clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF005N14 | Sequence | 360 | 000708 (3) | ||||||||
JMSF018D03 | Sequence | 321 | 000708 (3) | 791 | 013944 (2) | ref|XP_006351887.1| | 9e-69 | PREDICTED: ALBINO3-like protein 3, mitochondrial-like isoform X4 [Solanum tuber | |||
JMSF035C06 | Sequence | 634 | 000708 (3) | ref|XP_010312846.1| | 2e-21 | PREDICTED: ALBINO3-like protein 2, chloroplastic [Solanum lycopersicum] ref|XP_0 | 661 | 013944 (2) | ref|XP_006351887.1| | 1e-58 | PREDICTED: ALBINO3-like protein 3, mitochondrial-like isoform X4 [Solanum tuber |
This contig is upended
. : . : . : . : . : . :
JMSF035C06+ CAACATTAGTTTAATTTGGTCTTTGTAACTCTTTCCCTGCCTTGGGGGGTGCA
____________________________________________________________
consensus CAACATTAGTTTAATTTGGTCTTTGTAACTCTTTCCCTGCCTTGGGGGGTGCA
. : . : . : . : . : . :
JMSF035C06+ GATGGAGAGGGCAAATTGGGAAGTATCTCTCCAATCCTNGTCATCTTGCGGATTAGCAAT
____________________________________________________________
consensus GATGGAGAGGGCAAATTGGGAAGTATCTCTCCAATCCTNGTCATCTTGCGGATTAGCAAT
. : . : . : . : . : . :
JMSF035C06+ ATTATAAAAGGAAATAATGCGAGCCTCATTGCCAATGTCCCAGAAGCAATAACCGCCCAC
____________________________________________________________
consensus ATTATAAAAGGAAATAATGCGAGCCTCATTGCCAATGTCCCAGAAGCAATAACCGCCCAC
. : . : . : . : . : . :
JMSF035C06+ CAAGGGAGCCCGGAGAGGTCGTGGTAGCCATCTACCAACGAAATCATCTTGCTAACGGGA
____________________________________________________________
consensus CAAGGGAGCCCGGAGAGGTCGTGGTAGCCATCTACCAACGAAATCATCTTGCTAACGGGA
. : . : . : . : . : . :
JMSF035C06+ AGAAACAAATCTTCAATATTCCCGCTACTATCCACATCGCCGCCAAGAAACGGGTCTGGC
JMSF005N14+ AGAAACGGGTCTGGC
____________________________________________________________
consensus AGAAACAAATCTTCAATATTCCCGCTACTATCCACATCGCCGCCAAGAAACGGGTCTGGC
. : . : . : . : . : . :
JMSF035C06+ CGCGCAAAGGGTTGAGCAGCCGTCAAGCTGTCATCCTTGAGCGGACAGCCTGCGGCGGAG
JMSF005N14+ CGCGCAAAGGGTTGAGCAGCCGTCAAGCTGTCATCCTTGAGCGGACAGCCTGCGGCGGAG
JMSF018D03+ AGCGGACAGCCTGCGGCGGAG
____________________________________________________________
consensus CGCGCAAAGGGTTGAGCAGCCGTCAAGCTGTCATCCTTGAGCGGACAGCCTGCGGCGGAG
. : . : . : . : . : . :
JMSF035C06+ TCGGACTCGCGAGTGGAGAAAGAACGTGGGGAAGAAATTCCATGGAACGGCGGTAGAAAT
JMSF005N14+ TCGGACTCGCGAGTGGAGAAAGAACGTGGGGAAGAAATTCCATGGAACGGCGGTAGAAAT
JMSF018D03+ TCGGACTCGCGAGTGGAGAAAGAACGTGGGGAAGAAATTCCATGGAACGGCGGTAGAAAT
____________________________________________________________
consensus TCGGACTCGCGAGTGGAGAAAGAACGTGGGGAAGAAATTCCATGGAACGGCGGTAGAAAT
. : . : . : . : . : . :
JMSF035C06+ TGCGGAGCACTAGCAAAAGAAGACGGCGGCACCGGACGGCAGAGAAGATGGTGCAGCCGC
JMSF005N14+ TGCGGAGCACTAGCAAAAGAAGACGGCGGCACCGGACGGCAGAGAAGATGGTGCAGCCGC
JMSF018D03+ TGCGGAGCACTAGCAAAAGAAGACGGCGGCACCGGACGGCAGAGAAGATGGTGCAGCCGC
____________________________________________________________
consensus TGCGGAGCACTAGCAAAAGAAGACGGCGGCACCGGACGGCAGAGAAGATGGTGCAGCCGC
. : . : . : . : . : . :
JMSF035C06+ CGCCGGTGACTGGAACCGTGCGATTGAGTAAAGGAGTGCGGAAAGTAGTATGAGGGTGTG
JMSF005N14+ CGCCGGTGACTGGAACCGTGCGATTGAGTAAAGGAGTGCGGAAAGTAGTATGAGGGTGTG
JMSF018D03+ CGCCGGTGACTGGAACCGTGCGATTGAGTAAAGGAGTGCGGAAAGTAGTATGAGGGTGTG
____________________________________________________________
consensus CGCCGGTGACTGGAACCGTGCGATTGAGTAAAGGAGTGCGGAAAGTAGTATGAGGGTGTG
. : . : . : . : . : . :
JMSF035C06+ GAGGGAACGCGAGGGATGAATCTCCGTTGTAAGAATTTCAGCATTGCCACTTCTGGCAAA
JMSF005N14+ GAGGGAACGCGAGGGATGAATCTCCGTTGTAAGAATTTCAGCATTGCCACTTCTGGCAAA
JMSF018D03+ GAGGGAACGCGAGGGATGAATCTCCGTTGTAAGAATTTCAGCATTGCCACTTCTGGCAAA
____________________________________________________________
consensus GAGGGAACGCGAGGGATGAATCTCCGTTGTAAGAATTTCAGCATTGCCACTTCTGGCAAA
. : . : . : . : . : . :
JMSF035C06+ AGGAGTCTCTGCAAAGTGTGATCGGGGAGTTAACATTTCCC
JMSF005N14+ AGGAGTCTCTGCAAAGTGTGATCGGGGAGTTAACATTTCCC
JMSF018D03+ AGGAGTCTCTGCAAAGTGTGATCGGGGAGTTAACATTTCCCAATACCCCGCACGCAATTC
____________________________________________________________
consensus AGGAGTCTCTGCAAAGTGTGATCGGGGAGTTAACATTTCCCAATACCCCGCACGCAATTC