Contig 000884:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040M22Sequence348000884 (6)ref|XP_009624390.1|3e-31PREDICTED: two pore calcium channel protein 1A-like [Nicotiana tomentosiformis]672001176 (4)sp|Q75VR0.1|TPC1B_TOBAC2e-63RecName: Full=Two pore calcium channel protein 1B; AltName: Full=Voltage-depende
JMFS107E02Sequence627000884 (6)ref|NP_001268025.1|8e-65two pore channel 1 [Vitis vinifera] gb|ACH53197.1| two pore channel 1 [Vitis vin
JMFS142G02Sequence626000884 (6)ref|NP_001268025.1|4e-62two pore channel 1 [Vitis vinifera] gb|ACH53197.1| two pore channel 1 [Vitis vin
JMSF025C07Sequence684000884 (6)ref|NP_001268025.1|5e-61two pore channel 1 [Vitis vinifera] gb|ACH53197.1| two pore channel 1 [Vitis vin764001176 (4)ref|XP_006357480.1|3e-86PREDICTED: two pore calcium channel protein 1B-like [Solanum tuberosum]
JMSF037N05Sequence615000884 (6)ref|NP_001268025.1|3e-62two pore channel 1 [Vitis vinifera] gb|ACH53197.1| two pore channel 1 [Vitis vin670001176 (4)ref|XP_006357480.1|9e-68PREDICTED: two pore calcium channel protein 1B-like [Solanum tuberosum]
JMSF044A06Sequence746000884 (6)ref|XP_010097904.1|1e-82Two pore calcium channel protein 1A [Morus notabilis] gb|EXB72967.1| Two pore ca747001176 (4)ref|XP_006357480.1|7e-89PREDICTED: two pore calcium channel protein 1B-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF044A06+                                                               AGCTACAG
                      ____________________________________________________________
consensus                                                                 AGCTACAG
 
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JMSF044A06+           AACAGAAGAAATGAAACTGACAAAACCATGACATTAAGGTAGGTTCCAGACATTCCAGCA
                      ____________________________________________________________
consensus             AACAGAAGAAATGAAACTGACAAAACCATGACATTAAGGTAGGTTCCAGACATTCCAGCA
 
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JMSF044A06+           AGGATCACGATGCTGTCTCTCAATTCCCTGATATTGAGAATGAAAAATACAACCCGTACA
JMFS107E02+                                                                   TACA
                      ____________________________________________________________
consensus             AGGATCACGATGCTGTCTCTCAATTCCCTGATATTGAGAATGAAAAATACAACCCGTACA
 
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JMSF044A06+           TAGGGTGCAGCCCTGAATGGCAGATAATACAAGCCAGCTATGGAGAGAACATAGACCACC
JMFS107E02+           TAGGGTGCAGCCCTGAATGGCAGATAATACAAGCCAGCTATGGAGAGAACATAGACCACC
JMFS142G02+                                          AGCCAGCTATGGAGAGAACATAGACCACC
JMSF025C07+                                          AGCCAGCTATGGAGAGAACATAGACCACC
                      ____________________________________________________________
consensus             TAGGGTGCAGCCCTGAATGGCAGATAATACAAGCCAGCTATGGAGAGAACATAGACCACC
 
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JMSF044A06+           AGATCTGCAACCAAAACTAACAGCAATAGGACCTTTAACCTATTGAGGATGCTTCTCCAG
JMFS107E02+           AGATCTGCAACCAAAACTAACAGCAATAGGACCTTTAACCTATTGAGGATGCTTCTCCAG
JMFS142G02+           AGATCTGCAACCAAAACTAACAGCAATAGGACCTTTAACCTATTGAGGATGCTTCTCCAG
JMSF025C07+           AGATCTGCAACCAAAACTAACAGCAATAGGACCTTTAACCTATTGAGGATGCTTCTCCAG
JMSF037N05+                                                        AGGATGCTTCTCCAG
                      ____________________________________________________________
consensus             AGATCTGCAACCAAAACTAACAGCAATAGGACCTTTAACCTATTGAGGATGCTTCTCCAG
 
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JMSF044A06+           TATATCTGAAAACCTTCATATGATATTGGAAATAAAGCATGTGTCACAAGAATTACAAGA
JMFS107E02+           TATATCTGAAAACCTTCATATGATATTGGAAATAAAGCATGTGTCACAAGAATTACAAGA
JMFS142G02+           TATATCTGAAAACCTTCATATGATATTGGAAATAAAGCATGTGTCACAAGAATTACAAGA
JMSF025C07+           TATATCTGAAAACCTTCATATGATATTGGAAATAAAGCATGTGTCACAAGAATTACAAGA
JMSF037N05+           TATATCTGAAAACCTTCATATGATATTGGAAATAAAGCATGTGTCACAAGAATTACAAGA
                      ____________________________________________________________
consensus             TATATCTGAAAACCTTCATATGATATTGGAAATAAAGCATGTGTCACAAGAATTACAAGA
 
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JMSF044A06+           GTAACACCCTCATATACAAGAGACCCAGTGTTAGTCAAGTAAGGCAGCTGCCCAAGAAAG
JMFS107E02+           GTAACACCCTCATATACAAGAGACCCAGTGTTAGTCAAGTAAGGCAGCTGCCCAAGAAAG
JMFS142G02+           GTAACACCCTCATATACAAGAGACCCAGTGTTAGTCAAGTAAGGCAGCTGCCCAAGAAAG
JMSF025C07+           GTAACACCCTCATATACAAGAGACCCAGTGTTAGTCAAGTAAGGCAGCTGCCCAAGAAAG
JMSF037N05+           GTAACACCCTCATATACAAGAGACCCAGTGTTAGTCAAGTAAGGCAGCTGCCCAAGAAAG
                      ____________________________________________________________
consensus             GTAACACCCTCATATACAAGAGACCCAGTGTTAGTCAAGTAAGGCAGCTGCCCAAGAAAG
 
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JMSF044A06+           TAGTACTGTCTGTCACTGCAGCCATAAGCAGACTGTTTGGAGCACCATAGTGGTTTCTCA
JMFS107E02+           TAGTACTGTCTGTCACTGCAGCCATAAGCAGACTGTTTGGAGCACCATAGTGGTTTCTCA
JMFS142G02+           TAGTACTGTCTGTCACTGCAGCCATAAGCAGACTGTTTGGAGCACCATAGTGGTTTCTCA
JMSF025C07+           TAGTACTGTCTGTCACTGCAGCCATAAGCAGACTGTTTGGAGCACCATAGTGGTTTCTCA
JMFF040M22+                                                       CCATAGTGGTTTCTCA
JMSF037N05+           TAGTACTGTCTGTCACTGCAGCCATAAGCAGACTGTTTGGAGCACCATAGTGGTTTCTCA
                      ____________________________________________________________
consensus             TAGTACTGTCTGTCACTGCAGCCATAAGCAGACTGTTTGGAGCACCATAGTGGTTTCTCA
 
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JMSF044A06+           AGAAAGTTCAGAACAATCAAAGCAAAATAGTTTAGGGACCATAGGAAATCAAATCGTGTA
JMFS107E02+           AGAAAGTTCAGAACAATCAAAGCAAAATAGTTTAGGGACCATAGGAAATCAAATCGTGTA
JMFS142G02+           AGAAAGTTCAGAACAATCAAAGCAAAATAGTTTAGGGACCATAGGAAATCAAATCGTGTA
JMSF025C07+           AGAAAGTTCAGAACAATCAAAGCAAAATAGTTTAGGGACCATAGGAAATCAAATCGTGTA
JMFF040M22+           AGAAAGTTCAGAACAATCAAAGCAAAATAGTTTAGGGACCATAGGAAATCAAATCGTGTA
JMSF037N05+           AGAAAGTTCAGAACAATCAAAGCAAAATAGTTTAGGGACCATAGGAAATCAAATCGTGTA
                      ____________________________________________________________
consensus             AGAAAGTTCAGAACAATCAAAGCAAAATAGTTTAGGGACCATAGGAAATCAAATCGTGTA
 
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JMSF044A06+           AATATGAAGTATAACTTTGCTGCACTTGCAAAGCTTGATTGATCAAGGATTTCCTCAGGT
JMFS107E02+           AATATGAAGTATAACTTTGCTGCACTTGCAAAGCTTGATTGATCAAGGATTTCCTCAGGT
JMFS142G02+           AATATGAAGTATAACTTTGCTGCACTTGCAAAGCTTGATTGATCAAGGATTTCCTCAGGT
JMSF025C07+           AATATGAAGTATAACTTTGCTGCACTTGCAACGCTTGATTGATCAAGGATTTCCTCAGGT
JMFF040M22+           AATATGAAGTATAACTTTGCTGCACTTGCAAAGCTTGATTGATCAAGGATTTCCTCAGGT
JMSF037N05+           AATATGAAGTATAACTTTGCTGCACTTGCAAAGCTTGATTGATCAAGGATTTCCTCAGGT
                      ____________________________________________________________
consensus             AATATGAAGTATAACTTTGCTGCACTTGCAAAGCTTGATTGATCAAGGATTTCCTCAGGT
 
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JMSF044A06+           ATCCCAACACCATCTTCAGCAAGATCAACCAAAGCAGCGGCCTTCTGGTAAGTGGATCCG
JMFS107E02+           ATCCCAACACCATCTTCAGCAAGATCAACCAAAGCAGCGGCCTTCTGGTAAGTGGATCCG
JMFS142G02+           ATCCCAACACCATCTTCAGCAAGATCAACCAAAGCAGCGGCCTTCTGGTAAGTGGATCCG
JMSF025C07+           ATCCCAACACCATCTTCAGCAAGATCAACCAAAGCAGCGGCCTTCTGGTAAGTGGATCCG
JMFF040M22+           ATCCCAACACCATCTTCAGCAAGATCAACCAAAGCAGCGGCCTTCTGGTAAGTGGATCCG
JMSF037N05+           ATCCCAACACCATCTTCAGCAAGATCAACCAAAGCAGCGGCCTTCTGGTAAGTGGATCCG
                      ____________________________________________________________
consensus             ATCCCAACACCATCTTCAGCAAGATCAACCAAAGCAGCGGCCTTCTGGTAAGTGGATCCG
 
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JMSF044A06+           TACACAATTGCATCTGATCGGCTACTGAAAGCGCGTCGCCGGAAGAGCCGGAGGGGACCG
JMFS107E02+           TACACAATTGCATCTGATCGGCTACTGAAAGCGCGTCGCCGGAAGAGCCGGAGGGGACCG
JMFS142G02+           TACACAATTGCATCTGATCGGCTACTGAAAGCGCGTCGCCGGAAGAGCCGGAGGGGACCG
JMSF025C07+           TACACAATTGCATCTGATCGGCTACTGAAAGCGCGTCGCCGGAAGAGCCGGAGGGGACCG
JMFF040M22+           TACACAATTGCATCTGATCGGCTACTGAAAGCGCGTCGCCGGAAGAGCCGGAGGGGACCG
JMSF037N05+           TACACAATTGCATCTGATCGGCTACTGAAAGCGCGTCGCCGGAAGAGCCGGAGGGGACCG
                      ____________________________________________________________
consensus             TACACAATTGCATCTGATCGGCTACTGAAAGCGCGTCGCCGGAAGAGCCGGAGGGGACCG
 
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JMSF044A06+           GAACCACCACCACTTCCGCTGCTCTCTCCACTCAGTAGAGCAGTCTCCATCTTGGCTTAT
JMFS107E02+           GAACCACCACCACTTCCGCTGCTCTCTCCACTCAGTAGAGCAGTCTCCATCTTGGCTTAT
JMFS142G02+           GAACCACCACCACTTCCGCTGCTCTCTCCACTCAGTAGAGCAGTCTCCATCTTGGCTTAT
JMSF025C07+           GAACCACCACCACTTCCGCTGCTCTCTCCACTCAGTAGAGCAGTCTCCATCTTGGCTTAT
JMFF040M22+           GAACCACCACCACTTCCGCTGCTCTCTCCACTCAGTAGAGCAGTCTCCATCTTGGCTTAT
JMSF037N05+           GAACCACCACCACTTCCGCTGCTCTCTCCACTCAGTAGAGCAGTCTCCATCTTGGCTTAT
                      ____________________________________________________________
consensus             GAACCACCACCACTTCCGCTGCTCTCTCCACTCAGTAGAGCAGTCTCCATCTTGGCTTAT
 
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JMSF044A06+           CTGTAACTATTGCTTC                                            
JMFS107E02+           CTGTAACTATTGCTTCTGGATCA                                     
JMFS142G02+           CTGTAACTATTGCTTCTGGATCAGGTACGTACCAATGCCGACACTAACAAAA        
JMSF025C07+           CTGTAACTATTGCTTCTGGATCAGGTACGTACCAATGCCGACACTAACAAAATCACAATG
JMFF040M22+           CTGTAACTATTGCTTCTGGATCAGGTACGT                              
JMSF037N05+           CTGTAACTATTGCTTCTGGATCAGGTACGTACCAATGCCGACACTAACAAAATCACAATG
                      ____________________________________________________________
consensus             CTGTAACTATTGCTTCTGGATCAGGTACGTACCAATGCCGACACTAACAAAATCACAATG
 
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JMSF025C07+           TAGCGGAAAACCAGAAGACGAACTGTGTTGTGTGCGCACTACTTTTGAATGCAT      
JMSF037N05+           TAGCGGAAAACCAGAAGACGAACTGTGTTGTGTGCGCACTACTTTTGAATGCATACATCC
                      ____________________________________________________________
consensus             TAGCGGAAAACCAGAAGACGAACTGTGTTGTGTGCGCACTACTTTTGAATGCATACATCC