Contig 000690:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS027C10Sequence540000690 (6)
JMFS052A08Sequence403000690 (6)ref|XP_009773798.1|2e-18PREDICTED: cyclin-T1-4-like [Nicotiana sylvestris] ref|XP_009773799.1| PREDICTED
JMFS052C08Sequence534000690 (6)ref|XP_009616698.1|8e-17PREDICTED: cyclin-T1-4-like [Nicotiana tomentosiformis] ref|XP_009616699.1| PRED
JMFS062D03Sequence618000690 (6)ref|XP_002268838.2|2e-07PREDICTED: cyclin-T1-5-like [Vitis vinifera] ref|XP_010644871.1| PREDICTED: cycl
JMSF004B17Sequence248000690 (6)446024456
JMSF016H02Sequence241000690 (6)740008427 (2)ref|XP_009773798.1|2e-27PREDICTED: cyclin-T1-4-like [Nicotiana sylvestris] ref|XP_009773799.1| PREDICTED

Alignment

This contig is upended


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JMFS052C08+                                                                    TTT
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consensus                                                                      TTT
 
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JMFS052C08+           GCGCAATTAAGTCTCTTTCTTCAAATCAATCCCATCTTGTCTAGAGGGGGAATCTTCTTC
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consensus             GCGCAATTAAGTCTCTTTCTTCAAATCAATCCCATCTTGTCTAGAGGGGGAATCTTCTTC
 
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JMFS052C08+           AATCTCCTTCCTAGAGAAATACCAGCGGCCACCACTTTCCTCTGGCATTTCTTGAGAGAT
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consensus             AATCTCCTTCCTAGAGAAATACCAGCGGCCACCACTTTCCTCTGGCATTTCTTGAGAGAT
 
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JMFS052C08+           CTTATAAGCTCCAGCTTCATGCACTCCATGGTTTGAGGAATCACCAGCCAAAGCAGCCAT
                      ____________________________________________________________
consensus             CTTATAAGCTCCAGCTTCATGCACTCCATGGTTTGAGGAATCACCAGCCAAAGCAGCCAT
 
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JMFS052C08+           ATGTACCACTTGACCCACCAAATTATGAACAAATTAAAAGGTCTCGGGATAGCAAATGCT
JMFS027C10+                                                       CGGGATAGCAAATGCT
JMFS052A08+                                                       CGGGATAGCAAATGCT
JMFS062D03+                                                       CGGGATAGCAAATGCT
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consensus             ATGTACCACTTGACCCACCAAATTATGAACAAATTAAAAGGTCTCGGGATAGCAAATGCT
 
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JMFS052C08+           GACGGGCCAATAATTAGGGTTCCTCTCAATTAGGCTACCGCCCTGCAACACAAGATATAG
JMFS027C10+           GACGGGCCAATAATTAGGGTTCCTCTCAATTAGGCTACCGCCCTGCAACACAAGATATAG
JMFS052A08+           GACGGGCCAATAATTAGGGTTCCTCTCATTTAGGCTACCGCCCTGCAACACAAGATATAG
JMFS062D03+           GACGGGCCAATAATTAGGGTTCCTCTCAATTAGGCTACCGCCCTGCAACACAAGATATAG
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consensus             GACGGGCCAATAATTAGGGTTCCTCTCAATTAGGCTACCGCCCTGCAACACAAGATATAG
 
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JMFS052C08+           CTGAATGAGGTCTGCGACAACACAATCAATTCACGGGTTGAGCCCTAAGGAAACCCAAAA
JMFS027C10+           CTGAATGAGGTCTGCGACAACACAATCAATTCACGGGTTGAGCCCTAAGGAAACCCAAAA
JMSF004B17+                                                     CCCTAAGGAAACCCAAAA
JMFS052A08+           CTGAATGAGGTCTGCGACAACACAATCAATTCACGGGTTGAGCCCTAAGGAAACCCAAAA
JMFS062D03+           CTGAATGAGGTCTGCGACAACACAATCAATTCACGGGTTGAGCCCTAAGGAAACCCAAAA
JMSF016H02+                                                                      A
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consensus             CTGAATGAGGTCTGCGACAACACAATCAATTCACGGGTTGAGCCCTAAGGAAACCCAAAA
 
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JMFS052C08+           CCGAAGCCCTAGAAAAAATTTCTTGTAAAAATTTTATAAAAAAATAAAATTCTTAAACCG
JMFS027C10+           CCGAAGCCCTAGAAAAAATTTCTTGTAAAAATTTTATAAAAAAATAAAATTCTTAAACCG
JMSF004B17+           CCGAAGCCCTAGAAAAAATTTCTTGTAAAAATTTTATAAAAAAATAAAATTCTTAAACCG
JMFS052A08+           CCGAAGCCCTAGAAAAAATTTCTTG                                   
JMFS062D03+           CCGAAGCCCTAGAAAAAATTTCTTGTAAAAATTTTATAAAAAAATAAAATTCTTAAACCG
JMSF016H02+           CCGAAGCCCTAGAAAAAATTTCTNGTAAAAATTTTATAAAAAAATAAAATTCTTAAACCG
                      ____________________________________________________________
consensus             CCGAAGCCCTAGAAAAAATTTCTTGTAAAAATTTTATAAAAAAATAAAATTCTTAAACCG
 
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JMFS052C08+           CTCTAGTCTTCTACGAATGACGGCGCCGTCGCCTTTTTCACCCTTCCGCGGCGAAATCCA
JMFS027C10+           CTCTAGTCTTCTACGAATGACGGCGCCGTCGCCTTCTTCACCCTTCCGCGGCGAAATCCA
JMSF004B17+           CTCTAGTCTTCTACGAATGACGGCGCCGTCGCCTTCTTCACCCTTCCGCGGCGAAATCCA
JMFS062D03+           CTCTAGTCTTCTACGAATGACGGCGCCGTCGCCTTCTTCACCCTTCCGCGGCGAAATCCA
JMSF016H02+           CTCTAGTCTTCTACGAATGACGGCGCCGTCGCCTTCTTCACCCTTCCGCGGCGAAATCCA
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consensus             CTCTAGTCTTCTACGAATGACGGCGCCGTCGCCTTCTTCACCCTTCCGCGGCGAAATCCA
 
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JMFS052C08+           ATGAGGGACGGGCTAGAATGAGCCGACAGAACTCGTACGGCGTGGCTGACT         
JMFS027C10+           ACGAGGGACGGGCTGAGAAGAGCCGACAGAACTCGGACGGCGTGGCTGACTCGATACTGA
JMSF004B17+           ACGAGGGACGGGCTGAGAAGAGCCGACAGAACTCGGACGGCGTGGCTGACTCGATACTGA
JMFS062D03+           ACGAGGGACGGGCTGAGAAGAGCCGACAGAACTCGGACGGCGTGGCTGACTCGATACTGA
JMSF016H02+           ACGAGGGACGGGCTGAGAAGAGCCGACAGAACTCGGACGGCGTGGCTGACTCGATACTGA
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consensus             ACGAGGGACGGGCTGAGAAGAGCCGACAGAACTCGGACGGCGTGGCTGACTCGATACTGA
 
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JMFS027C10+           CTCACTCGACGGAGAAGAGAGGAGAGGGTAGC                            
JMSF004B17+           CTCACTCGACGGAGAAGAGAGGAGAGGGTAGCGGGGCAATAGTGAGAT            
JMFS062D03+           CTCACTCGACGGAGAAGAGAGGAGAGGGTAGCGGGGCAATAGTGAGATTATGAGAAA   
JMSF016H02+           CTCACTCGACGGAGAAGAGAGGAGAGGGTAGCGGGGCAATAGTGAGATTATGAGAAAACC
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consensus             CTCACTCGACGGAGAAGAGAGGAGAGGGTAGCGGGGCAATAGTGAGATTATGAGAAAACC