Contig 000872:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011L05Sequence548000872 (7)dbj|BAD91200.1|6e-25sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter 667005365 (6)dbj|BAD91200.1|6e-52sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter
JMFF015P23Sequence500000872 (7)dbj|BAD91200.1|1e-12sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter 611005365 (6)dbj|BAD91200.1|1e-37sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter
JMFS035A10Sequence610000872 (7)dbj|BAD91200.1|9e-45sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter
JMFS042H10Sequence614000872 (7)dbj|BAD91200.1|1e-44sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter
JMSF001D04Sequence315000872 (7)760005365 (6)dbj|BAD91200.1|7e-82sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter
JMSF026H12Sequence653000872 (7)dbj|BAD91200.1|2e-47sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter 761005365 (6)dbj|BAD91200.1|9e-114sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter
JMSF036F23Sequence672000872 (7)dbj|BAD91200.1|5e-53sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter 692005365 (6)dbj|BAD91200.1|9e-61sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF036F23+                                                           CTGAAACCCGGC
                      ____________________________________________________________
consensus                                                             CTGAAACCCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H12+                           GGAAGAAGATAGATGAAGAAAAGATCTTCACTGAAAACTAAAAT
JMFS035A10+                                AAGATAGATGAAGAAAAGATCTTCACTGAAAACTAAAAT
JMFS042H10+                           GGAAGAAGATAGATGAAGAAAAGATCTTCACTGANAACTANAAT
JMSF036F23+           ATTAAAAATGATTGGTGGAAGAAGATAGATGAAGAAAAGATCTTCACTGAAAACTAAAAT
                      ____________________________________________________________
consensus             ATTAAAAATGATTGGTGGAAGAAGATAGATGAAGAAAAGATCTTCACTGAAAACTAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H12+           ATGCGAGCTTGTTCCTCCGGAGGTAAGTAGAATAACAACACCAGTACATATTCCAATCAT
JMFS035A10+           ATGCGAGCTTGTTCCTCCGGAGGTAAGTAGAATAACAACACCAGTACATATTCCAATCAT
JMFS042H10+           ATGCGAGCTTGTTCCTCCGGAGGTAAGTAGAATAACAACACCAGTACATATTCCAATCAT
JMFF011L05+                                                          ATATTCCAATCAT
JMSF036F23+           ATGCGAGCTTGTTCCTCCGGAGGTAAGTAGAATAACAACACCAGTACATATTCCAATCAT
                      ____________________________________________________________
consensus             ATGCGAGCTTGTTCCTCCGGAGGTAAGTAGAATAACAACACCAGTACATATTCCAATCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H12+           GAGAGCAGTAATGGATTCATTCATCCAACGGCTTTCTTCCAAGAGATGGCCAATAATGAT
JMFS035A10+           GAGAGCAGTAATGGATTCATTCATCCAACGGCTTTCTTCCAAGAGATGGCCAATAATGAT
JMFS042H10+           GAGAGCAGTAATGGATTCATTCATCCAACGGCTTTCTTCCAAGAGATGGCCAATAATGAT
JMFF011L05+           GAGAGCAGTAATGGATTCATTCATCCAACGGCTTTCTTCCAAGAGATGGCCAATAATGAT
JMFF015P23+                                                 CCAAGAGATGGCCAATAATGAT
JMSF036F23+           GAGAGCAGTAATGGATTCATTCATCCAACGGCTTTCTTCCAAGAGATGGCCAATAATGAT
                      ____________________________________________________________
consensus             GAGAGCAGTAATGGATTCATTCATCCAACGGCTTTCTTCCAAGAGATGGCCAATAATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H12+           ACACGCACAGATAAGAGCCACAAATATGTTTATGGACACCACTGAGCCATGATCGGAGGT
JMFS035A10+           ACACGCACAGATAAGAGCCACAAATATGTTTATGGACACCACTGAGCCATGATCGGAGGT
JMFS042H10+           ACACGCACAGATAAGAGCCACAAATATGTTTATGGACACCACTGAGCCATGATCGGAGGT
JMFF011L05+           ACACGCACAGATAAGAGCCACAAATATGTTTATGGACACCACTGAGCCATGATCGGAGGT
JMFF015P23+           ACACGCACAGATAAGAGCCACAAATATGTTTATGGACACCACTGAGCCATGATCGGAGGT
JMSF036F23+           ACACGCACAGATAAGAGCCACAAATATGTTTATGGACACCACTGAGCCATGATCGGAGGT
                      ____________________________________________________________
consensus             ACACGCACAGATAAGAGCCACAAATATGTTTATGGACACCACTGAGCCATGATCGGAGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H12+           CGTTAACATATTCATCTTCGACAACAGTGTCCCAACGTCAACTCCCATTTTCCCAACTCC
JMFS035A10+           CGTTAACATATTCATCTTCGACAACAGTGTCCCAACGTCAACTCCCATTTTCCCAACTCC
JMFS042H10+           CGTTAACATATTCATCTTCGACAACAGTGTCCCAACGTCAACTCCCATTTTCCCAACTCC
JMFF011L05+           CGTTAACATATTCATCTTCGACAACAGTGTCCCAACGTCAACTCCCATTTTCCCAACTCC
JMFF015P23+           CGTTAACATATTCATCTTCGACAACAGTGTCCCAACGTCAACTCCCATTTTCCCAACTCC
JMSF036F23+           CGTTAACATATTCATCTTCGACAACAGTGTCCCAACGTCAACTCCCATTTTCCCAACTCC
                      ____________________________________________________________
consensus             CGTTAACATATTCATCTTCGACAACAGTGTCCCAACGTCAACTCCCATTTTCCCAACTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H12+           TTTTACAAAATCTTCAGCAATTCACCACTAAACAAGCAAGTTTCTCCAGCACTTCAACTC
JMFS035A10+           TTTTACAAAATCTTCAGCAATTCACCACTAAACAAGCAAGTTTCTCCAGCACTTCAACTC
JMFS042H10+           TTTTACAAAATCTTCAGCAATTCACCACTAAACAAGCAAGTTTCTCCAGCACTTCAACTC
JMFF011L05+           TTTTACAAAATCTTCAGCAATTCACCACTAAACAAGCAAGTTTCTCCAGCACTTCAACTC
JMFF015P23+           TTTTACAAAATCTTCAGCAATTCACCACTAAACAAGCAAGTTTCTCCAGCACTTCAACTC
JMSF001D04+                                                        CCAGCACTTCAACTC
JMSF036F23+           TTTTACAAAATCTTCAGCAATTCACCACTAAACAAGCAAGTTTCTCCAGCACTTCAACTC
                      ____________________________________________________________
consensus             TTTTACAAAATCTTCAGCAATTCACCACTAAACAAGCAAGTTTCTCCAGCACTTCAACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H12+           GAAATTCTCGCAATTTCATACGGTATCCGCTCCGGAGCAAATCGGACTCAGAGCAGCGCT
JMFS035A10+           GAAATTCTCGCAATTTCATACGGTATCCGCTCCGGAGCAAATCGGACTCAGAGCAGCGCT
JMFS042H10+           GAAATTCTCGCAATTTCATACGGTATCCGCTCCGGAGCAAATCGGACTCAGAGCAGCGCT
JMFF011L05+           GAAATTCTCGCAATTTCATACGGTATCCGCTCCGGAGCAAATCGGACTCAGAGCAGCGCT
JMFF015P23+           GAAATTCTCGCAATTTCATACGGTATCCGCTCCGGAGCAAATCGGACTCAGAGCAGCGCT
JMSF001D04+           GAAATTCTCGCAATTTCATACGGTATCCGCTCCGGAGCAAATCGGACTCAGAGCAGCGCT
JMSF036F23+           GAAATTCTCGCAATTTCATACGGTATCCGCTCCGGAGCAAATCGGACTCAGAGCAGCGCT
                      ____________________________________________________________
consensus             GAAATTCTCGCAATTTCATACGGTATCCGCTCCGGAGCAAATCGGACTCAGAGCAGCGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H12+           GAAAGCCTGAAACAGAGCTAGAAAAACACCGCGAAGTTCAACCGGATCTCAAATTGGATG
JMFS035A10+           GAAAGCCTGAAACAGAGCTAGAAAAACACCGCGAAGTTCAACCGGATCTCAAATTGGATG
JMFS042H10+           GAAAGCCTGAAACAGAGCTAGAAAAACACCGCGAAGTTCAACCGGATCTCAAATTGGATG
JMFF011L05+           GAAAGCCTGAAACAGAGCTAGAAAAACACCGCGAAGTTCAACCGGATCTCAAATTGGATG
JMFF015P23+           GAAAGCCTGAAACAGAGCTAGAAAAACACCGCGAAGTTCAACCGGATCTCAAATTGGATG
JMSF001D04+           GAAAGCCTGAAACAGAGCTAGAAAAACACCGCGAAGTTCAACCGGATCTCAAATTGGATG
JMSF036F23+           GAAAGCCTGAAACAGAGCTAGAAAAACACCGCGAAGTTCAACCGGATCTCAAATTGGATG
                      ____________________________________________________________
consensus             GAAAGCCTGAAACAGAGCTAGAAAAACACCGCGAAGTTCAACCGGATCTCAAATTGGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H12+           AAATCCTCAACAATCTGTTGAAAACTCCAGCCACGGAGAAGCCAAATCCTGAAACTCCAA
JMFS035A10+           AAATCCTCAACAATCTGTTGAAAACTCCAGCCACGGAGAAGCCAAATCCTGAAACTCCAA
JMFS042H10+           AAATCCTCAACAATCTGTTGAAAACTCCAGCCACGGAGAAGCCAAATCCTGAAACTCCAA
JMFF011L05+           AAATCCTCAACAATCTGTTGAAAACTCCAGCCACGGAGAAGCCAAATCCTGAAACTCCAA
JMFF015P23+           AAATCCTCAACAATCTGTTGAAAACTCCAGCCACGGAGAAGCCAAATCCTG-AACTCCAA
JMSF001D04+           AAATCCTCAACAATCTGTTGAAAACTCCAGCCACGGAGAAGCCAAATCCTGAAACTCCAA
JMSF036F23+           AAATCCTCAACAATCTGTTGAAAACTCCAGCCACGGAGAAGCCAAATCCTGAAACTCCAA
                      ____________________________________________________________
consensus             AAATCCTCAACAATCTGTTGAAAACTCCAGCCACGGAGAAGCCAAATCCTGAAACTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H12+           AAAACTTTGCTTCTTCTACAGTCACGAGCTTTTAGCCTCTTAAAAGCGAATTTCGCCAAA
JMFS035A10+           AAAACTTTGCTTCTTCTACAGTCAAGAGCTTTTAGCCTCTTAAAAGCGAATTTCGCCAAA
JMFS042H10+           AAAACTTTGCTTCTTCTACAGTCACGAGCTTTTAGCCTCTTAAAAGCGAATTTCGCCAAA
JMFF011L05+           AAAACTTTGCTTCTTCTACAGTCACGAGCTTTTAGCCTCTTAAAAGCGAATTTCGCCAAA
JMFF015P23+           AAAACTTTGCTTCTTCTACAGTCACGAGCTTTTAGCCTCTTAAAAGCGAATTTCGCCAAA
JMSF001D04+           AAAACTTTGCTTCTTCTACAGTCACGAGCTTTTAGCCTCTTAAAAGCGAATTTCGCCAAA
JMSF036F23+           AAAACTTTGCTTCTTCTACAGTCACGAGCTTTTAGCCTCTTAAAAGCGAATTTCGCCAAA
                      ____________________________________________________________
consensus             AAAACTTTGCTTCTTCTACAGTCACGAGCTTTTAGCCTCTTAAAAGCGAATTTCGCCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H12+           TCACTTTCGAAGGAACCGATTCCTCTAGAGAGAGAGAGAGGAAGAATTGAGTAATAAGC 
JMFS035A10+           TCACTTTCGAAGGAACCGATTCCTCTAGAGA                             
JMFS042H10+           TCACTTTCGAAGGAACCGATTC                                      
JMFF011L05+           TCACTTTCGAAGGAACCGATTCCTCTAGAGAGAGAGAGAGGAAGAATTGAATAAT     
JMFF015P23+           TCACTTTCGAAGGAACCGATTCCTCTAGAGAGAGAGAGAGGAAGAATTGAGTAACAAGC 
JMSF001D04+           TCACTTTCGAAGGAACCGATTCCTCTAGAGAGAGAGAGAGGAAGAATTGAGTAATAAGC 
JMSF036F23+           TCACTTTCGAAGGAACCGATTCCTCTAGAGAGAGAGAGAGGAAGAATTGAGTAATAAGCC
                      ____________________________________________________________
consensus             TCACTTTCGAAGGAACCGATTCCTCTAGAGAGAGAGAGAGGAAGAATTGAGTAATAAGCC