| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004N13 | Sequence | 479 | 000895 (4) | sp|P55004.1|PHYE_IPONI | 5e-89 | RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea | 761 | 008497 (4) | sp|P55004.1|PHYE_IPONI | 3e-123 | RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea |
| JMSF018B15 | Sequence | 377 | 000895 (4) | sp|P55004.1|PHYE_IPONI | 4e-65 | RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea | 464 | 008497 (4) | sp|P55004.1|PHYE_IPONI | 5e-16 | RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea |
| JMSF027M20 | Sequence | 670 | 000895 (4) | sp|P55004.1|PHYE_IPONI | 3e-134 | RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea | 721 | 008497 (4) | sp|P55004.1|PHYE_IPONI | 4e-112 | RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea |
| JMSF039H06 | Sequence | 682 | 000895 (4) | sp|P55004.1|PHYE_IPONI | 8e-138 | RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea | 853 | 008497 (4) | sp|P55004.1|PHYE_IPONI | 2e-136 | RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea |
This contig is upended
. : . : . : . : . : . :
JMSF027M20+ GCCTAGAAATA
JMSF039H06+ GAGCGACTGAAGCCTAGAAATA
____________________________________________________________
consensus GAGCGACTGAAGCCTAGAAATA
. : . : . : . : . : . :
JMSF027M20+ GCCCGAACCGCGAGTTTCTGTGATTGCACTGCCTCAGCAAGAAGCAGTGCAGGATCAGCA
JMSF039H06+ GCCCGAACCGCGAGTTTCTGTGATTGCACTGCCCCAGCAAGAAGCAGTGCAGGATCAGCA
____________________________________________________________
consensus GCCCGAACCGCGAGTTTCTGTGATTGCACTGCCTCAGCAAGAAGCAGTGCAGGATCAGCA
. : . : . : . : . : . :
JMSF027M20+ GAGTTGGCAGGTTCCAAATCAATCACAATCCCTACATCAATCCTGTGGAGTACAGCATAA
JMSF039H06+ GAGTTGGCAGGTTCCAAATCAATCACAATCCCTACATCAATCCTGTGGAGTACAGCATAA
____________________________________________________________
consensus GAGTTGGCAGGTTCCAAATCAATCACAATCCCTACATCAATCCTGTGGAGTACAGCATAA
. : . : . : . : . : . :
JMSF027M20+ AAAGGCTTTTGATTAATCTTAGAATGTACCCAAATTGGGTTCAAAAGAGAAATTTCCCTA
JMFF004N13+ CTA
JMSF039H06+ AAAGGCTTTTGATTAATCTTAGAATGTACCCAAATTGGGTTCAAAAGAGAAATTTCCCTA
____________________________________________________________
consensus AAAGGCTTTTGATTAATCTTAGAATGTACCCAAATTGGGTTCAAAAGAGAAATTTCCCTA
. : . : . : . : . : . :
JMSF027M20+ GATGCCACAGCCTTGGCCAAAGAAGCCCTTGAAGAAAGGGTGAAAAGAGTCCTAGCATCA
JMFF004N13+ GATGCCACAGCCTTGGCCAAAGAAGCCCTTGAAGAAAGGGTGAAAAGAGTCCTAGCATCA
JMSF039H06+ GATGCCACAGCCTTGGCCAAAGAAGCCCTTGAAGAAAGGGTGAAAAGAGTCCTAGCATCA
____________________________________________________________
consensus GATGCCACAGCCTTGGCCAAAGAAGCCCTTGAAGAAAGGGTGAAAAGAGTCCTAGCATCA
. : . : . : . : . : . :
JMSF027M20+ ATCCCAATCAAACTCATCCGCTCCGGAGGCTCAACACCACTCTTCAAACCCAGCAAATCA
JMFF004N13+ ATCCCAATCAAACTCATCCGCTCCGGAGGCTCAACACCACTCTTCAAACCCAGCAAATCA
JMSF018B15+ TTCAAACCCAGCAAATCA
JMSF039H06+ ATCCCAATCAAACTCATCCGCTCCGGAGGCTCAACACCACTCTTCAAACCCAGCAAATCA
____________________________________________________________
consensus ATCCCAATCAAACTCATCCGCTCCGGAGGCTCAACACCACTCTTCAAACCCAGCAAATCA
. : . : . : . : . : . :
JMSF027M20+ AAGCAATTCTCACTAAACCCTACAATCTTGAAACTGGGTTCTTCAATTGCAAGCATACAA
JMFF004N13+ AAGCAATTCTCACTAAACCCTACAATCTTGAAACTGGGTTCTTCAATTGCAAGCATACAA
JMSF018B15+ AAGCAATTCTCACTAAACCCTACAATCTTGAAACTGGGTTCTTCAATTGCAAGCATACAA
JMSF039H06+ AAGCAATTCTCACTAAACCCTACAATCTTGAAACTGGGTTCTTCAATTGCAAGCATACAA
____________________________________________________________
consensus AAGCAATTCTCACTAAACCCTACAATCTTGAAACTGGGTTCTTCAATTGCAAGCATACAA
. : . : . : . : . : . :
JMSF027M20+ CCAAAGGGTTGGATAAGCCCACCCCTCTGGATTCTTGATAGATAAGCAGTCATTTCTTCT
JMFF004N13+ CCAAAGGGTTGGATAAGCCCACCCCTCTGGATTCTTGATAGATAAGCAGTCATTTCTTCT
JMSF018B15+ CCAAAGGGTTGGATAAGCCCACCCCTCTGGATTCTTGATAGATAAGCAGTCATTTCTTCT
JMSF039H06+ CCAAAGGGTTGGATAAGCCCACCCCTCTGGATTCTTGATAGATAAGCAGTCATTTCTTCT
____________________________________________________________
consensus CCAAAGGGTTGGATAAGCCCACCCCTCTGGATTCTTGATAGATAAGCAGTCATTTCTTCT
. : . : . : . : . : . :
JMSF027M20+ TCAGTCACATTCTGTGGGGCATGAATAACAGACCTGGAGTAGTCGAAGGACTTACCCGAC
JMFF004N13+ TCAGTCACATTCTGTGGGGCATGAATAACAGACCTGGAGTAGTCGAAGGACTTACCCGAC
JMSF018B15+ TCAGTCACATTCTGTGGGGCATGAATAACAGACCTGGAGTAGTCGAAGGACTTACCCGAC
JMSF039H06+ TCAGTCACATTCTGTGGGGCATGAATAACAGACCTGGAGTAGTCGAAGGACTTACCCGAC
____________________________________________________________
consensus TCAGTCACATTCTGTGGGGCATGAATAACAGACCTGGAGTAGTCGAAGGACTTACCCGAC
. : . : . : . : . : . :
JMSF027M20+ TCCCTGGACTGCTCAAACTCAGCCATTAGCTTCGCATCAGCATTGTACTGAGCTATGGCC
JMFF004N13+ TCCCTGGACTGCTCAAACTCAGCCATTAGCTTCGCATCAGCATTGTACTGAGCTATGGCC
JMSF018B15+ TCCCTGGACTGCTCAAACTCAGCCATTAGCTTCGCATCAGCATTGTACTGAGCTATGGCC
JMSF039H06+ TCCCTGGACTGCTCAAACTCAGCCATTAGCTTCGCATCAGCATTGTACTGAGCTATGGCC
____________________________________________________________
consensus TCCCTGGACTGCTCAAACTCAGCCATTAGCTTCGCATCAGCATTGTACTGAGCTATGGCC
. : . : . : . : . : . :
JMSF027M20+ TTGCCGGTGTTCAAGTTGCTAGTAGCAGACGAAGAAAAGGTCACAGCTTTGCCATAATTC
JMFF004N13+ TTGCCGGTGTTCAAGTTGCTAGTAGCAGACGAAGAAAAGGTCACAGCTTTGCCATAATTC
JMSF018B15+ TTGCCGGTGTTCAAGTTGCTAGTAGCAGACGAAGAAAAGGTCACAGCTTTGCCATAATTC
JMSF039H06+ TTGCCGGTGTTCAAGTTGCTAGTAGCAGACGAAGAAAAGGTCACAGCTTTGCCATAATTC
____________________________________________________________
consensus TTGCCGGTGTTCAAGTTGCTAGTAGCAGACGAAGAAAAGGTCACAGCTTTGCCATAATTC
. : . : . : . : . : . :
JMSF027M20+ TCCATTTTCTTGCTTGTGGGTGGTTTCTTCTTTTCCTTGCTTTGCAAATCCATCCT
JMFF004N13+ TCCATTTTCTTGCTTGTGGGTGGTTTCTTCTTTTCCTTGCTTTGCAAATCCATCCT
JMSF018B15+ TCCATTTTCTTGCTTGTGGGTGGTTTCTTCTTTTCCTTGCTTTGCAAATCCATCCT
JMSF039H06+ TCCATTTTCTTGCTTGTGGGTGGTTTCTTCTTTTCCTTGCTTTGCAAATCCATCCTGTGC
____________________________________________________________
consensus TCCATTTTCTTGCTTGTGGGTGGTTTCTTCTTTTCCTTGCTTTGCAAATCCATCCTGTGC