Contig 000830:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032M08Sequence556000830 (5)emb|CDP07933.1|9e-40unnamed protein product [Coffea canephora]712010445 (4)ref|XP_004236893.1|4e-11PREDICTED: zinc finger CCCH domain-containing protein 17-like [Solanum lycopers
JMFS034A12Sequence611000830 (5)ref|XP_009623001.1|1e-42PREDICTED: zinc finger CCCH domain-containing protein 17-like [Nicotiana toment
JMFS061C10Sequence627000830 (5)emb|CDP07933.1|2e-41unnamed protein product [Coffea canephora]
JMFS062C09Sequence615000830 (5)ref|XP_009623001.1|2e-43PREDICTED: zinc finger CCCH domain-containing protein 17-like [Nicotiana toment
JMSF031O20Sequence660000830 (5)ref|XP_009623001.1|2e-45PREDICTED: zinc finger CCCH domain-containing protein 17-like [Nicotiana toment689010445 (4)ref|XP_009759890.1|3e-12PREDICTED: zinc finger CCCH domain-containing protein 17-like [Nicotiana sylves

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061C10+                     CAAGGTACTCCCTGCTTATTAGCAAAATAGGGAACCTGAGCCGCAGGGAC
JMFS034A12+                     CAAGGTACTCCCTGCTTATTAGCAAAATAGGGAACCTGAGCCGCAGGGAC
JMFS062C09+                     CAAGGTACTCCCTGCTTATTAGCAAAATAGGGAACCTGAGCCGCAGGGAC
JMSF031O20+           GAAGAAGATGCAAGGTACTCCCTGCTTATTAGCAAAATAAGGAACCTGAGCCGCAGGGAC
                      ____________________________________________________________
consensus             GAAGAAGATGCAAGGTACTCCCTGCTTATTAGCAAAATAGGGAACCTGAGCCGCAGGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061C10+           CGGAGCCTGCACAGGAGGCATGAATGGCTCCACTGGATTTGGGGCTTGGTTGCCTAGTAA
JMFS034A12+           CGGAGCCTGCACAGGAGGCATGAATGGCTCCACTGGATTTGGGGCTTGGTTGCCTAGTAA
JMFS062C09+           CGGAGCCTGCACAGGAGGCATGAATGGCTCCACTGGATTTGGGGCTTGGTTGCCTAGTAA
JMFF032M08+                                           CTGGATTTGGGGCTTGGTTGCCTAGTAA
JMSF031O20+           CGGAGCCTGCACAGGAGGCATGAATGGCTCCACTGGATTTGGGGCTTGGTTGCCTAGTAA
                      ____________________________________________________________
consensus             CGGAGCCTGCACAGGAGGCATGAATGGCTCCACTGGATTTGGGGCTTGGTTGCCTAGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061C10+           TCCATCGAGAGGAGGGTGCCTGAATGCACACTTCGGATTTAAGCAATTCCCATTCAACCA
JMFS034A12+           TCCATCGAGAGGAGGGTGCCTGAATGCACACTTCGGATTTAAGCAATTCCCATTCAACCA
JMFS062C09+           TCCATCGAGAGGAGGGTGCCTGAATGCACACTTCGGATTTAAGCAATTCCCATTCAACCA
JMFF032M08+           TCCATCGAGAGGAGGGTGCCTGAATGCACACTTCGGATTTAAGCAATTCCCATTCAACCA
JMSF031O20+           TCCATCGAGAGGAGGGTGCCTGAATGCACACTTCGGATTTAAGCAATTCCCATTCAACCA
                      ____________________________________________________________
consensus             TCCATCGAGAGGAGGGTGCCTGAATGCACACTTCGGATTTAAGCAATTCCCATTCAACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061C10+           ATACCAGCAATCTCTCGGGTTAAGCCGAGCATTATCACTATGGCGATACTCGCATTCACT
JMFS034A12+           ATACCAGCAATCTCTCGGGTTAAGCCGAGCATTATCACTATGGCGATACTCGCATTCACT
JMFS062C09+           ATACCAGCAATCTCTCGGGTTAAGCCGAGCATTATCACTATGGCGATACTCGCATTCACT
JMFF032M08+           ATACCAGCAATCTCTCGGGTTAAGCCGAGCATTATCACTATGGCGATACTCGCATTCACT
JMSF031O20+           ATACCAGCAATCTCTCGGGTTAAGCCGAGCATTATCACTATGGCGATACTCGCATTCACT
                      ____________________________________________________________
consensus             ATACCAGCAATCTCTCGGGTTAAGCCGAGCATTATCACTATGGCGATACTCGCATTCACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061C10+           TCCCTTCTTGCAGGTTAGAGGAGATGCGAGGAAGTAAACGCAATCTGTGTTTTTCTTGAT
JMFS034A12+           TCCCTTCTTGCAGGTTAGAGGAGATGCGAGGAAGTAAACGCAATCTGTGTTTTTCTTGAT
JMFS062C09+           TCCCTTCTTGCAGGTTAGAGGAGATGCGAGGAAGTAAACGCAATCTGTGTTTTTCTTGAT
JMFF032M08+           TCCCTTCTTGCAGGTTAGAGGAGATGCGAGGAAGTAAACGCAATCTGTGTTTTTCTTGAT
JMSF031O20+           TCCCTTCTTGCAGGTTAGAGGAGATGCGAGGAAGTAAACGCAATCTGTGTTTTTCTTGAT
                      ____________________________________________________________
consensus             TCCCTTCTTGCAGGTTAGAGGAGATGCGAGGAAGTAAACGCAATCTGTGTTTTTCTTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061C10+           AGCTTCTTCCTCAGCTGACGTCATCGGCGGCGCCGCGGCTGCGGCTGCTGCTGCTGCTCC
JMFS034A12+           AGCTTCTTCCTCAGCTGACGTCATCGGCGGCGCCGCGGCTGCGGCTGCTGCTGCTGCTCC
JMFS062C09+           AGCTTCTTCCTCAGCTGACGTCATCGGCGGCGCCGCGGCTGCGGCTGCTGCTGCTGCTCC
JMFF032M08+           AGCTTCTTCCTCAGCTGACGTCATCGGCGGCGCCGCGGCTGCGGCTGCTGCTGCTGCTCC
JMSF031O20+           AGCTTCTTCCTCAGCTGACGTCATCGGCGGCGCCGCGGCTGCGGCTGCTGCTGCTGCTCC
                      ____________________________________________________________
consensus             AGCTTCTTCCTCAGCTGACGTCATCGGCGGCGCCGCGGCTGCGGCTGCTGCTGCTGCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061C10+           AGCTGGCGGAGGCGGTGCTTGCGGATTCGGCCGGTGAGAACCATCCATGGCGTTGGGTTT
JMFS034A12+           AGCTGGCGGAGGCGGTGCTTGCGGATTCGGCCGGTGAGAACCATCCATGGCGTTGGGTTT
JMFS062C09+           AGCTGGCGGAGGCGGTGCTTGCGGATTCGGCCGGTGAGAACCATCCATGGCGTTGGGTTT
JMFF032M08+           AGCTGGCGGAGGCGGTGCTTGCGGATTCGGCCGGTGAGAACCATCCATGGCGTTGGGTTT
JMSF031O20+           AGCTGGCGGAGGCGGTGCTTGCGGATTCGGCCGGTGAGAACCATCCATGGCGTTGGGTTT
                      ____________________________________________________________
consensus             AGCTGGCGGAGGCGGTGCTTGCGGATTCGGCCGGTGAGAACCATCCATGGCGTTGGGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061C10+           CTGAGGAAAACCCTAGGAGATCTTTGACAGACTGCGGCCGGATCTAGGGTTCCAGAAGTC
JMFS034A12+           CTGAGGAAAACCCTAGGAGATCTTTGACAGACTGCGGCCGGATCTAGGGTTCCAGAAGTC
JMFS062C09+           CTGAGGAAAACCCTAGGAGATCTTTGACAGACTGCGGCCGGATCTAGGGTTCCAGAAGTC
JMFF032M08+           CTGAGGAAAACCCTAGGAGATCTTTGACAGACTGCGGCCGGATCTAGGGTTCCAGAAGTC
JMSF031O20+           CTGAGGAAAACCCTAGGAGATCTTTGACAGACTGCGGCCGGATCTAGGGTTCCAGAAGTC
                      ____________________________________________________________
consensus             CTGAGGAAAACCCTAGGAGATCTTTGACAGACTGCGGCCGGATCTAGGGTTCCAGAAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061C10+           CGCCTGATATATGTGTATACAAATGCGCGTCAGTGACACATCTGAATCAGTATAGCTGAT
JMFS034A12+           CGCCTGATATATGTGTATACAAATGCGCGTCAGTGACACATCTGAATCAGTATAGCTGAT
JMFS062C09+           CGCCTGATATATGTGTATACAAATGCGCGTCAGTGACACATCTGAATCAGTATAGCTGAT
JMFF032M08+           CGCCTGATATATGTGTATACAAATGCGCGTCAGTGACACATCTGAATCAGTATAGCTGAT
JMSF031O20+           CGCCTGATATATGTGTATACAAATGCGCGTCAGTGACACATCTGAATCAGTATAGCTGAT
                      ____________________________________________________________
consensus             CGCCTGATATATGTGTATACAAATGCGCGTCAGTGACACATCTGAATCAGTATAGCTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061C10+           CCGGCTTGCAATTCGAACCCCGAGGGTTTGATTGCCGGAAAAAGTCGCCGAGAATTAGAT
JMFS034A12+           CCGGCTTGCAATTCGAACCCCGAGGGTTTGATTGCCGGAAAAAGTCGCCGAGAATTAGAT
JMFS062C09+           CCGGCTTGCAATTCGAACCCCGAGGGTTTGATTGCCGGAAAAAGTCGCCGAGAATTAGAT
JMFF032M08+           CCGGCTTGCAATTCGAACCCCGAGGGTTTGATTGCCGGAAAAAGTCGCCGAGAATTAGAT
JMSF031O20+           CCGGCTTGCAATTCGAACCCCGAGGGTTTGATTGCCGGAAAAAGTCGCCGAGAATTAGAT
                      ____________________________________________________________
consensus             CCGGCTTGCAATTCGAACCCCGAGGGTTTGATTGCCGGAAAAAGTCGCCGAGAATTAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS061C10+           GGTTTTATAGAGAGAGAAACAGAGAGAGAGAGAGAAA                       
JMFS034A12+           GGTTTTATAGAGAGAGAAA                                         
JMFS062C09+           GGTTTTATAGAGAGAGAAA                                         
JMFF032M08+           GGTTTTATAGAGAGAGAAACAGAGAGAGAGAGAGAAATGAGACTCTGG            
JMSF031O20+           GGTTTTATAGAGAGAGAAACAGAGAGAGAGAGAGAAATGAGGCTCTGGAAAGAGGAGTCC
                      ____________________________________________________________
consensus             GGTTTTATAGAGAGAGAAACAGAGAGAGAGAGAGAAATGAGGCTCTGGAAAGAGGAGTCC