
rJMFF001J19- TGAGTCCAAGGCTAAAACCAATAACAAGCTCTTTGACAACACTTGGACCCTTGTATACCA
JMFF001J19+ TGAGTCCAAGGCTAAAACCAATAACAAGCTCTTTGACAACACTTGGACCCTTGTATACCA
JMSF040A24+ TGAGTCCAAGGCTAAAACCAATAACAAGCTCTTTGACAACACTTGGACCCTTGTATACCA
rJMSF040A24- TGAGTCCAAGGCTAAAACCAATAACAAGCTCTTTGACAACACTTGGACCCTTGTATACCA
JMFS146A09+ TGAGTCCAAGGCTAAAACCAATAACAAGCTCTTTGACAACACTTGGACCCTTGTATACCA
rJMFF013G03- TGAGTCCAAGGCTAAAACCAATAACAAGCTCTTTGACAACACTTGGACCCTTGTATACCA
rJMSF048D04- TGAGTCCAAGGCTAAAACCAATAACAAGCTCTTTGACAACACTTGGACCCTTGTATACCA
                      ____________________________________________________________
consensus TGAGTCCAAGGCTAAAACCAATAACAAGCTCTTTGACAACACTTGGACCCTTGTATACCA
 
. : . : . : . : . : . :
JMFF013G03+ CATGTGCAACATGACCACCCGCCATTCTTGAGCAGAAGCACCAGAAAGCTGAGACGAGAG
rJMFF001J19- CATGTGCAACATGACCACCCGCCATTCTT
JMFF001J19+ CATGTGCAACATGACCACCCGCCATTCTT
JMSF040A24+ CATGTGCAACATGACCACCCGCCATTCTTGAGCAGAAGCACCAGAAAGCTGAGACGAGAG
rJMSF040A24- CATGTGCAACATGACCACCCGCCATTCTTGAGCAGAAGCACCAGAAAGCTGAGACGAGAG
JMFS146A09+ CATGTGCAACATGACCACCCGCCATTCTTGAGCAGAAGCACCAGAAAGCTGAGACGAGAG
rJMFF013G03- CATGTGCAACATGACCACCCGCCATTCTTGAGCAGAAGCACCAGAAAGCTGAGACGAGAG
rJMSF048D04- CATGTGCAACATGACCACCCGCCATTCTTCTG-AGGGTTACAAAATAGAACTTGTTAAAA
                      ____________________________________________________________
consensus CATGTGCAACATGACCACCCGCCATTCTTGAGCAGAAGCACCAGAAAGCTGAGACGAGAG
 
. : . : . : . : . : . :
JMFF013G03+ AGAAAGAGATCCGCTTGAGAAGGTAAAGGCGATTTC
JMSF040A24+ AGAAAGAGATCCGCTTGAGAAGGTAAAGGCGATTTC
rJMSF040A24- AGAAAGAGATCCGCTTGAGAAGGTAAAGGCGATTTC
JMFS146A09+ AGAAAGAGATCCGCTT
rJMFF013G03- AGAAAGAGATCCGCTTGAGAAGGTAAAGGCGATTTC
rJMSF048D04- AAAAAATACTCCGTAACAACATGCAATTTTGAATAACATTGAAGTTCTAAGCATTCAGAA
                      ____________________________________________________________
consensus AGAAAGAGATCCGCTTGAGAAGGTAAAGGCGATTTCCATTGAAGTTCTAAGCATTCAGAA
 
. : . : . : . : . : . :
rJMSF048D04- CAGCATCATTAAAACAGTAAAATTACTCACCAATAGCAACAGCGTACACATGAAACACGT
                      ____________________________________________________________
consensus CAGCATCATTAAAACAGTAAAATTACTCACCAATAGCAACAGCGTACACATGAAACACGT
 
. : . : . : . : . : . :
rJMSF048D04- CACGACATGACTATATTACTCTATAATAGAAAGTGCTGCATATATTGCTCTATGATAGAA
JMSF048D04+ ATAATAGAAAGTGCTGCATATATTGCTCTATGATAGAA
                      ____________________________________________________________
consensus CACGACATGACTATATTACTCTATAATAGAAAGTGCTGCATATATTGCTCTATGATAGAA
 
. : . : . : . : . : . :
rJMSF048D04- AGTGAATATTATATTACTCTATAATAGAAAGTGATGCATATATTACTCTATAATATTAAG
JMSF048D04+ AGTGAATATTATATTACTCTATAATAGAAAGTGATGCATATATTACTCTATAATATTAAG
                      ____________________________________________________________
consensus AGTGAATATTATATTACTCTATAATAGAAAGTGATGCATATATTACTCTATAATATTAAG
 
. : . : . : . : . : . :
rJMSF048D04- TGATCTATATATTGTTCCATAATATCAAGCATGAGCTATTGAAGCAGTATGAACCAAAAA
JMSF048D04+ TGATCTATATATTGTTCCATAATATCAAGCATGAGCTATTGAAGCAGTATGAACCAAAAA
                      ____________________________________________________________
consensus TGATCTATATATTGTTCCATAATATCAAGCATGAGCTATTGAAGCAGTATGAACCAAAAA
 
. : . : . : . : . : . :
rJMSF048D04- TCTGTTATGGATAACCCATTACCA
JMSF048D04+ TCTGTTATGGATAACCCATTACCAATGGATGTGGGGAAAAATGACACTTATTTTCAATTA
                      ____________________________________________________________
consensus TCTGTTATGGATAACCCATTACCAATGGATGTGGGGAAAAATGACACTTATTTTCAATTA
 
. : . : . : . : . : . :
JMSF048D04+ ACAGAGACTCGCCAACACAAAATTTAGAGGTCTCATCACTACAAAACATAGGGCAATCTG
                      ____________________________________________________________
consensus ACAGAGACTCGCCAACACAAAATTTAGAGGTCTCATCACTACAAAACATAGGGCAATCTG
 
. : . : . : . : . : . :
JMSF048D04+ AACAAAGATCCTAAAAGCACATCCCATTATGCAATCAGTCGGAATAGATCCGATCTTTAA
                      ____________________________________________________________
consensus AACAAAGATCCTAAAAGCACATCCCATTATGCAATCAGTCGGAATAGATCCGATCTTTAA
 
. : . : . : . : . : . :
JMSF048D04+ TATAACCCAATTAATTGTTCAGCATATTACACGTAAATTAACAAAAACAAAGGCAATTCG
                      ____________________________________________________________
consensus TATAACCCAATTAATTGTTCAGCATATTACACGTAAATTAACAAAAACAAAGGCAATTCG
 
. : . : . : . : . : . :
JMSF048D04+ AGTAATCCAAGTATAGCTTCATCCTAAATATGTTATCCAGCACTAATCTAGCAGCTTAGC
                      ____________________________________________________________
consensus AGTAATCCAAGTATAGCTTCATCCTAAATATGTTATCCAGCACTAATCTAGCAGCTTAGC
 
. : . : . : . : . : . :
JMSF048D04+ ATCGATTTAGGCAAAGTCGTAAGAAGAAAAGAGGAAGTCAAACAAATCCAATATTCAAAC
                      ____________________________________________________________
consensus ATCGATTTAGGCAAAGTCGTAAGAAGAAAAGAGGAAGTCAAACAAATCCAATATTCAAAC
 
. : . : . : . : . : . :
JMSF048D04+ ATACGACCCTAATTTTTTTCGCCTGTATTCAAGTCTCAACATTAATTTTTATGCTCAAAT
                      ____________________________________________________________
consensus ATACGACCCTAATTTTTTTCGCCTGTATTCAAGTCTCAACATTAATTTTTATGCTCAAAT
 
. : . : . : . : . : . :
JMSF048D04+ AAATAAATAACAAAACAGAAACGTGAGATTCAAAGCAAGGGATCCGGGATTGACTTACGA
                      ____________________________________________________________
consensus AAATAAATAACAAAACAGAAACGTGAGATTCAAAGCAAGGGATCCGGGATTGACTTACGA
 
. : . : . : . : . : . :
JMSF048D04+ GCAGAAGCACCAGAAAGCTGAGACGAGAGAGAAAGAGATCCGCTTGAGAAGGTAAAGGCC
                      ____________________________________________________________
consensus GCAGAAGCACCAGAAAGCTGAGACGAGAGAGAAAGAGATCCGCTTGAGAAGGTAAAGGCC