Contig 000820:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018H18Sequence480000820 (3)ref|XP_008229180.1|4e-44PREDICTED: protein YIF1B-like [Prunus mume] ref|XP_008229181.1| PREDICTED: prote769000820 (3)ref|XP_004242386.2|3e-116PREDICTED: protein YIF1B isoform X1 [Solanum lycopersicum]
JMSF030P08Sequence645000820 (3)ref|XP_004242386.2|8e-75PREDICTED: protein YIF1B isoform X1 [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF018H18- GTCTGATCTTGGTCATTTCC
                      ____________________________________________________________
consensus GTCTGATCTTGGTCATTTCC
 
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rJMSF018H18- TTTTCTCCCTCAATTTGTACACCACGTTTATGGTACATTTTTGTTGGACAAAAGATACAT
                      ____________________________________________________________
consensus TTTTCTCCCTCAATTTGTACACCACGTTTATGGTACATTTTTGTTGGACAAAAGATACAT
 
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rJMSF018H18- TAGATGAGAACTCTGTCAAATATTCAGAAAAGTACCACAAAGATATTACAGAAAAATAAA
                      ____________________________________________________________
consensus TAGATGAGAACTCTGTCAAATATTCAGAAAAGTACCACAAAGATATTACAGAAAAATAAA
 
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rJMSF018H18- AAAATTGTTCAACAAAATTGACAGTAAGTTCTATAGCTATGGAGGTAAGGGGGCGGTACT
                      ____________________________________________________________
consensus AAAATTGTTCAACAAAATTGACAGTAAGTTCTATAGCTATGGAGGTAAGGGGGCGGTACT
 
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rJMSF018H18- TCAAAAGAACCAACTAATGCTAATCTTTCCAAGCCAGAAGAGAAGGGGGAACTGAGAGAG
                      ____________________________________________________________
consensus TCAAAAGAACCAACTAATGCTAATCTTTCCAAGCCAGAAGAGAAGGGGGAACTGAGAGAG
 
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rJMSF018H18- GGCGACAAAGAGGAGGATATAATGATGCCTGCTTGAATCGTAAGTCCTCACCTCTGCAAA
                      ____________________________________________________________
consensus GGCGACAAAGAGGAGGATATAATGATGCCTGCTTGAATCGTAAGTCCTCACCTCTGCAAA
 
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rJMSF018H18- GAGTGCCCTCTTCATTGTTTTCACAAGGAATATCCCCATGCATAGACCAGCCCATGGCAT
                      ____________________________________________________________
consensus GAGTGCCCTCTTCATTGTTTTCACAAGGAATATCCCCATGCATAGACCAGCCCATGGCAT
 
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rJMSF018H18- CAAAAAGTAGTAGGAATAGTTCCATAAAATCTTCCCCAAGATAGCCACCGACAAACCCGC
                      ____________________________________________________________
consensus CAAAAAGTAGTAGGAATAGTTCCATAAAATCTTCCCCAAGATAGCCACCGACAAACCCGC
 
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rJMSF018H18- AAAAGTGTATCCTGCATATGCCACAATGTCCAGCAAAGGTGCTTCTCCACTACCAAGTGA
                      ____________________________________________________________
consensus AAAAGTGTATCCTGCATATGCCACAATGTCCAGCAAAGGTGCTTCTCCACTACCAAGTGA
 
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rJMSF018H18- GAAAAGTGTCATCTTCAGCAATGAAACTTGTAAAAACCAGCCAACCAAACCCTTCATGAA
                      ____________________________________________________________
consensus GAAAAGTGTCATCTTCAGCAATGAAACTTGTAAAAACCAGCCAACCAAACCCTTCATGAA
 
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rJMSF018H18- CAGCCAGTTTAGGGCTTCAGGGCTAAACCTTCCCTGGAGA-CCCAATGATAAACCAGCGA
JMSF030P08+ TTCAGGGCTAAACCTTCCCTGGAGACCCCAATGATAAACCAGCAA
                      ____________________________________________________________
consensus CAGCCAGTTTAGGGCTTCAGGGCTAAACCTTCCCTGGAGACCCCAATGATAAACCAGCGA
 
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rJMSF018H18- GAACTACATACGTGCCAAATGCCATAAATGGGATATACNAATCTGGGGCATTTATGTCAT
JMSF030P08+ GAACAACATACGTGCCAAATGCCATAAATGGGATATACAAATCTGGAGCATTTATGTCAT
                      ____________________________________________________________
consensus GAACTACATACGTGCCAAATGCCATAAATGGGATATACAAATCTGGGGCATTTATGTCAT
 
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rJMSF018H18- AGATTGGGGGCTTATAGGAAAGCCTACCACCTACTGGTTCAGTAATCCTTGTCCAATGAC
JMSF018H18+ ACTGGTTCAGTAATCCTTGTCCAATGAC
JMSF030P08+ AGATTGGGGGCTTATAGGAAAGCCTACCACCTACTGGCTCAGTGATCCTTGTCCAATGAC
                      ____________________________________________________________
consensus AGATTGGGGGCTTATAGGAAAGCCTACCACCTACTGGTTCAGTAATCCTTGTCCAATGAC
 
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rJMSF018H18- CCCTATGCAGGAACGGGAAA
JMSF018H18+ CCCTATGCAGGAACGGGAAAAGTACAACTTTCAATTTGTTCCTCACATATTGGTCATTGA
JMSF030P08+ CCCTATGTAGGAATGGGAAAAGTACAACTTTCAATTTGTTCCTCACATATTGGTCATTGA
                      ____________________________________________________________
consensus CCCTATGCAGGAACGGGAAAAGTACAACTTTCAATTTGTTCCTCACATATTGGTCATTGA
 
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JMSF018H18+ CTTGGAAGTAGTATTGGGGATCAGAAAAGTATCTACTAATATTGCTTTGTACGTATTCAG
JMSF030P08+ CTTGGAAGTAGTATTGGGGATCAGAAAAGTATCTACTAATATTGCTTTGTACGTATTCAG
                      ____________________________________________________________
consensus CTTGGAAGTAGTATTGGGGATCAGAAAAGTATCTACTAATATTGCTTTGTACGTATTCAG
 
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JMSF018H18+ AGCTTGAACCAAGAATTTTCTCTCCATAGGCACCTAATCCACCTCTTATTAAACCAGACC
JMSF030P08+ AGCTTGAACCAAGAATTTTCTCTCCATAGGCACCTAATCCACCTCTTATTAAACCAGACC
                      ____________________________________________________________
consensus AGCTTGAACCAAGAATTTTCTCTCCATAGGCACCTAATCCACCTCTTATTAAACCAGACC
 
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JMSF018H18+ CTGCACCATAGAATGCATTTCCAAATGGATTTGGCTGCTGCATAGTAGGCGGTATAGGAA
JMSF030P08+ CTGCACCATAGAATGCATTTCCAAATGGATTTGGCTGCTGCATAGTAGGCGGTCTAGGAA
                      ____________________________________________________________
consensus CTGCACCATAGAATGCATTTCCAAATGGATTTGGCTGCTGCATAGTAGGCGGTCTAGGAA
 
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JMSF018H18+ CACCAGCCTGTGCTCCAAGATTATCATACATATCT
JMSF030P08+ CTCCAGACTGTGCTCCAAGATTATCATACATATCTCCACAGATCTAAAACGGGCACGCTT
                      ____________________________________________________________
consensus CTCCAGCCTGTGCTCCAAGATTATCATACATATCTCCACAGATCTAAAACGGGCACGCTT
 
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JMSF030P08+ TTCGCTGAAATGAAAAAAATTTCCTTTATGTCTTGATATCTCAATAAGTCAATGAAGAGC
                      ____________________________________________________________
consensus TTCGCTGAAATGAAAAAAATTTCCTTTATGTCTTGATATCTCAATAAGTCAATGAAGAGC
 
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JMSF030P08+ TGAAAAGAAGAAGACAAGGAAGCTAGGGATCGGAATCCGCAGAGCGAGGAGAATTTGGAA
                      ____________________________________________________________
consensus TGAAAAGAAGAAGACAAGGAAGCTAGGGATCGGAATCCGCAGAGCGAGGAGAATTTGGAA
 
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JMSF030P08+ ACCGTGTATGGGTCGATGGCTTCAGTCGATCTGAACCCGATTGTTCCGTGGATCACATTC
                      ____________________________________________________________
consensus ACCGTGTATGGGTCGATGGCTTCAGTCGATCTGAACCCGATTGTTCCGTGGATCACATTC