Contig 000729:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002I11Sequence367010491 (3)ref|XP_006345420.1|58.5PREDICTED: uncharacterized protein LOC102581052 [Solanum tuberosum]674000729 (4)ref|XP_009758553.1|271PREDICTED: uncharacterized protein LOC104211225 [Nicotiana sylvestris]
JMSF014K22Sequence747000729 (4)ref|XP_009758553.1|302PREDICTED: uncharacterized protein LOC104211225 [Nicotiana sylvestris]
JMSF021G22Sequence516000729 (4)ref|XP_009758553.1|164PREDICTED: uncharacterized protein LOC104211225 [Nicotiana sylvestris]463000729 (4)ref|XP_009758553.1|164PREDICTED: uncharacterized protein LOC104211225 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF014K22+                                                              ATTCTCGA
                      ____________________________________________________________
consensus                                                                 ATTCTCGA
 
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rJMSF014K22+          ANGATTNAACGACACCGAAAGGGTTCCTCTACCTTCAGGACAACACTATATTAAACTATT
                      ____________________________________________________________
consensus             ANGATTNAACGACACCGAAAGGGTTCCTCTACCTTCAGGACAACACTATATTAAACTATT
 
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rJMSF002I11+                TGATGCAAGCCGACACATNTAGGCTGTGGATTACGAATAAGGTGCCCTTGTCCC
rJMSF014K22+          GGAATNTGATGCAAGCCGACACATCTAGTCTGTGGATTACGAATAAGGTGCCCTTGTCCC
                      ____________________________________________________________
consensus             GGAATNTGATGCAAGCCGACACATCTAGTCTGTGGATTACGAATAAGGTGCCCTTGTCCC
 
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rJMSF002I11+          GAACATCCATTGATGGAAAGGACGCCTCGTGGTTTTCACAACAAGCAGACCTGGTGAAGA
rJMSF014K22+          GAACATCCATTGATGGAAAGGACGCCTCGTGGTTTTCACAACAAGCAGACCTGGTGAAGA
                      ____________________________________________________________
consensus             GAACATCCATTGATGGAAAGGACGCCTCGTGGTTTTCACAACAAGCAGACCTGGTGAAGA
 
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rJMSF002I11+          AAGTGGTGAGCACAATGCCGGTTCATCTCCAAGTTAACTACAAAGAAAGCGGCCCGAGTG
rJMSF014K22+          AAGTGGTGAGCACAATGCCGGTTCATCTCCAAGTTAACTACAAAGAAAGCGGCCCGAGTG
                      ____________________________________________________________
consensus             AAGTGGTGAGCACAATGCCGGTTCATCTCCAAGTTAACTACAAAGAAAGCGGCCCGAGTG
 
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rJMSF002I11+          GCCAGAACATTGCGCNGTGTGGGTCCGAGGTGTTTTACGTTCCTAGNCGTTTTACCCAGG
rJMSF014K22+          GCCAGAACATTGCGCTGTGTGGGTCCGAGGTGTTTTACGTTCCTAGACGTTTTACCCAGG
rJMSF021G22+                                   CGAGGTGTTTTACGTTCCTAGACGTTTTACCCAGG
JMSF021G22-                                    CGAGGTGTTTTACGTTCCTAGACGTTTTACCCAGG
                      ____________________________________________________________
consensus             GCCAGAACATTGCGCTGTGTGGGTCCGAGGTGTTTTACGTTCCTAGACGTTTTACCCAGG
 
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rJMSF002I11+          ACTTCATTGATCTCGTAGACTTAGTGGGTGACCTGCAAATACACCACAAGATTGCGGTGC
rJMSF014K22+          ACTTCATTGATCTCGTAGACTTAGTGGGTGACCTGCAAATACACCACAAGATTGCGGTGC
rJMSF021G22+          ACTTCATTGATCTCGTAGACTTAGTGGGTGACCTGCAAATACACCACAAGATTGCGGTGC
JMSF021G22-           ACTTCATTGATCTCGTAGACTTAGTGGGTGACCTGCAAATACACCACAAGATTGCGGTGC
                      ____________________________________________________________
consensus             ACTTCATTGATCTCGTAGACTTAGTGGGTGACCTGCAAATACACCACAAGATTGCGGTGC
 
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rJMSF002I11+          CCATGTTCTTCATGGCAATGGATGTGCCCCGAAATTTCGACCCTCTGCTGAATAGAATGA
rJMSF014K22+          CCATGTTNTTCATGGCAATGGATGTGCCCCGAAATTTCGACCCTCTGCTGAATAGAATGA
rJMSF021G22+          CCATGTTCTTCATGGCAATGGATGTGCCCCGAAATTTCGACCCTCTGCTGAATAGAATGA
JMSF021G22-           CCATGTTCTTCATGGCAATGGATGTGCCCCGAAATTTCGACCCTCTGCTGAATAGAATGA
                      ____________________________________________________________
consensus             CCATGTTCTTCATGGCAATGGATGTGCCCCGAAATTTCGACCCTCTGCTGAATAGAATGA
 
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rJMSF002I11+          TTTACAAGACGGGAATGCCGTCTACAAATTCATTGAATATGTACTCCGCTCAAGCACCGG
rJMSF014K22+          TTTACAAGACGGGAATGCCGTCTACAAATTCATTGAATATGTACTCCGCTCAAGCACCGG
rJMSF021G22+          TTTACAAGACGGGAATGCCGTCTACAAATTCATTGAATATGTACTCCGCTCAAGCACCGG
JMSF021G22-           TTTACAAGACGGGAATGCCGTCTACAAATTCATTGAATATGTACTCCGCTCAAGCACCGG
                      ____________________________________________________________
consensus             TTTACAAGACGGGAATGCCGTCTACAAATTCATTGAATATGTACTCCGCTCAAGCACCGG
 
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rJMSF002I11+          CAGTGAATCCATGGATAGTTTCCACCGAGTCTGACTTCGTAAAGCTAATACGGCTCATGG
rJMSF014K22+          CAGTGAATCCATGGATAGTTTCCACCGAGTCTGACTTCGTAAAGCTAATACGGCTCATGG
rJMSF021G22+          CAGTGAATCCATGGATAGTTTCCACCGAGTCTGACTTCGTAAAGCTAATACGGCTCATGG
JMSF021G22-           CAGTGAATCCATGGATAGTTTCCACCGAGTCTGACTTCGTAAAGCTAATACGGCTCATGG
                      ____________________________________________________________
consensus             CAGTGAATCCATGGATAGTTTCCACCGAGTCTGACTTCGTAAAGCTAATACGGCTCATGG
 
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rJMSF002I11+          CAGAAGGCGATCCCCTCTTAATGGAGTTGTTCTAAGGTTTGATACTTTAACACTTGTGAA
rJMSF014K22+          CAGAAGGCGATCCCCTCTTAATGGAGTTGTTCTAAGGTTTGATACTTTAACACTTGTGAA
rJMSF021G22+          CAGAAGGCGATCCCCTCTTAATGGAGTTGTTCTAAGGTTTGATACTTTAACACTTGTGAA
JMSF021G22-           CAGAAGGCGATCCCCTCTTAATGGAGTTGTTCTAAGGTTTGATACTTTAACACTTGTGAA
                      ____________________________________________________________
consensus             CAGAAGGCGATCCCCTCTTAATGGAGTTGTTCTAAGGTTTGATACTTTAACACTTGTGAA
 
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rJMSF002I11+          TATTTGGATGCTTTGGAGATTATAAAACCAACAGAAATCATGCAATACCTTTTTCCACAT
rJMSF014K22+          TATTTGGATGCTTTGGAGATTATAAAACCAACAGAAATCATGCAATACCTTTTTCCACAT
rJMSF021G22+          TATTTGGATGCTTTGGAGATTATAAAACCAACAGAAATCATGCAATACCTTTTTCCACAT
JMSF021G22-           TATTTGGATGCTTTGGAGATTATAAAACCAACAGAAATCATGCAATACCTTTTTCCACAT
                      ____________________________________________________________
consensus             TATTTGGATGCTTTGGAGATTATAAAACCAACAGAAATCATGCAATACCTTTTTCCACAT
 
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rJMSF002I11+          ACTTTCTTCAGTTCTTGATTTTTTTGCAGCAATAATCTCTGTTGTATTCTTTCACTTGTC
rJMSF014K22+          ACTTTCTTCAGTTCTTGATTTTTTTGCAGCAATAATCTCTGTTGTATTCTTTCACTTGTC
rJMSF021G22+          ACTTTCTTCAGTTCTTGATTTTTTTGCAGCAATAATCTCTGTTGTATTCTTTCACTTGTC
JMSF021G22-           ACTTTCTTCAGTTCTTGATTTTTTTGCAGCAATAATCTCTGTTGTATTCTTTCACTTGTC
                      ____________________________________________________________
consensus             ACTTTCTTCAGTTCTTGATTTTTTTGCAGCAATAATCTCTGTTGTATTCTTTCACTTGTC
 
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rJMSF002I11+          TGTAATCTGTATATACAT                                          
rJMSF014K22+          TGTAATCTGTATATACAT                                          
rJMSF021G22+          TGTAATC                                                     
JMSF021G22-           TGTAATCTGTATATACATTGTAACATTGTGCCAAGGATTGATTTTGTTCCAAAAAAAAAA
                      ____________________________________________________________
consensus             TGTAATCTGTATATACATTGTAACATTGTGCCAAGGATTGATTTTGTTCCAAAAAAAAAA