Contig 000939: Sequence
BLAST Hits against nr-aa DB Show
Alignment
This contig is upended
. : . : . : . : . : . :
JMSF004J22- GGGAA
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consensus GGGAA
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JMSF004J22- GGGAAAAGTCCTGTGAGTCTCAGGAGGATTGGGATTTTCCATATTTACTCTCCCCTGATG
JMSF045G14- GACTCTCCCCTGATG
rJMSF045G14+ GACTCTCCCCTGATG
rJMSF043M22+ GACTCTCCCCTGATG
JMSF043M22- GACTCTCCCCTGATG
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consensus GGGAAAAGTCCTGTGAGTCTCAGGAGGATTGGGATTTTCCATATTGACTCTCCCCTGATG
. : . : . : . : . : . :
JMSF004J22- ACTTAGAAAGAAATAAAGAAAGACAGATTCATCATGCTGATATCTGCTATAAACTATGTT
JMSF045G14- ACTTAGAAAGAAATAAAGAAAGACAGATTCATCATGCTGATATCTGCTATAAACTATGTT
rJMSF045G14+ ACTTAGAAAGAAATAAAGAAAGACAGATTCATCATGCTGATATCTGCTATAAACTATGTT
rJMSF043M22+ ACTTAGAAAGAAATAAAGAAAGACAGATTCATCATGCTGATATCTGCTATAAACTATGTT
JMSF043M22- ACTTAGAAAGAAATAAAGAAAGACAGATTCATCATGCTGATATCTGCTATAAACTATGTT
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consensus ACTTAGAAAGAAATAAAGAAAGACAGATTCATCATGCTGATATCTGCTATAAACTATGTT
. : . : . : . : . : . :
JMSF004J22- TCAGGAGCACTATATGTAAAGGGAGCAGACACCCGAGAAAGACGAAACATTACA-GAAGA
JMSF045G14- TCAGGAGCACTATATGTAAAGGGAGCAGACACCCGAGAAAGACGAAACATTACAGGAAGA
rJMSF045G14+ TCAGGAGCACTATATGTAAAGGGAGCAGACACCCGAGAAAGACGAAACATTACAGGAAGA
rJMSF043M22+ TCAGGAGCACTATATGTAAAGGGAGCAGACACCCGAGAAAGACGAAACATTACAGGAAGA
JMSF043M22- TCAGGAGCACTATATGTAAAGGGAGCAGACACCCGAGAAAGACGAAACATTACAGGAAGA
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consensus TCAGGAGCACTATATGTAAAGGGAGCAGACACCCGAGAAAGACGAAACATTACAGGAAGA
. : . : . : . : . : . :
JMSF004J22- GTGAAGGCGCAAGGCAGGAGAGAGCTTCTCTTTTCGACATTAGCAGCTGTCGAAATCAGT
rJMSF004J22+ TTAGCAGCNGTNGAAATCAGT
rJMSF004J24+ GACATTAGCAGCTGTCGAAATCAGT
JMSF045G14- GTGAAGGCGCAAGGCAGGAGAGAGCTTCTCTTTTCGACATTAGCAGCTGTCGAAATCAGT
rJMSF045G14+ GTGAAGGCGCAAGGCAGGAGAGAGCTTCTCTTTTCGACATTAGCAGCTGTCGAAATCAGT
rJMSF043M22+ GTGAAGGCGCAAGGCAGGAGAGAGCTTCTCTTTTCGACATTAGCAGCTGTCGAAATCAGT
JMSF043M22- GTGAAGGCGCAAGGCAGGAGAGAGCTTCTCTTTTCGACATTAGCAGCTGTCGAAATCAGT
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consensus GTGAAGGCGCAAGGCAGGAGAGAGCTTCTCTTTTCGACATTAGCAGCTGTCGAAATCAGT
. : . : . : . : . : . :
JMSF004J22- GACTCCNAAACCGAGCTTCTTAACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
rJMSF004J22+ GACTCCANAACCGAGCTTCTTNACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
rJMSF004J24+ GNCTCCAAAACCGAGCTTCTTAACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
JMSF045G14- GACTCCAAAACCGAGCTTCTTAACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
rJMSF045G14+ GACTCCAAAACCGAGCTTCTTAACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
rJMSF043M22+ GACTCCAAAACCGAGCTTCTTAACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
JMSF043M22- GACTCCAAAACCGAGCTTCTTAACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
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consensus GACTCCAAAACCGAGCTTCTTAACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
. : . : . : . : . : . :
JMSF004J22- AATGACNAGGAGAGGCTGGAGAGCTACTATNAGCGCA
rJMSF004J22+ AATGACAAGGAGAGGCTGGAGAGCTCCTATANGCGCAACTACAAAGACTATTTTGGTGTG
rJMSF004J24+ AATGACAAGGAGAGGCTGGAGAGCTNCTATAAGCGCAACTACAAAGACTATTTTGGTGTG
JMSF045G14- AATGACAAGGAGAGGCTGGAGAGCTACTATAAGCGCAACTACAAAGACTATTTTGGTGTG
rJMSF045G14+ AATGACAAGGAGAGGCTGGAGAGCTACTATAAGCGCAACTACAAAGACTATTTTGGTGTG
rJMSF043M22+ AATGACAAGGAGAGGCTGGAGAGCTACTATAAGCGCAACTACAAAGACTATTTTGGTGTG
JMSF043M22- AATGACAAGGAGAGGCTGGAGAGCTACTATAAGCGCAACTACAAAGACTATTTTGGTGTG
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consensus AATGACAAGGAGAGGCTGGAGAGCTACTATAAGCGCAACTACAAAGACTATTTTGGTGTG
. : . : . : . : . : . :
rJMSF004J22+ TTAGAAGGGACTCTGAGGCAAAANTTGGAAAACAAAGATGCAAATTTCTGAATCAGAGCA
rJMSF004J24+ TTAGAAGGGACTCTGAGGCAAAAGTTGGAAAACAAAGATGCAAATTTCTGAATCAGAGCA
JMSF045G14- TTAGAAGGGACTCTGAGGCAAAAGTTGGAAAACAAAGA-GCAAATTTCTGAATCAGAGCA
rJMSF045G14+ TTAGAAGGGACTCTGAGGCAAAAGTTGGAAAACAAAGA-GCAAATTTCTGAATCAGAGCA
rJMSF043M22+ TTAGAAGGGACTCTGAGGCAAAAGTTGGAAAACAAAGA-GCAAATTTCTGAATCAGAGCA
JMSF043M22- TTAGAAGGGACTCTGAGGCAAAAGTTGGAAAACAAAGA-GCAAATTTCTGAATCAGAGCA
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consensus TTAGAAGGGACTCTGAGGCAAAAGTTGGAAAACAAAGA-GCAAATTTCTGAATCAGAGCA
. : . : . : . : . : . :
rJMSF004J22+ GAAGATTCTTGAATGGC
rJMSF004J24+ GAAGATTCNTGAATGGCTTGACAAAAACAAGTAAATTACCTATGCCTAGACGTAAGGGAA
JMSF045G14- GAAGATTCTTGAATGGCTTGACAAAAACAAGTAAATTA-CTATGACTAGATGTAAGGGAA
rJMSF045G14+ GAAGATTCTTGAATGGCTTGACAAAAACAAGTAAATTA-CTATGACTAGATGTAAGGGAA
rJMSF043M22+ GAAGATTCTTGAATGGCTTGACAAAAACAAGTAAATTA-CTATGACTAGATGTAAGGGAA
JMSF043M22- GAAGATTCTTGAATGGCTTGACAAAAACAAGTAAATTA-CTATGACTAGATGTAAGGGAA
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consensus GAAGATTCTTGAATGGCTTGACAAAAACAAGTAAATTA-CTATGACTAGATGTAAGGGAA
. : . : . : . : . : . :
rJMSF004J24+ TATGTCTGTTCAGATAAATCT
JMSF045G14- TATGTCTGTTCAGATAAATCTTGTGTTTCGAAGCAAAGTTAAAGCATTTGAAATGCAGAG
rJMSF045G14+ TATGTCTGTTCAGATAAATCTTGTGTTTCGAAGCAAAGTTAAAGCATTTGAAATGCAGAG
rJMSF043M22+ TATGTCTGTTCAGATAAATCTTGTGTTTCGAAGCAAAGTTAAAGCATTTGAAATGCAGAG
JMSF043M22- TATGTCTGTTCAGATAAATCTTGTGTTTCGAAGCAAAGTTAAAGCATTTGAAATGCAGAG
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consensus TATGTCTGTTCAGATAAATCTTGTGTTTCGAAGCAAAGTTAAAGCATTTGAAATGCAGAG
. : . : . : . : . : . :
JMSF045G14- ATAGAGCAATCAAGAACATTGGCACCCACGGTTTTTCCCTCATTCTGCTACTTCATTTCA
rJMSF045G14+ ATAGAGCAATCAAGAACATTGGCACCCACGGTTTTTCCCTCATTCTGCTACTTCATTTCA
rJMSF043M22+ ATAGAGCAATCAAGAACATTGGCACCCACGGTTTTTCCCTCATTCTGCTACTTCATTTC
JMSF043M22- ATAGAGCAATCAAGAACATTGGCACCCACGGTTTTTCCCTCATTCTGCTACTTCATTTCA
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consensus ATAGAGCAATCAAGAACATTGGCACCCACGGTTTTTCCCTCATTCTGCTACTTCATTTCA
. : . : . : . : . : . :
JMSF045G14- ATCTGTGTATTTGCTTTAATTTCGGGTTGGGTATTGATGAACTACAAGCTAAAAAAAAAA
rJMSF045G14+ ATCTGTGTATTTGCTT
JMSF043M22- ATCTGTGTATTTGCTTTAATTTCGGGTTGGGTATTGATGAACTACAAGCTAAAAAAAAAA
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consensus ATCTGTGTATTTGCTTTAATTTCGGGTTGGGTATTGATGAACTACAAGCTAAAAAAAAAA