Contig 000860:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF035I08Sequence593000860 (2)ref|XP_010931656.1|5e-28PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Elaeis guin540000860 (2)ref|XP_010931656.1|3e-28PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Elaeis guin

Alignment

This contig is upended


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JMSF035I08- GTCGGACGGCATTGTTGCTCTTGCTGCGATCACACTTTCTTCGGCGAAGAGTT
                      ____________________________________________________________
consensus GTCGGACGGCATTGTTGCTCTTGCTGCGATCACACTTTCTTCGGCGAAGAGTT
 
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rJMSF035I08+ ATGGCGTCGGGATGGGGAATTACTGGGAACAAAGGCCGCTGCTACGA
JMSF035I08- TCAGAAGAAGAGAATGGCGTCGGGATGGGGAATTACTGGGAACAAAGGCCGCTGCTACGA
                      ____________________________________________________________
consensus TCAGAAGAAGAGAATGGCGTCGGGATGGGGAATTACTGGGAACAAAGGCCGCTGCTACGA
 
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rJMSF035I08+ TTTCTGGATGGATTTCAGTGAATGTATGTCCGGTTGCCGGGAGCCCAAGGACAGCGCTCT
JMSF035I08- TTTCTGGATGGATTTCAGTGAATGTATGTCCGGTTGCCGGGAGCCCAAGGACAGCGCTCT
                      ____________________________________________________________
consensus TTTCTGGATGGATTTCAGTGAATGTATGTCCGGTTGCCGGGAGCCCAAGGACAGCGCTCT
 
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rJMSF035I08+ TCTCCGAGAAGACTATCTCGAGTGTCTCCACCACTCCAAAGAGGATGTTCATATCAAGCT
JMSF035I08- TCTCCGAGAAGACTATCTCGAGTGTCTCCACCACTCCAAAGAGGATGTTCATATCAAGCT
                      ____________________________________________________________
consensus TCTCCGAGAAGACTATCTCGAGTGTCTCCACCACTCCAAAGAGGATGTTCATATCAAGCT
 
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rJMSF035I08+ GGTCCCAAATCAGTCCAGTATCAACGTAGGAATCGGATATACAAGGAAGAGCAGCGTCAA
JMSF035I08- GGTCCCAAATCAGTCCAGTATCAACGTAGGAATCGGATATACAAGGAAGAGCAGCGTCAA
                      ____________________________________________________________
consensus GGTCCCAAATCAGTCCAGTATCAACGTAGGAATCGGATATACAAGGAAGAGCAGCGTCAA
 
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rJMSF035I08+ CTAAGAGCAGCTGGGCAGAAGGACAAGGCAGGTGAAAATGGTGGTGGAACTCATCATTGA
JMSF035I08- CTAAGAGCAGCTGGGCAGAAGGACAAGGCAGGTGAAAATGGTGGTGGAACTCATCATTGA
                      ____________________________________________________________
consensus CTAAGAGCAGCTGGGCAGAAGGACAAGGCAGGTGAAAATGGTGGTGGAACTCATCATTGA
 
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rJMSF035I08+ TTGACATTTTTCCTTTATTGTTATGGTTTTAACCATTTGAAGCAGGTTGAATTGGATGCT
JMSF035I08- TTGACATTTTTCCTTTATTGTTATGGTTTTAACCATTTGAAGCAGGTTGAATTGGATGCT
                      ____________________________________________________________
consensus TTGACATTTTTCCTTTATTGTTATGGTTTTAACCATTTGAAGCAGGTTGAATTGGATGCT
 
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rJMSF035I08+ TCTGAATCCTCTGAGAATAAAGAATTAAATGAATTGTACTTTTTGTGACATGGAATGTTG
JMSF035I08- TCTGAATCCTCTGAGAATAAAGAATTAAATGAATTGTACTTTTTGTGACATGGAATGTTG
                      ____________________________________________________________
consensus TCTGAATCCTCTGAGAATAAAGAATTAAATGAATTGTACTTTTTGTGACATGGAATGTTG
 
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rJMSF035I08+ ACAGCATCTGTTATTGGTTGCTTGCCAAGTTAGACTCCTAAATGCCAAGTAATCACC
JMSF035I08- ACAGCATCTGTTATTGGTTGCTTGCCAAGTTAGACTCCTAAATGCCAAGTAATCACCATA
                      ____________________________________________________________
consensus ACAGCATCTGTTATTGGTTGCTTGCCAAGTTAGACTCCTAAATGCCAAGTAATCACCATA
 
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JMSF035I08- ATCTATCATTCGGTGTACGTTTATAATACACGAATACAAGTGTTTACACTAAAAAAAAAA
                      ____________________________________________________________
consensus ATCTATCATTCGGTGTACGTTTATAATACACGAATACAAGTGTTTACACTAAAAAAAAAA