Contig 000954:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005E06Sequence456000954 (3)ref|XP_006362049.1|117PREDICTED: ATP-dependent RNA helicase DBP2-like [Solanum tuberosum]541012642 (3)emb|CDP19193.1|6e-15unnamed protein product [Coffea canephora]
JMSF026N10Sequence667000954 (3)ref|XP_011089533.1|4e-73PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum]765012642 (3)ref|XP_011089533.1|4e-59PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum]
JMSF045L16Sequence780000954 (3)ref|XP_011089533.1|3e-95PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum]702012642 (3)ref|XP_011089533.1|1e-35PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF045L16+ AGGAATCAAGAGATCTACTGAAAGCTTTAACCTCTGTTTCTATTTGTTGTGCAAGCTCTC
                      ____________________________________________________________
consensus AGGAATCAAGAGATCTACTGAAAGCTTTAACCTCTGTTTCTATTTGTTGTGCAAGCTCTC
 
. : . : . : . : . : . :
JMSF026N10+ GTCGTAGAGGAGGCTGAGCTA
JMSF045L16+ TTGTAGGTGCCAATACCAATGCCAATGGTCCATCACCACGTCGTAGAGGAGGCTGAGCTA
                      ____________________________________________________________
consensus TTGTAGGTGCCAATACCAATGCCAATGGTCCATCACCACGTCGTAGAGGAGGCTGAGCTA
 
. : . : . : . : . : . :
JMSF026N10+ GGCAGTGCTGAATCATTGGTATAGTGAATGCAGCAGTTTTTCCACTCCCAGTTTCTGCAC
JMSF045L16+ GGCAGTGCTGAATCATTGGTATAGTGAATGCAGCAGTTTTTCCACTCCCAGTTTCTGCAC
                      ____________________________________________________________
consensus GGCAGTGCTGAATCATTGGTATAGTGAATGCAGCAGTTTTTCCACTCCCAGTTTCTGCAC
 
. : . : . : . : . : . :
JMSF026N10+ AACCCAAAAGGTCCCTCCCACTAAGGGCAACTGGCATGGCTTGAGCTTGAACAGAGGTAG
JMSF045L16+ AACCCAAAAGGTCCCTCCCACTAAGGGCAACTGGCATGGCTTGAGCTTGAACAGAGGTAG
                      ____________________________________________________________
consensus AACCCAAAAGGTCCCTCCCACTAAGGGCAACTGGCATGGCTTGAGCTTGAACAGAGGTAG
 
. : . : . : . : . : . :
JMSF026N10+ GGATAGTATAATCATGCAGTGCAATATCCTTCATGATGCTCGGGTGCAAGCACATATCAG
JMSF045L16+ GGATAGTATAATCATGCAGTGCAATATCCTTCATGATGCTCGGGTGCAAGCACATATCAG
                      ____________________________________________________________
consensus GGATAGTATAATCATGCAGTGCAATATCCTTCATGATGCTCGGGTGCAAGCACATATCAG
 
. : . : . : . : . : . :
JMSF026N10+ TGAACGATTCTACAGGTGCAGGCGCAGGATTTGAATCCATAGCAACTGCAACATCAACAT
JMSF005E06+ TACAGGTGCAGGCGCAGGATTTGAATCCATAGCAACTGCAACATCAACAT
JMSF045L16+ TGAACGATTCTACAGGTGCAGGCGCAGGATTTGAATCCATAGCAACTGCAACATCAACAT
                      ____________________________________________________________
consensus TGAACGATTCTACAGGTGCAGGCGCAGGATTTGAATCCATAGCAACTGCAACATCAACAT
 
. : . : . : . : . : . :
JMSF026N10+ TAAGTCTCAAGCGAATCTCTTCTATCTGTTCAAGTTTAAACAGGAGAACACGTTCGGACG
JMSF005E06+ TAAGTCTCAAGCGAATCTCTTCTATCTGTTCAAGTTTAAACAGGAGAACACGTTCGGACG
JMSF045L16+ TAAGTCTCAAGCGAATCTCTTCTATCTGTTCAAGTTTAAACAGGAGAACACGTTCGGACG
                      ____________________________________________________________
consensus TAAGTCTCAAGCGAATCTCTTCTATCTGTTCAAGTTTAAACAGGAGAACACGTTCGGACG
 
. : . : . : . : . : . :
JMSF026N10+ GTTTCCACTGAGGAAAGACGGGGTCAGGCGCGACTAGACCTCTCGGTGACAAGTAATTAA
JMSF005E06+ GTTTCCACTGAGGAAAGACGGGGTCAGGCGCGACTAGACCTCTCGGTGACAAGTAATTAA
JMSF045L16+ GTTTCCACTGAGGAAAGACGGGGTCAGGCGCGACTAGACCTCTCGGTGACAAGTAATTAA
                      ____________________________________________________________
consensus GTTTCCACTGAGGAAAGACGGGGTCAGGCGCGACTAGACCTCTCGGTGACAAGTAATTAA
 
. : . : . : . : . : . :
JMSF026N10+ CGGTAGCGCATGAGTTCCGGCCGGCATCATTCGAGCAGTATTCACCATTACTGATAAAAC
JMSF005E06+ CGGTAGCGCATGAGTTCCGGCCGGCATCATTCGAGCAGTATTCACCATTACTGATAAAAC
JMSF045L16+ CGGTAGCGCATGAGTTCCGGCCGGCATCATTCGAGCAGTATTCACCATTACTGATAAAAC
                      ____________________________________________________________
consensus CGGTAGCGCATGAGTTCCGGCCGGCATCATTCGAGCAGTATTCACCATTACTGATAAAAC
 
. : . : . : . : . : . :
JMSF026N10+ CGTTCTTCGATTGAGTAAATGACGGCAATTGGCGAGAGTTGAGCTCCGAGTGCAAGTGAT
JMSF005E06+ CGTTCTTCGATTGAGTAAATGACGGCAATTGGCGAGAGTTGAGCTCCGAGTGCAAGTGAT
JMSF045L16+ CGTTCTTCGATTGAGTAAATGACGGCAATTGGCGAGAGTTGAGCTCCGAGTGCAAGTGAT
                      ____________________________________________________________
consensus CGTTCTTCGATTGAGTAAATGACGGCAATTGGCGAGAGTTGAGCTCCGAGTGCAAGTGAT
 
. : . : . : . : . : . :
JMSF026N10+ CGCCGCCGTTGCTCACCACAGTGGTGGCGGTGGTGGAGTTTCTCAGGTGAGGAGGTACAT
JMSF005E06+ CGCCGCCGTTGCTCACCACAGTGGTGGCGGTGGTGGAGTTTCTCAGGTGAGGAGGTACAT
JMSF045L16+ CGCCGCCGTTGCTCACCACAGTGGTGGCGGTGGTGGAGTTTCTCAGGTGAGGAGGTACAT
                      ____________________________________________________________
consensus CGCCGCCGTTGCTCACCACAGTGGTGGCGGTGGTGGAGTTTCTCAGGTGAGGAGGTACAT
 
. : . : . : . : . : . :
JMSF026N10+ AAGACATTGCTCGATTTTCTTCTCGCTGGATAAGATGAGGGAGATGGTCACTGAAAAGAG
JMSF005E06+ AAGACATTGCTCGATTTTCTTCTCGCTGGATAAGATGAGGGAGATGGTCACTGAAAAGAG
JMSF045L16+ AAGACATTGCTCGATTTTCTTCTCGCTGGATAAGATGAGGGAGATGGTCACTGAAAAGAG
                      ____________________________________________________________
consensus AAGACATTGCTCGATTTTCTTCTCGCTGGATAAGATGAGGGAGATGGTCACTGAAAAGAG
 
. : . : . : . : . : . :
JMSF026N10+ AAATTCTAGAGAGAGAAATGAGTGAGCTCTGAGATATAAACCGA
JMSF005E06+ AAATTCTAGAGAGAGAAATGAGTGAGCTCTGAGATATAAACCGA
JMSF045L16+ AAATTCTAGAGAGAGAAATGAGTGAGCTCTGAGATATAAACCGATACGGCGATACTAGTC
                      ____________________________________________________________
consensus AAATTCTAGAGAGAGAAATGAGTGAGCTCTGAGATATAAACCGATACGGCGATACTAGTC