| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF012H14 | Sequence | 425 | 000862 (3) | ref|XP_008376669.1| | 1e-13 | PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 | 728 | 011375 (6) | ref|XP_008226203.1| | 1e-37 | PREDICTED: receptor-like protein 12 [Prunus mume] |
| JMSF034J24 | Sequence | 670 | 000862 (3) | gb|EEE54949.1| | 1e-23 | hypothetical protein OsJ_02519 [Oryza sativa Japonica Group] | 676 | 011375 (6) | emb|CAN63562.1| | 1e-26 | hypothetical protein VITISV_037178 [Vitis vinifera] |
| JMSF035J24 | Sequence | 668 | 000862 (3) | gb|EEE54949.1| | 1e-23 | hypothetical protein OsJ_02519 [Oryza sativa Japonica Group] | 536 | 011375 (6) | ref|XP_010672172.1| | 8e-13 | PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 |
This contig is upended
. : . : . : . : . : . :
JMSF034J24+ ACCTACCAAA
____________________________________________________________
consensus ACCTACCAAA
. : . : . : . : . : . :
JMSF034J24+ GAATTTCTAGAGAGATCAAGATATTCAAGGAAGTAGCTTTGGTTTAGCCACAAATTTAGT
JMSF035J24+ AGT
____________________________________________________________
consensus GAATTTCTAGAGAGATCAAGATATTCAAGGAAGTAGCTTTGGTTTAGCCACAAATTTAGT
. : . : . : . : . : . :
JMSF034J24+ GATGATGGGAGACTTGGAAGGTAGCAGGAAGATAGGCTTAGTGTTGTGAGCAAAGAAAGC
JMSF012H14+ TTGGAAGGTAGCAGGAATATAGGCTTAGTGTTGTGAGCAAAGAAAGG
JMSF035J24+ GATGATGGGAGACTTGGAAGGTAGCAGGAAGATAGGCTTAGTGTTGTGAGCAAAGAAAGC
____________________________________________________________
consensus GATGATGGGAGACTTGGAAGGTAGCAGGAAGATAGGCTTAGTGTTGTGAGCAAAGAAAGC
. : . : . : . : . : . :
JMSF034J24+ TTTGAAATTGAGTGAAGCCAATCTGAAACAGAATGAAGGTCTACCCCATCCATATTGAGA
JMSF012H14+ TTTGAAATTGAGTGAAGCCAATCTGAAACAGAATGAAGGTCTACCCCATCCATTTTGAGA
JMSF035J24+ TTTGAAATTGAGTGAAGCCAATCTGAAACAGAATGAAGGTCTACCCCATCCATATTGAGA
____________________________________________________________
consensus TTTGAAATTGAGTGAAGCCAATCTGAAACAGAATGAAGGTCTACCCCATCCATATTGAGA
. : . : . : . : . : . :
JMSF034J24+ TACTCCAAGGAAGAAAGATAAGAAATCCATTCCAAGGTGTCAACTACTTTTAAATCTTGA
JMSF012H14+ TACTCCAAAGAAGAAAGATGAGAAATCCATTCCAAGGTGTCGACTACTTTTAGTTCATGA
JMSF035J24+ TACTCCAAGGAAGAAAGATAAGAAATCCATTCCAAGGTGTCAACTACTTTTAAATCTTGA
____________________________________________________________
consensus TACTCCAAGGAAGAAAGATAAGAAATCCATTCCAAGGTGTCAACTACTTTTAAATCTTGA
. : . : . : . : . : . :
JMSF034J24+ CCATCAATGAAGTTGTTGCCAATGTCAAGATATTTCAAAGAGGAAATATTTCCCAGATGA
JMSF012H14+ AAAT------TGTAGTTGCCAAGGTCAAGATATTTCAAAGTGGAAATATTTCCCAGATGA
JMSF035J24+ CCATCAATGAAGTTGTTGCCAATGTCAAGATATTTCAAAGAGGAAATATTTCCCAGATGA
____________________________________________________________
consensus CCATCAATGAAGTTGTTGCCAATGTCAAGATATTTCAAAGAGGAAATATTTCCCAGATGA
. : . : . : . : . : . :
JMSF034J24+ GGAGGAACATTTCCAAATAAATTATTATAAGAAAGATCAAGATAGACCAAGTTGTTGAGA
JMSF012H14+ GCAGGAACATTTCCAAACAGATAATTATAAGAAAGATTAAGATAGACCAAGTTGTTGAGA
JMSF035J24+ GGAGGAACATTTCCAAATAAATTATTATAAGAAAGATCAAGATAGACCAAGTTGTTGAGA
____________________________________________________________
consensus GGAGGAACATTTCCAAATAAATTATTATAAGAAAGATCAAGATAGACCAAGTTGTTGAGA
. : . : . : . : . : . :
JMSF034J24+ GAGCCAATGAAACTCGGAATTCTTTCAAAATCATTGAAACTAAGATCCAAGAAATTGAGA
JMSF012H14+ GAGCCAATGAAATTCGGAATTGTTTCAAATTCATTGAAACTAAGATCCAAGAAAGTGAGA
JMSF035J24+ GAGCCAATGAAACTCGGAATTCTTTCAAAATCATTGAAACTAAGATCCAAGAAATTGAGA
____________________________________________________________
consensus GAGCCAATGAAACTCGGAATTCTTTCAAAATCATTGAAACTAAGATCCAAGAAATTGAGA
. : . : . : . : . : . :
JMSF034J24+ AAGGGTAAATGAAGCAAGGAAGGGCTGATTTCACCTTGTAGTAGGCCTGGGTAGCATGGT
JMSF012H14+ AACGGTNAATGANGCAAGGAAGGGNTGATTTCA
JMSF035J24+ AAGGGTAAATGAAGCAAGGAAGGGNTGATTTCACCTTGTAGTAGGCCTGGGTAGCATGGT
____________________________________________________________
consensus AAGGGTAAATGAAGCAAGGAAGGGCTGATTTCACCTTGTAGTAGGCCTGGGTAGCATGGT
. : . : . : . : . : . :
JMSF034J24+ GGTCCATCAGTGCACAAGCCTTCAAGCCCCAAATGAAGAGCAACAACATGGCCAGTAGTT
JMSF035J24+ GGTCCATCAGTGCACAAGCCTTCAAGCCCCAAATGAAGAGCAACAACATGGCCAGTAGTT
____________________________________________________________
consensus GGTCCATCAGTGCACAAGCCTTCAAGCCCCAAATGAAGAGCAACAACATGGCCAGTAGTT
. : . : . : . : . : . :
JMSF034J24+ ATGTTATCACAACCAACTCCTTTCCATTTGCAGCAGTCATCATCATCTCCCCATGAGGAA
JMSF035J24+ ATGTTATCACAACCAACTCCTTTCCATTTGCAGCAGTCATCATCATCTCCCCATGAGGAA
____________________________________________________________
consensus ATGTTATCACAACCAACTCCTTTCCATTTGCAGCAGTCATCATCATCTCCCCATGAGGAA
. : . : . : . : . : . :
JMSF034J24+ AGAGAGCTCAATGGGTCAGAAATAATGCTATGTTTGAAGCTTAGAAGAGCTTTTCTCTC
JMSF035J24+ AGAGAGCTCAATGGGTCAGAAATAATGCTATGTTTGAAGCTTAGAAGAGCTTTTCTCTCC
____________________________________________________________
consensus AGAGAGCTCAATGGGTCAGAAATAATGCTATGTTTGAAGCTTAGAAGAGCTTTTCTCTCC