| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010D14 | Sequence | 549 | 000801 (4) | ref|XP_009768322.1| | 7e-67 | PREDICTED: CTP synthase-like isoform X2 [Nicotiana sylvestris] | 686 | 001053 (3) | ref|XP_009768378.1| | 6e-28 | PREDICTED: CTP synthase 1-like isoform X3 [Nicotiana sylvestris] |
| JMFF032I19 | Sequence | 478 | 000801 (4) | gb|AFW81197.1| | 2e-51 | hypothetical protein ZEAMMB73_715811 [Zea mays] | 654 | 001053 (3) | ref|XP_009590347.1| | 1e-21 | PREDICTED: CTP synthase 1-like isoform X2 [Nicotiana tomentosiformis] |
| JMFS147C10 | Sequence | 627 | 000801 (4) | ref|XP_010038270.1| | 4e-35 | PREDICTED: CTP synthase isoform X3 [Eucalyptus grandis] | |||||
| JMSF029A20 | Sequence | 667 | 000801 (4) | gb|AFW83443.1| | 8e-40 | hypothetical protein ZEAMMB73_211552, partial [Zea mays] | 689 | 001053 (3) | ref|XP_010319553.1| | 3e-33 | PREDICTED: CTP synthase 1-like isoform X2 [Solanum lycopersicum] ref|XP_01031955 |
This contig is upended
. : . : . : . : . : . :
JMFF010D14+ CTTT
____________________________________________________________
consensus CTTT
. : . : . : . : . : . :
JMFF010D14+ TCCATCAACAGGAATGACTGCTACGCGTTCAATCCATTCTTGAATGGCATCTGTTATGTG
____________________________________________________________
consensus TCCATCAACAGGAATGACTGCTACGCGTTCAATCCATTCTTGAATGGCATCTGTTATGTG
. : . : . : . : . : . :
JMFF010D14+ AGGGACAACCTGAACAGTGGTTCCCAAATAATCTCCTCTTCTCTCCTTATCAATAACAGC
JMFF032I19+ AACCTGAACAGTGGTTCCCAAATAATCTCCTCTTCTCTCCTTATCAATAACAGC
____________________________________________________________
consensus AGGGACAACCTGAACAGTGGTTCCCAAATAATCTCCTCTTCTCTCCTTATCAATAACAGC
. : . : . : . : . : . :
JMFF010D14+ CTGGTAAATTTTTCCAGTAGTTATGTTGTTGTCACGTGTTAGCTTAATATCTAGGAAACG
JMFF032I19+ CTGGTAAATTTTTCCAGTAGTTATGTTGTTGTCACGTGTTAGCTTAATATCTAGGAAACG
JMFS147C10+ TAGTTATGTTGTTGTCACGTGTTAGCTTAATATCTAGGAAACG
JMSF029A20+ TGGTAAATTTTTCCAGTAGTTATGTTGTTGTCACGTGTTAGCTTAATATCTAGGAAACG
____________________________________________________________
consensus CTGGTAAATTTTTCCAGTAGTTATGTTGTTGTCACGTGTTAGCTTAATATCTAGGAAACG
. : . : . : . : . : . :
JMFF010D14+ TTCATAGTTCCCAAGATCAAGGTCAACCTCACCACCCATCATCCAGGACATATACTTCTC
JMFF032I19+ TTCATAGTTCCCAAGATCAAGGTCAACCTCACCA-CCATCATCCAGGACATATACTTCTC
JMFS147C10+ TTCATAGTTCCCAAGATCAAGGTCAACCTCACCA-CCATCATCCAGGACATATACTTCTC
JMSF029A20+ TTCATAGTTCCCAAGATCAAGGTCAACCTCACCA-CCATCATCCAGGACATATACTTCTC
____________________________________________________________
consensus TTCATAGTTCCCAAGATCAAGGTCAACCTCACCA-CCATCATCCAGGACATATACTTCTC
. : . : . : . : . : . :
JMFF010D14+ CATGCTCAAAAGGAGACATAGTTCCAGCATCAGTATTCAAGTAAGGATCAATTTTAATGT
JMFF032I19+ CATGCTCAAAAGGAGACATAGTTCCAGCATCAGTATTCAAGTAAGGATCAATTTTAATGT
JMFS147C10+ CATGCTCAAAAGGAGACATAGTTCCAGCATCAGTATTCAAGTAAGGATCAATTTTAATGT
JMSF029A20+ CATGCTCAAAAGGAGACATAGTTCCAGCATCAGTATTCAAGTAAGGATCAATTTTAATGT
____________________________________________________________
consensus CATGCTCAAAAGGAGACATAGTTCCAGCATCAGTATTCAAGTAAGGATCAATTTTAATGT
. : . : . : . : . : . :
JMFF010D14+ GAGTAACTCGAAGTCCGCAGGCCTTAAGGATGAGGCCAATACTGCTAGCAGTGACTCCTT
JMFF032I19+ GAGTAACTCGAAGTCCGCAGGCCTTAAGGATGAGGCCAATACTGCTAGCAGTGACTCCTT
JMFS147C10+ GAGTAACTCGAAGTCCGCAGGCCTTAAGGATGAGGCCAATACTGCTAGCAGTGACTCCTT
JMSF029A20+ GAGTAACTCGAAGTCCGCAGGCCTTAAGGATGAGGCCAATACTGCTAGCAGTGACTCCTT
____________________________________________________________
consensus GAGTAACTCGAAGTCCGCAGGCCTTAAGGATGAGGCCAATACTGCTAGCAGTGACTCCTT
. : . : . : . : . : . :
JMFF010D14+ TCCCGAGCCCGCTCACCACACCTCCGGTAACCAATATGTATTTCATTCTCGATCCTCTTT
JMFF032I19+ TCCCGAGCCCGCTCACCACACCTCCGGTAACCAATATGTATTTCATTCTCGATCCTCTTT
JMFS147C10+ TCCCGAGCCCGCTCACCACACCTCCGGTAACCAATATGTATTTCATTCTCGATCCTCTTT
JMSF029A20+ TCCCGAGCCCGCTCACCACACCTCCGGTAACCAATATGTATTTCATTCTCGATCCTCTTT
____________________________________________________________
consensus TCCCGAGCCCGCTCACCACACCTCCGGTAACCAATATGTATTTCATTCTCGATCCTCTTT
. : . : . : . : . : . :
JMFF010D14+ CTTCTCTGTACGTTTTTTTTATTTTTTAAATTTTCCGGTGAACAAAACCCCCTACCTGCA
JMFF032I19+ CTTCTCTGTACGTTTTTTTTATTTTTTAAATTTTCCGGTGAACAAAACCCCCTACCTGCA
JMFS147C10+ CTTCTCTGTACGTTTTTTTTATTTTTTAAATTTTCCGGTGAACAAAACCCCCTACCTGCA
JMSF029A20+ CTTCTCTGTACGTTTTTTTTATTTTTTAAATTTTCCGGTGAACAAAACCCCCTACCTGCA
____________________________________________________________
consensus CTTCTCTGTACGTTTTTTTTATTTTTTAAATTTTCCGGTGAACAAAACCCCCTACCTGCA
. : . : . : . : . : . :
JMFF010D14+ ATTCTCGTAAACCACTGGAGCTGAGCTGAGTGACCAGAGGGGTCAAAAACGGAAAGCGCA
JMFF032I19+ ATTCTCGTAAACCACTGGAGCTGAGCTGAGTGACCAGAGGGGTCAAAAACGGAAAGCGCA
JMFS147C10+ ATTCTCGTAAACCACTGGAGCTGAGCTGAGTGACCAGAGGGGTCAAAAACGGAAAGCGCA
JMSF029A20+ ATTCTCGTAAACCACTGGAGCTGAGCTGAGTGACCAGAGGGGTCAAAAACGGAAAGCGCA
____________________________________________________________
consensus ATTCTCGTAAACCACTGGAGCTGAGCTGAGTGACCAGAGGGGTCAAAAACGGAAAGCGCA
. : . : . : . : . : . :
JMFF010D14+ CCAAC
JMFF032I19+ CCAAC
JMFS147C10+ CCAACACTGTCTGCCACCGGGCCAGACCCGACCCTTATCCACTAAGCTCTATGTTTCCAG
JMSF029A20+ CCAACACTGTCTGCCACCGGGCCAGACCCGACCCTTATCCACTAAGCTCTATGTTTCCAG
____________________________________________________________
consensus CCAACACTGTCTGCCACCGGGCCAGACCCGACCCTTATCCACTAAGCTCTATGTTTCCAG
. : . : . : . : . : . :
JMFS147C10+ GGAGCAGAGACGCAACAAAGAGACGTGTATACACGTGTGCTTGTATATCTATATATATGT
JMSF029A20+ GGAGCAGAGACGCAACAAAGAGACGTGTATACACGTGTGCTTGTATATCTATATATATGT
____________________________________________________________
consensus GGAGCAGAGACGCAACAAAGAGACGTGTATACACGTGTGCTTGTATATCTATATATATGT
. : . : . : . : . : . :
JMFS147C10+ ATAGATATATGATATAGAAATATATAAATATAAAGAAGGAGAAGAAATGGATATGAGATG
JMSF029A20+ ATAGATATATGATATAGAAATATATAAATATAAAGAAGGAGAAGAAATGGATATGAGATG
____________________________________________________________
consensus ATAGATATATGATATAGAAATATATAAATATAAAGAAGGAGAAGAAATGGATATGAGATG
. : . : . : . : . : . :
JMFS147C10+ AAGCAAATAGACACAGACGATGAAAACGTTGAGAGGATTGAAGAG
JMSF029A20+ AAGCAAATAGACACAGACGATGAAAACGTTGAGAGGATTGAAGAGAGGGAGACGGAGATC
____________________________________________________________
consensus AAGCAAATAGACACAGACGATGAAAACGTTGAGAGGATTGAAGAGAGGGAGACGGAGATC