Contig 000703:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043E03Sequence627000703 (8)ref|XP_006367701.1|3e-112PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like [Solanum tuberosum]626009779 (10)ref|XP_009776740.1|5e-53PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 isoform X2 [Nicotiana sylves
JMFF047L14Sequence638000703 (8)ref|XP_006367701.1|3e-100PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like [Solanum tuberosum]521009779 (10)ref|XP_009776740.1|4e-51PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 isoform X2 [Nicotiana sylves
JMSF009G06Sequence396000703 (8)ref|XP_006367701.1|1e-62PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like [Solanum tuberosum]745009779 (10)ref|XP_009593931.1|1e-112PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 isoform X2 [Nicotiana toment
JMSF010M13Sequence340000703 (8)ref|XP_006367701.1|9e-46PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like [Solanum tuberosum]731009779 (10)ref|XP_009593931.1|2e-103PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 isoform X2 [Nicotiana toment
JMSF013C24Sequence200000703 (8)ref|XP_004252371.1|2e-15PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 [Solanum lycopersicum]728009779 (10)ref|XP_009593931.1|1e-120PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 isoform X2 [Nicotiana toment
JMSF017K04Sequence563000703 (8)ref|XP_006367701.1|5e-85PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like [Solanum tuberosum]755009779 (10)ref|XP_009593931.1|8e-86PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 isoform X2 [Nicotiana toment
JMSF032K03Sequence701000703 (8)ref|XP_006367701.1|5e-123PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like [Solanum tuberosum]680009779 (10)ref|XP_009593931.1|1e-111PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 isoform X2 [Nicotiana toment
JMSF034F11Sequence683000703 (8)ref|XP_006367701.1|1e-123PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like [Solanum tuberosum]718009779 (10)ref|XP_009593931.1|3e-82PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 isoform X2 [Nicotiana toment

Alignment

This contig is upended


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JMSF034F11+                                                            TGCTGCATGAA
JMSF032K03+                                                                 CATGAA
                      ____________________________________________________________
consensus                                                              TGCTGCATGAA
 
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JMSF034F11+           GACACCATTGTTGAGCTGGCCAAATTGAGGATATTTTTTACGTAATACCATCCAGAATTG
JMFF043E03+                                                  ACGTAATACCATCCAGAATTG
JMFF047L14+                                       GGATATTTTTTACGTAATACCATCCAGAATTG
JMSF032K03+           GACACCATTGTTGAGCTGGCCAAATTGAGGATATTTTTTACGTAATACCATCCAGAATTG
                      ____________________________________________________________
consensus             GACACCATTGTTGAGCTGGCCAAATTGAGGATATTTTTTACGTAATACCATCCAGAATTG
 
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JMSF034F11+           CATCGGAGACACTGGTTTGACATTTTTATCAAGTTCATTAAATAAATCACGGGTTGCAAC
JMFF043E03+           CATCGGAGACACTGGTTTGACATTNTTATCAAGTTCATTAAATAAATCACGGGTTGCAAC
JMFF047L14+           CATCGGAGACACTGGTTTGACA-TTTTATCAAGTTCATTAAATAAATCACGGGTTGCAAC
JMSF032K03+           CATCGGAGACACTGGTTTGACATTTTTATCAAGTTCATTAAATAAATCACGGGTTGCAAC
                      ____________________________________________________________
consensus             CATCGGAGACACTGGTTTGACATTTTTATCAAGTTCATTAAATAAATCACGGGTTGCAAC
 
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JMSF034F11+           AGTCAGAAGATGAGATGAGCTATCCAGATCATTTCGTCTATCCGCATGAGGGTACAGCGA
JMFF043E03+           AGTCAGAAGATGAGATGAGCTATCCAGATCATTTCGTCTATCCGCATGAGGGTACAGCGA
JMFF047L14+           AGTCAGAAGATGAGATGAGCTATCCAGATCATTTCGTCTATCCGCATGAGGGTACAGCGA
JMSF032K03+           AGTCAGAAGATGAGATGAGCTATCCAGATCATTTCGTCTATCCGCATGAGGGTACAGCGA
JMSF017K04+                                                CTATCCGCATGAGGGTACAGCGA
                      ____________________________________________________________
consensus             AGTCAGAAGATGAGATGAGCTATCCAGATCATTTCGTCTATCCGCATGAGGGTACAGCGA
 
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JMSF034F11+           AAGAGCAGACTTCAGTTCTGGAACAGAATGAAGGCATTGAACAGTGGAGTTCATGTAACA
JMFF043E03+           AAGAGCAGACTTCAGTTCTGGAACAGAATGAAGGCATTGAACAGTGGAGTTCATGTAACA
JMFF047L14+           AAGAGCAGACTTCAGTTCTGGAACAGAATGAAGGCATTGAACAGTGGAGTTCATGTAACA
JMSF032K03+           AAGAGCAGACTTCAGTTCTGGAACAGAATGAAGGCATTGAACAGTGGAGTTCATGTAACA
JMSF017K04+           AAGAGCAGACTTCAGTTCTGGAACAGAATGAAGGCATTGAACAGTGGAGTTCATGTAACA
                      ____________________________________________________________
consensus             AAGAGCAGACTTCAGTTCTGGAACAGAATGAAGGCATTGAACAGTGGAGTTCATGTAACA
 
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JMSF034F11+           TGTATTTCCTAGATTAAACAAGCCAGCAGAATGACCCACATTAATAACTTGCTCCTCTTC
JMSF009G06+                              AAGCCAGCAGAATGACCCACATTAATAACTTGCTCCTCTTC
JMFF043E03+           TGTATTTCCTAGATTAAACAAGCCAGCAGAATGACCCACATTAATAACTTGCTCCTCTTC
JMFF047L14+           TGTATTTCCTAGATTAAACAAGCCAGCAGAATGACCCACATTAATAACTTGCTCCTCTTC
JMSF032K03+           TGTATTTCCTAGATTAAACAAGCCAGCAGAATGACCCACATTAATAACTTGCTCCTCTTC
JMSF017K04+           TGTATTTCCTAGATTAAACAAGCCAGCAGAATGACCCACATTAATAACTTGCTCCTCTTC
                      ____________________________________________________________
consensus             TGTATTTCCTAGATTAAACAAGCCAGCAGAATGACCCACATTAATAACTTGCTCCTCTTC
 
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JMSF034F11+           TGGCATATCTTCAACAAACACAGGGCTTTTTTCAGGAGCCTTGACAATTTCATCAGCAGT
JMSF009G06+           TGGCATATCTTCAACAAACACAGGGCTTTTTTCAGGAGCCTTGACAATTTCATCAGCAGT
JMFF043E03+           TGGCATATCTTCAACAAACACAGGGCTTTTTTCAGGAGCCTTGACAATTTCATCAGCAGT
JMFF047L14+           TGGCATATCTTCAACAAACACAGGGCTTTTTTCAGGAGCCTTGACAATTTCATCAGCAGT
JMSF032K03+           TGGCATATCTTCAACAAACACAGGGCTTTTTTCAGGAGCCTTGACAATTTCATCAGCAGT
JMSF010M13+                                           CAGGAGCCTTGACAATTTCATCAGCAGT
JMSF017K04+           TGGCATATCTTCAACAAACACAGGGCTTTTTTCAGGAGCCTTGACAATTTCATCAGCAGT
                      ____________________________________________________________
consensus             TGGCATATCTTCAACAAACACAGGGCTTTTTTCAGGAGCCTTGACAATTTCATCAGCAGT
 
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JMSF034F11+           GCCCATCATCATTAACCTTTGTCCCTCTTTCACTGCCAGTTTTGACCAATCTGCATCATC
JMSF009G06+           GCCCATCATCATTAACCTTTGTCCCTCTTTCACTGCCAGTTTTGACCAATCTGCATCATC
JMFF043E03+           GCCCATCATCATTAACCTTTGTCCCTCTTTCACTGCCAGTTTTGACCAATCTGCATCATC
JMFF047L14+           GCCCATCATCATTAACCTTTGTCCCTCTTTCACTGCCAGTTTTGACCAATCTGCATCATC
JMSF032K03+           GCCCATCATCATTAACCTTTGTCCCTCTTTCACTGCCAGTTTTGACCAATCTGCATCATC
JMSF010M13+           GCCCATCATCATTAACCTTTGTCCCTCTTTCACTGCCAGTTTTGACCAATCTGCATCATC
JMSF017K04+           GCCCATCATCATTAACCTTTGTCCCTCTTTCACTGCCAGTTTTGACCAATCTGCATCATC
                      ____________________________________________________________
consensus             GCCCATCATCATTAACCTTTGTCCCTCTTTCACTGCCAGTTTTGACCAATCTGCATCATC
 
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JMSF034F11+           CTTCAACAAACCACCTTTAACCATAATCTTCTGCCTTTCAGGTGGCACCCCAGTCAGATC
JMSF009G06+           CTTCAACAAACCACCTTTAACCATAATCTTCTGCCTTTCAGGTGGCACCCCAGTCAGATC
JMFF043E03+           CTTCAACAAACCACCTTTAACCATAATCTTCTGCCTTTCAGGTGGCACCCCAGTCAGATC
JMFF047L14+           CTTCAACAAACCACCTTTAACCATAATCTTCTGCCTTTCAGGTGGCACCCCAGTCAGATC
JMSF013C24+                                                          CCCCAGTCAGATC
JMSF032K03+           CTTCAACAAACCACCTTTAACCATAATCTTCTGCCTTTCAGGTGGCACCCCAGTCAGATC
JMSF010M13+           CTTCAACAAACCACCTTTAACCATAATCTTCTGCCTTTCAGGTGGCACCCCAGTCAGATC
JMSF017K04+           CTTCAACAAACCACCTTTAACCATAATCTTCTGCCTTTCAGGTGGCACCCCAGTCAGATC
                      ____________________________________________________________
consensus             CTTCAACAAACCACCTTTAACCATAATCTTCTGCCTTTCAGGTGGCACCCCAGTCAGATC
 
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JMSF034F11+           AAATAGCTGGCATTTGAAGACATATGGAGGCTGGCTAGTATCAATTTCCACAGCAGGAAA
JMSF009G06+           AAATAGCTGGCATTTGAAGACATATGGAGGCTGGCTAGTATCAATTTCCACAGCAGGAAA
JMFF043E03+           AAATAGCTGGCATTTGAAGACATATGGAGGCTGGCTAGTATCAATTTCCACAGCAGGAAA
JMFF047L14+           AAATAGCTGGCATTTGAAGACATATGGAGGCTGGCTAGTATCAATTTCCACAGCAGGAAA
JMSF013C24+           AAATAGCTGGCATTTGAAGACATATGGAGGCTGGCTAGTATCAATTTCCACAGCAGGAAA
JMSF032K03+           AAATAGCTGGCATTTGAAGACATATGGAGGCTGGCTAGTATCAATTTCCACAGCAGGAAA
JMSF010M13+           AAATAGCTGGCATTTGAAGACATATGGAGGCTGGCTAGTATCAATTTCCACAGCAGGAAA
JMSF017K04+           AAATAGCTGGCATTTGAAGACATATGGAGGCTGGCTAGTATCAATTTCCACAGCAGGAAA
                      ____________________________________________________________
consensus             AAATAGCTGGCATTTGAAGACATATGGAGGCTGGCTAGTATCAATTTCCACAGCAGGAAA
 
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JMSF034F11+           CACCTCCTTTTGCCATTTTACGCTCACTGTAACCATGGTAATAGGGAGCTTCGGCGTGCG
JMSF009G06+           CACCTCCTTTTGCCATTTTACGCTCACTGTAACCATGGTAATAGGGAGCTTCGGCGTGCG
JMFF043E03+           CACCTCCTTTTGCCATTTTACGCTCACTGTAACCATGGTAATAGGGAGCTTCGGCGTGCG
JMFF047L14+           CACCTCCTTTTGCCATTTTACGCTCACTGTAACCATGGTAATAGGGAGCTTCGGCGTGCG
JMSF013C24+           CACCTCCTTTTGCCATTTTACGCTCACTGTAACCATGGTAATAGGGAGCTTCGGCGTGCG
JMSF032K03+           CACCTCCTTTTGCCATTTTACGCTCACTGTAACCATGGTAATAGGGAGCTTCGGCGTGCG
JMSF010M13+           CACCTCCTTTTGCCATTTTACGCTCACTGTAACCATGGTAATAGGGAGCTTCGGCGTGCG
JMSF017K04+           CACCTCCTTTTGCCATTTTACGCTCACTGTAACCATGGTAATAGGGAGCTTCGGCGTGCG
                      ____________________________________________________________
consensus             CACCTCCTTTTGCCATTTTACGCTCACTGTAACCATGGTAATAGGGAGCTTCGGCGTGCG
 
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JMSF034F11+           CAGGATCGGGATAGAAGAAGAGTGGGATGGCGTCTTCTGTTTTGAACTTTGCTTGAGGAG
JMSF009G06+           CAGGATCGGGATAGAAGAAGAGTGGGATGGCGTCTTCTGTTTTGAACTTTGCT       
JMFF043E03+           CAGGATCGGGATAGAAGAAGAGTGGGATGGCGTCTTCTGTTTTGAACTTTGCTTGAGGAG
JMFF047L14+           CAGGATCGGGATAGAAGAAGAGTGGGATGGCGTCTTCTGTTTTGAACTTTGCTTGAGGAG
JMSF013C24+           CAGGATCGGGATAGAAGAAGAGTGGGATGGCGTCTTCTGTTTTGAACTTTGCTTGAGGAG
JMSF032K03+           CAGGATCGGGATAGAAGAAGAGTGGGATGGCGTCTTCTGTTTTGAACTTTGCTTGAGGAG
JMSF010M13+           CAGGATCGGGATAGAAGAAGAGTGGGATGGCGTCTTCTGTTTTGAACTTTGCTTGAGGAG
JMSF017K04+           CAGGATCGGGATAGAAGAAGAGTGGGATGGCGTCTTCTGTTTTGAACTTTGCTTGAGGAG
                      ____________________________________________________________
consensus             CAGGATCGGGATAGAAGAAGAGTGGGATGGCGTCTTCTGTTTTGAACTTTGCTTGAGGAG
 
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JMSF034F11+           AAGGGCAAATC                                                 
JMFF043E03+           AAGGGC                                                      
JMFF047L14+           AA                                                          
JMSF013C24+           AAGGGC                                                      
JMSF032K03+           AAGGGCAAATCGCACCAGGCGGCCAGAAGAAGGC                          
JMSF010M13+           AAGGGCAAATC                                                 
JMSF017K04+           AAGGGCAAATCGCACCAGGCGGCCAGAAGAAGGCAATATATCGGCGTAGAGTAGACGATC
                      ____________________________________________________________
consensus             AAGGGCAAATCGCACCAGGCGGCCAGAAGAAGGCAATATATCGGCGTAGAGTAGACGATC