| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF003O09 | Sequence | 309 | 000781 (6) | ref|XP_006487858.1| | 98.2 | PREDICTED: uncharacterized protein LOC102630795 [Citrus sinensis] | |||||
| JMSF007O03 | Sequence | 324 | 000781 (6) | ref|XP_009770039.1| | 7e-34 | PREDICTED: large subunit GTPase 1 homolog [Nicotiana sylvestris] | 694 | 014025 (5) | ref|XP_002264570.1| | 6e-53 | PREDICTED: large subunit GTPase 1 homolog [Vitis vinifera] |
| JMSF018H08 | Sequence | 250 | 000781 (6) | ref|XP_006487858.1| | 99.8 | PREDICTED: uncharacterized protein LOC102630795 [Citrus sinensis] | 746 | 014025 (5) | ref|XP_002264570.1| | 2e-63 | PREDICTED: large subunit GTPase 1 homolog [Vitis vinifera] |
| JMSF027C18 | Sequence | 607 | 000781 (6) | ref|XP_009770039.1| | 4e-62 | PREDICTED: large subunit GTPase 1 homolog [Nicotiana sylvestris] | 750 | 014025 (5) | ref|XP_002264570.1| | 8e-65 | PREDICTED: large subunit GTPase 1 homolog [Vitis vinifera] |
| JMSF032D24 | Sequence | 697 | 000781 (6) | ref|XP_004156028.1| | 6e-97 | PREDICTED: large subunit GTPase 1 homolog [Cucumis sativus] | 564 | 014025 (5) | ref|XP_009335155.1| | 7e-18 | PREDICTED: large subunit GTPase 1 homolog [Pyrus x bretschneideri] |
| JMSF032O08 | Sequence | 674 | 000781 (6) | ref|XP_004156028.1| | 4e-106 | PREDICTED: large subunit GTPase 1 homolog [Cucumis sativus] | 699 | 014025 (5) | ref|XP_002264570.1| | 3e-48 | PREDICTED: large subunit GTPase 1 homolog [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMSF032O08+ TGTTCATCCACTTCTTGTGCATATGCCTCAAGGTCGGGACAGCGGTAAAAGAGGGGGTCC
JMSF032D24+ GGACAGCNGTAAAAGAGGGGGTCC
____________________________________________________________
consensus TGTTCATCCACTTCTTGTGCATATGCCTCAAGGTCGGGACAGCGGTAAAAGAGGGGGTCC
. : . : . : . : . : . :
JMSF032O08+ CGAGCATCAACCACCATCACAAGCAAATCACAACGTTCAACCACTCTCCAAAGCTGTCTC
JMSF032D24+ CGAGCATCAACCACCATCACAAGCAAATCACAACGTTCAACCACTCTCCAAAGCTGTCTC
____________________________________________________________
consensus CGAGCATCAACCACCATCACAAGCAAATCACAACGTTCAACCACTCTCCAAAGCTGTCTC
. : . : . : . : . : . :
JMSF032O08+ CAAATATCAAGGTTTTTCTCAAATGGAGTTAGGACAAGATTCTCATTCTCCTCAAGTCTC
JMSF032D24+ CAAATATCAAGGTTTTTCTCAAATGGAGTTAGGACAAGATTCTCATTCTCCTCAAGTCTC
JMSF027C18+ CTCAAGTCTC
____________________________________________________________
consensus CAAATATCAAGGTTTTTCTCAAATGGAGTTAGGACAAGATTCTCATTCTCCTCAAGTCTC
. : . : . : . : . : . :
JMSF032O08+ GCAAGGCTCCTCCGCCAAATTAGAAAAGCTTGCCTTTCATTGGTATCAAGCTCTTCAACA
JMSF032D24+ GCAAGGCTCCTCCGCCAAATTAGAAAAGCTTGCCTTTCATTGGTATCAAGCTCTTCAACA
JMSF027C18+ GCAAGGCTCCTCCGCCAAATTAGAAAAGCTTGCCTTTCATTGGTATCAAGCTCTTCAACA
____________________________________________________________
consensus GCAAGGCTCCTCCGCCAAATTAGAAAAGCTTGCCTTTCATTGGTATCAAGCTCTTCAACA
. : . : . : . : . : . :
JMSF032O08+ GACATTCTAGAATTCCATGGTGGCCTCCGTGGAACATGAAGACTGCTAGCATGCAATTCC
JMSF032D24+ GACATTCTAGAATTCCATGGTGGCCTCCGTGGAACATGAAGACTGCTAGCATGCAATTCC
JMSF027C18+ GACATTCTAGAATTCCATGGTGGCCTCCGTGGAACATGAAGACTGCTAGCATGCAATTCC
____________________________________________________________
consensus GACATTCTAGAATTCCATGGTGGCCTCCGTGGAACATGAAGACTGCTAGCATGCAATTCC
. : . : . : . : . : . :
JMSF032O08+ TCCTCTCTCTTTTGCATCTCCCTCCTTTGCTCAGGTGTAACCTCACTATTGCTGGAGCCA
JMSF032D24+ TCCTCTCTCTTTTGCATCTCCCTCCTTTGCTCAGGTGTAACCTCACTATTGCTGGAGCCA
JMSF007O03+ CACTATTGCTGGAGCCA
JMSF027C18+ TCCTCTCTCTTTTGCATCTCCCTCCTTTGCTCAGGTGTAACCTCACTATTGCTGGAGCCA
____________________________________________________________
consensus TCCTCTCTCTTTTGCATCTCCCTCCTTTGCTCAGGTGTAACCTCACTATTGCTGGAGCCA
. : . : . : . : . : . :
JMSF032O08+ GAGTCC-AAATTGATGAGAAGGTTAACGGGAGGATGGCGGTCGGAGAAGAGGCGCTGTGC
JMSF032D24+ GAGTCC-AAATTGATGAGAAGGTTAACGGGAGGATGGCGGTCGGAGAAAAGGCGCTGTGC
JMSF007O03+ GAGTCCAAAATTGATGAGAAGGTTAACGGGAGGATGGCGGTCGGAGAAGAGGCGCTGTGC
JMSF027C18+ GAGTCC-AAATTGATGAGAAGGTTAACGGGAGGATGGCGGTCGGAGAAGAGGCGCTGTGC
____________________________________________________________
consensus GAGTCC-AAATTGATGAGAAGGTTAACGGGAGGATGGCGGTCGGAGAAGAGGCGCTGTGC
. : . : . : . : . : . :
JMSF032O08+ CTCATCGGCCTGATCGATGACGGCGTCGATGTCGTTGACCTCGGTGACGGACTCGAGAAC
JMSF018H08+ CGGCCTGATCGATGACGGCGTCGATGTCGTTGACCTCGGTGACGGACTCGAGAAC
JMSF032D24+ CTCATCGGCCTGATCGATGACGGCGTCGATGTCGTTGACCTCGGTGACGGACTCGAGAAC
JMSF003O09+ GCCTGATCGATGACGGCGTCGATGTCGTTGACCTCGGTGACGGACTCGAGAAC
JMSF007O03+ CTCATCGGCCTGATCGATGACGGCGTCGATGTCGTTGACCTCGGTGACGGACTCGAGAAC
JMSF027C18+ CTCATCGGCCTGATCGATGACGGCGTCGATGTCGTTGACCTCGGTGACGGACTCGAGAAC
____________________________________________________________
consensus CTCATCGGCCTGATCGATGACGGCGTCGATGTCGTTGACCTCGGTGACGGACTCGAGAAC
. : . : . : . : . : . :
JMSF032O08+ CTTTTTGTGCTGGTTCCGGTAAAACCGACCTTTCTCTTTGGTCTGCTGGATCATCTGGTT
JMSF018H08+ CTTTTTGTGCTGGTTCCGGTAAAACCGACCTTTCTCTTTGGTCTGCTGGATCATCTGGTT
JMSF032D24+ CTTTTTGTGCTGGTTCCGGTAAAACCGACCTTTCTCTTTGGTCTGCTGGATCATCTGGTT
JMSF003O09+ CTTTTTGTGCTGGTTCCGGTAAAACCGACCTTTCTCTTTGGTCTGCTGGATCATCTGGTT
JMSF007O03+ CTTTTTGTGCTGGTTCCGGTAAAACCGACCTTTCTCTTTGGTCTGCTGGATCATCTGGTT
JMSF027C18+ CTTTTTGTGCTGGTTCCGGTAAAACCGACCTTTCTCTTTGGTCTGCTGGATCATCTGGTT
____________________________________________________________
consensus CTTTTTGTGCTGGTTCCGGTAAAACCGACCTTTCTCTTTGGTCTGCTGGATCATCTGGTT
. : . : . : . : . : . :
JMSF032O08+ GTGGTGCTTCACCAGAGCCCGCCCTAACCCCGTCTTCTCCCCCTTCCCCATTATCCTATA
JMSF018H08+ GTGGTGCTTCACCAGAGCCCGCCCTAACCCCGTCTTCTCCCCCTTCCCCATTATCCTATA
JMSF032D24+ GTGGTGCTTCACCAGAGCCCGCCCTAACCCCGTCTTCTCCCCCTTCCCCATTATCCTATA
JMSF003O09+ GTGGTGCTTCACCAGAGCCCGCCCTAACCCCGTCTTCTCCCCCTTCCCCATTATCCTATA
JMSF007O03+ GTGGTGCTTCACCAGAGCCCGCCCTAACCCCGTCTTCTCCCCCTTCCCCATTATCCTATA
JMSF027C18+ GTGGTGCTTCACCAGAGCCCGCCCTAACCCCGTCTTCTCCCCCTTCCCCATTATCCTATA
____________________________________________________________
consensus GTGGTGCTTCACCAGAGCCCGCCCTAACCCCGTCTTCTCCCCCTTCCCCATTATCCTATA
. : . : . : . : . : . :
JMSF032O08+ CCAGAAATGCCTCTATAGAGCTCTCTGTCTATCTCTATACCTCTCTCAATGTGTTTGTGT
JMSF018H08+ CCAGAAATGCCTCTATAGAGCTCTCTGTCTATCTCTATACCTCTCTCAATGTGTTTGTGT
JMSF032D24+ CCAGAAATGCCTCTATAGAGCTCTCTGTCTATCTCTATACCTCTCTCAATGTGTTTGTGT
JMSF003O09+ CCAGAAATGCCTCTATAGAGCTCTCTGTCTATCTCTATACCTCTCTCAATGTGTTTGTGT
JMSF007O03+ CCAGAAATGCCTCTATAGAG--CTCTGTCTATCTCTATACCTCTCTCAATGTGTTTGTGT
JMSF027C18+ CCAGAAATGCCTCTATAGAG--CTCTGTCTATCTCTATACCTCTCTCAATGTGTTTGTGT
____________________________________________________________
consensus CCAGAAATGCCTCTATAGAGCTCTCTGTCTATCTCTATACCTCTCTCAATGTGTTTGTGT
. : . : . : . : . : . :
JMSF032O08+ TTTTTCTGATTTTC
JMSF018H08+ TTTTTCTGATTTTC
JMSF032D24+ TTTTTCTGATTTTCAATCTTTCCGAGTAGTGGCGGTAGAGAAATTGGGAACGCCTTCGAG
JMSF003O09+ TTTTTCTGATTTTCAATCTTTCCGAGTAGTGGCGGTAGAGAAATTGGGAACGCCTTCGAG
JMSF007O03+ TTTTTCT
JMSF027C18+ TTTTTCTGATTTTCAATCTTTCCGAGTAGTGGCGGTAGAGAAATTGGGAACGCCTTCGAG
____________________________________________________________
consensus TTTTTCTGATTTTCAATCTTTCCGAGTAGTGGCGGTAGAGAAATTGGGAACGCCTTCGAG
. : . : . : . : . : . :
JMSF032D24+ ACGAGGGGAAA
JMSF003O09+ ACGAGGGGAAA
JMSF027C18+ ACGAGGGGAAACAACGGCTGACCGGGACAAGGAAGAAAGAAAAAGATGAAAACCGGTCCC
____________________________________________________________
consensus ACGAGGGGAAACAACGGCTGACCGGGACAAGGAAGAAAGAAAAAGATGAAAACCGGTCCC