| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014N21 | Sequence | 502 | 000914 (4) | ref|XP_009587605.1| | 1e-77 | PREDICTED: SNW/SKI-interacting protein-like [Nicotiana tomentosiformis] ref|XP_0 | 736 | 002557 (3) | ref|XP_002530606.1| | 1e-93 | nuclear protein skip, putative [Ricinus communis] gb|EEF31786.1| nuclear protein |
| JMFF015O14 | Sequence | 588 | 000914 (4) | ref|XP_009587605.1| | 4e-86 | PREDICTED: SNW/SKI-interacting protein-like [Nicotiana tomentosiformis] ref|XP_0 | |||||
| JMSF033L16 | Sequence | 584 | 000914 (4) | ref|XP_009587605.1| | 2e-78 | PREDICTED: SNW/SKI-interacting protein-like [Nicotiana tomentosiformis] ref|XP_0 | 706 | 002557 (3) | gb|KHG23995.1| | 3e-91 | SNW domain-containing 1 [Gossypium arboreum] |
| JMSF041O13 | Sequence | 788 | 000914 (4) | ref|XP_009587605.1| | 2e-99 | PREDICTED: SNW/SKI-interacting protein-like [Nicotiana tomentosiformis] ref|XP_0 | 591 | 002557 (3) | ref|XP_002530606.1| | 5e-73 | nuclear protein skip, putative [Ricinus communis] gb|EEF31786.1| nuclear protein |
This contig is upended
. : . : . : . : . : . :
JMSF041O13+ GAAGATTG
____________________________________________________________
consensus GAAGATTG
. : . : . : . : . : . :
JMFF015O14+ TTCTCAAGGGC
JMSF041O13+ TGTGGGAACATTTTTGGGCTGTGCAGCACTCAACCTCACATTCACAATCTTCTCAAGGGC
____________________________________________________________
consensus TGTGGGAACATTTTTGGGCTGTGCAGCACTCAACCTCACATTCACAATCTTCTCAAGGGC
. : . : . : . : . : . :
JMFF015O14+ TGCTTTCGTCTCCATGGTGGTGTCCTCAATTATCTTCTGCAACTCATCACTGTCCATCTC
JMSF033L16+ CATGGTGGTGTCNTCAATTATCTTNTGCAACTCATCACTGTCCATCTC
JMSF041O13+ TGCTTTCGTCTCCATGGTGGTGTCCTCAATTATCTTCTGCAACTCATCACTGTCCATCTC
____________________________________________________________
consensus TGCTTTCGTCTCCATGGTGGTGTCCTCAATTATCTTCTGCAACTCATCACTGTCCATCTC
. : . : . : . : . : . :
JMFF015O14+ TTCATCGTCTTCATCATCTTTCACAACCTTGGGAATAAGGTCTTTATGCTGAGAATACAC
JMSF033L16+ TTCATCGTCTTCATCATCTTTCACAACCTTGGGAATAAGGTCTTTATGCTGAGAATACAC
JMFF014N21+ TGGGAATAAGGTCTTTATGCTGAGAATACAC
JMSF041O13+ TTCATCGTCTTCATCATCTTTCACAACCTTGGGAATAAGGTCTTTATGCTGAGAATACAC
____________________________________________________________
consensus TTCATCGTCTTCATCATCTTTCACAACCTTGGGAATAAGGTCTTTATGCTGAGAATACAC
. : . : . : . : . : . :
JMFF015O14+ AATTTTCTTTGAATTTTCATTCTGCTTCACAATTGCATCATATCTCACATCACCATGCTC
JMSF033L16+ AATTTTCTTNGAATTTTCATTNTGCTTCACAATTGCATCATATCTCACATCACCATGCTC
JMFF014N21+ AATTTTCTTTGAATTTTCATTCTGCTTCACAATTGCATCATATCTCACATCACCATGCTC
JMSF041O13+ AATTTTCTTTGAATTTTCATTCTGCTTCACAATTGCATCATATCTCACATCACCATGCTC
____________________________________________________________
consensus AATTTTCTTTGAATTTTCATTCTGCTTCACAATTGCATCATATCTCACATCACCATGCTC
. : . : . : . : . : . :
JMFF015O14+ ATCAACAGTAACAGGTAATGTCTTGTTCGCAGGTTTCCAGTCCTTTTTTCTCCCCATATC
JMSF033L16+ ATCAACAGTAACAGGTAATGTCTTGTTCGCAGGTTTCCAGTCCTTTTTTCTCCCCATATC
JMFF014N21+ ATCAACAGTAACAGGTAATGTCTTGTTCGCAGGTTTCCAGTCCTTTTTTCTCCCCATATC
JMSF041O13+ ATCAACAGTAACAGGTAATGTCTTGTTCGCAGGTTTCCAGTCCTTTTTTCTCCCCATATC
____________________________________________________________
consensus ATCAACAGTAACAGGTAATGTCTTGTTCGCAGGTTTCCAGTCCTTTTTTCTCCCCATATC
. : . : . : . : . : . :
JMFF015O14+ AAGAGGATACTGTGCATAATGAATTTCAGGGAATGCACCTCCATCCCCAAAATCCTCAAG
JMSF033L16+ AAGAGGATACTGTGCATAATGAATTTCAGGGAATGCACCTCCATCCCCAAAATCCTCAAG
JMFF014N21+ AAGAGGATACTGTGCATAATGAATTTCAGGGAATGCACCTCCATCCCCAAAATCCTCAAG
JMSF041O13+ AAGAGGATACTGTGCATAATGAATTTCAGGGAATGCACCTCCATCCCCAAAATCCTCAAG
____________________________________________________________
consensus AAGAGGATACTGTGCATAATGAATTTCAGGGAATGCACCTCCATCCCCAAAATCCTCAAG
. : . : . : . : . : . :
JMFF015O14+ CTTAGATGGCCTAAATCCAGCCCTTTTCATATAAGGGGGCACTGGGTTTGCCTTGATAAC
JMSF033L16+ CTTAGATGGCCTAAATCCAGCCCTTTTCATATAAGGGGGCACTGGGTTTGCCTTGATAAC
JMFF014N21+ CTTAGATGGCCTAAATCCAGCCCTTTTCATATAAGGGGGCACTGGGTTTGCCTTGATAAC
JMSF041O13+ CTTAGATGGCCTAAATCCAGCCCTTTTCATATAAGGGGGCACTGGGTTTGCCTTGATAAC
____________________________________________________________
consensus CTTAGATGGCCTAAATCCAGCCCTTTTCATATAAGGGGGCACTGGGTTTGCCTTGATAAC
. : . : . : . : . : . :
JMFF015O14+ TGCATTTTTCTCTTCCTCAGCACCACTATATCTGTTCTTAAACCATGGATCATTTGTGTG
JMSF033L16+ TGCATTTTTCTCTTCCTCAGCACCACTATATCTGTTCTTAAACCATGGATCATTTGTGTG
JMFF014N21+ TGCATTTTTCTCTTCCTCAGCACCACTATATCTGTTCTTAAACCATGGATCATTTGTGTG
JMSF041O13+ TGCATTTTTCTCTTCCTCAGCACCACTATATCTGTTCTTAAACCATGGATCATTTGTGTG
____________________________________________________________
consensus TGCATTTTTCTCTTCCTCAGCACCACTATATCTGTTCTTAAACCATGGATCATTTGTGTG
. : . : . : . : . : . :
JMFF015O14+ GTCATAATGCGTAGCACTACTTGACTTTACTTGTGGTAGAAGGTCCCTCAGAGTAGCCAT
JMSF033L16+ GTCATAATGCGTAGCACTACTTGACTTTACTTGTGGTAGAAGGTCCCTCAGAGTAGCCAT
JMFF014N21+ GTCATAATGCGTAGCACTACTTGACTTTACTTGTGGTAGAAGGTCCCTCAGAGTAGCCAT
JMSF041O13+ GTCATAATGCGTAGCACTACTTGACTTTACTTGTGGTAGAAGGTCCCTCAGAGTAGCCAT
____________________________________________________________
consensus GTCATAATGCGTAGCACTACTTGACTTTACTTGTGGTAGAAGGTCCCTCAGAGTAGCCAT
. : . : . : . : . : . :
JMFF015O14+ GCTGGGAGGCGAAGACTTTAACCTG
JMSF033L16+ GCTGGGAGGCGAAGACTTTAAC
JMFF014N21+ GCTGGGAGGCGAAGACTTTAACCTGCACCAAATGCTGA
JMSF041O13+ GCTGGGAGGCGAAGACTTTAACCTGCACCAAATGCTGAACTATAAACCCAGAATTGAGAC
____________________________________________________________
consensus GCTGGGAGGCGAAGACTTTAACCTGCACCAAATGCTGAACTATAAACCCAGAATTGAGAC
. : . : . : . : . : . :
JMSF041O13+ CTGGACAATGTAAAACCTTTATGATTCAAGGGACAAAACCCTAGGCCACGAAACGCAACT
____________________________________________________________
consensus CTGGACAATGTAAAACCTTTATGATTCAAGGGACAAAACCCTAGGCCACGAAACGCAACT
. : . : . : . : . : . :
JMSF041O13+ CTAAATCTGATCTGAGCTGATCTGAGCTAATAAGACCGCACGGCTAGTTGTCTTCTCCGA
____________________________________________________________
consensus CTAAATCTGATCTGAGCTGATCTGAGCTAATAAGACCGCACGGCTAGTTGTCTTCTCCGA
. : . : . : . : . : . :
JMSF041O13+ GCAGGATAAGGAAAGCCATTTGCGGAGGGATTGTTTGGTCTGCAGTATTTATTGCGCCCC
____________________________________________________________
consensus GCAGGATAAGGAAAGCCATTTGCGGAGGGATTGTTTGGTCTGCAGTATTTATTGCGCCCC