Contig 000918:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014A12Sequence460000918 (2)ref|XP_011078871.1|2e-18PREDICTED: pentatricopeptide repeat-containing protein At5g24830 isoform X2 [Se734012557 (2)ref|XP_007156131.1|3e-06hypothetical protein PHAVU_003G261200g [Phaseolus vulgaris] gb|ESW28125.1| hypot
JMSF042C16Sequence809000918 (2)emb|CDP14455.1|2e-57unnamed protein product [Coffea canephora]736012557 (2)ref|XP_007156131.1|4e-07hypothetical protein PHAVU_003G261200g [Phaseolus vulgaris] gb|ESW28125.1| hypot

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF042C16+ TCCGGGGTAATACCATGGTTAGACATTGTTG
                      ____________________________________________________________
consensus TCCGGGGTAATACCATGGTTAGACATTGTTG
 
. : . : . : . : . : . :
JMSF042C16+ AAAATATATCTAGAGCTCTATCCACATTATTATTACGGCAATAACCTTTAATTAAGGTAT
                      ____________________________________________________________
consensus AAAATATATCTAGAGCTCTATCCACATTATTATTACGGCAATAACCTTTAATTAAGGTAT
 
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JMSF042C16+ TATATGTAGCACAACTAGGAGTAGGGCCCCTGTATAGCATCTCTTTGATAAGCCACTCTG
                      ____________________________________________________________
consensus TATATGTAGCACAACTAGGAGTAGGGCCCCTGTATAGCATCTCTTTGATAAGCCACTCTG
 
. : . : . : . : . : . :
JMSF042C16+ CCTTCTCCAAATCACCAGCCTTGCTTAGTCCGTTGATAAGATAGTTGTACGTAAATACAT
                      ____________________________________________________________
consensus CCTTCTCCAAATCACCAGCCTTGCTTAGTCCGTTGATAAGATAGTTGTACGTAAATACAT
 
. : . : . : . : . : . :
JMSF042C16+ CAGGACTGACAAATTTATGTATCATCTTGCTCCAAAGAGACAAAGCAGGCCCCAGTTTAC
                      ____________________________________________________________
consensus CAGGACTGACAAATTTATGTATCATCTTGCTCCAAAGAGACAAAGCAGGCCCCAGTTTAC
 
. : . : . : . : . : . :
JMSF014A12+ CACAATGCTCTGATGATGTGTTCGTCATTACGCAACTTTGACTTTGATATGC
JMSF042C16+ CTTCCTTGCACAATGCTCTGATGATGTGTTCGTCATTACGCAACTTTGACTTTGATATGC
                      ____________________________________________________________
consensus CTTCCTTGCACAATGCTCTGATGATGTGTTCGTCATTACGCAACTTTGACTTTGATATGC
 
. : . : . : . : . : . :
JMSF014A12+ TATCAAAGCCAATGCAAGTCCATGATTTTCTTTCCCTCATAGTCTTTAATCGGTCCAACA
JMSF042C16+ TATCAAAGCCAATGCAAGTCCATGATTTTCTTTCCCTCATAGTCTTTAATCGGTCCAACA
                      ____________________________________________________________
consensus TATCAAAGCCAATGCAAGTCCATGATTTTCTTTCCCTCATAGTCTTTAATCGGTCCAACA
 
. : . : . : . : . : . :
JMSF014A12+ TGTCCTTCAACATTGAATCCAATACATTGAAGACCGCACCTGTGTCTTCACCCTGATTTG
JMSF042C16+ TGTCCTTCAACATTGAATCCAATACATTGAAGACCGCACCTGTGTCTTCACCCTGAT--G
                      ____________________________________________________________
consensus TGTCCTTCAACATTGAATCCAATACATTGAAGACCGCACCTGTGTCTTCACCCTGATTTG
 
. : . : . : . : . : . :
JMSF014A12+ GAGGCAACTCATTCCTCTCTGATGGAATTGCACTTCGCATAATGCCA-----TCTTGTAT
JMSF042C16+ GAGGCAACTCATTCCTCTCTGATGGAATTGCACTTCGCATAATGCCATCTTTTCTTGTAT
                      ____________________________________________________________
consensus GAGGCAACTCATTCCTCTCTGATGGAATTGCACTTCGCATAATGCCATCTTTTCTTGTAT
 
. : . : . : . : . : . :
JMSF014A12+ TGATTAATTTTGAGCTGGGATTGGAGCAGAAAAAATCAGCAAAAAGAATATCAATTTGGT
JMSF042C16+ TGATTAATTTTGAGCTGGGATTGGAGCAGAAAAAATCAGCAAAAAGAATATCAATTTGGT
                      ____________________________________________________________
consensus TGATTAATTTTGAGCTGGGATTGGAGCAGAAAAAATCAGCAAAAAGAATATCAATTTGGT
 
. : . : . : . : . : . :
JMSF014A12+ ATCTGATAGAGTCTAGGACTTGGAAGCTACCATTCAATATCCGGAGAAGAAAATGAGATT
JMSF042C16+ ATCTGATAGAGTCTAGGACTTGGAAGCTACCATTCAATATCCGGAGAAGAAAATGAGATT
                      ____________________________________________________________
consensus ATCTGATAGAGTCTAGGACTTGGAAGCTACCATTCAATATCCGGAGAAGAAAATGAGATT
 
. : . : . : . : . : . :
JMSF014A12+ CTGAAGCTACTAACATCATTGTGATTGAGGATCGGAACCAATCTACAGAGCTTCGTCTTG
JMSF042C16+ CTGAAGCTACTAACATCATTGTGATTGAGGATCGGAACCAATCTACAGAGCTTCGTCTTG
                      ____________________________________________________________
consensus CTGAAGCTACTAACATCATTGTGATTGAGGATCGGAACCAATCTACAGAGCTTCGTCTTG
 
. : . : . : . : . : . :
JMSF014A12+ CTCTGTCGGTCTTTCTTGTCCTCCGCCGCAGACAAGCTTTCGAGCAATCAC
JMSF042C16+ CTCTGTCGGTCTTTCTTGTCCTCCGCCGCAGACAAGCTTTCGAGCAATCACTGAAGCTCC
                      ____________________________________________________________
consensus CTCTGTCGGTCTTTCTTGTCCTCCGCCGCAGACAAGCTTTCGAGCAATCACTGAAGCTCC
 
. : . : . : . : . : . :
JMSF042C16+ CTGAATCTGAACTTCCCTGCTGTTCCGTGGCAGGCCGAAAGGGTTTCCTACGCTAAATCC
                      ____________________________________________________________
consensus CTGAATCTGAACTTCCCTGCTGTTCCGTGGCAGGCCGAAAGGGTTTCCTACGCTAAATCC