Contig 000668:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005J18Sequence375000668 (4)ref|XP_009761857.1|4e-12PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana syl
JMSF009N23Sequence330000668 (4)ref|XP_009761857.1|3e-12PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana syl673005669 (4)ref|XP_009606738.1|3e-114PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana tom
JMSF013G08Sequence196000668 (4)648005669 (4)ref|XP_009606738.1|2e-114PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana tom
JMSF020G15Sequence704000668 (4)ref|XP_009761857.1|2e-76PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana syl753005669 (4)ref|XP_009606738.1|1e-113PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana tom

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF020G15+ TATCACTGCTTGAATTTACACCATTCAAAGG
                      ____________________________________________________________
consensus TATCACTGCTTGAATTTACACCATTCAAAGG
 
. : . : . : . : . : . :
JMSF020G15+ GAAAACTTGGGAGAGTATTGGAAGAAGATATGCCAATGTTTTTCCTGAACCAGTGTAGGA
                      ____________________________________________________________
consensus GAAAACTTGGGAGAGTATTGGAAGAAGATATGCCAATGTTTTTCCTGAACCAGTGTAGGA
 
. : . : . : . : . : . :
JMSF020G15+ CTGAATAACAACATCATGATTTTTAAGAATAGTTGGAATTGCAGCAGCCTGAACGTCTGT
                      ____________________________________________________________
consensus CTGAATAACAACATCATGATTTTTAAGAATAGTTGGAATTGCAGCAGCCTGAACGTCTGT
 
. : . : . : . : . : . :
JMSF020G15+ TGGAACTGTAAATCCTTCCTTCTCAAGTCTGTCAACCAGTAAAGATGGCAGGCCAAGCTC
                      ____________________________________________________________
consensus TGGAACTGTAAATCCTTCCTTCTCAAGTCTGTCAACCAGTAAAGATGGCAGGCCAAGCTC
 
. : . : . : . : . : . :
JMSF020G15+ AGAAAAGGATTTTGCAGCAAAAGGTGCTGCCCCTATGTCTATGGACTTCATCTCTTTCAC
                      ____________________________________________________________
consensus AGAAAAGGATTTTGCAGCAAAAGGTGCTGCCCCTATGTCTATGGACTTCATCTCTTTCAC
 
. : . : . : . : . : . :
JMSF020G15+ TCCATTGTTTCTTTTCTGGTTCACCTTTTTCTTGGTATTGTTCTTGGGGACTTCAATTGT
                      ____________________________________________________________
consensus TCCATTGTTTCTTTTCTGGTTCACCTTTTTCTTGGTATTGTTCTTGGGGACTTCAATTGT
 
. : . : . : . : . : . :
JMSF020G15+ GGAAACACCCTCCTGGAGCTTATTTTTAGCATTCCTGCTTATCGTTTCAACATCATTCTT
JMSF009N23+ TCAACATCATTCTT
JMSF005J18+ TCAACATCATTCTT
                      ____________________________________________________________
consensus GGAAACACCCTCCTGGAGCTTATTTTTAGCATTCCTGCTTATCGTTTCAACATCATTCTT
 
. : . : . : . : . : . :
JMSF020G15+ CAATCCAAGGCTAGCTAGTGTAAGAGGACCAAAGTCACTTAAAAACCTTACTCTGCCATT
JMSF009N23+ CAATCCAAGGCTAGCTAGTGTAAGAGGACCAAAGTCACTTAAAAACCTTACTCTGCCATT
JMSF005J18+ CAATCCAAGGCTAGCTAGTGTAAGAGGACCAAAGTCACTTAAAAACCTTACTCTGCCATT
                      ____________________________________________________________
consensus CAATCCAAGGCTAGCTAGTGTAAGAGGACCAAAGTCACTTAAAAACCTTACTCTGCCATT
 
. : . : . : . : . : . :
JMSF020G15+ AAGTGGAGGTATTCTAGTAAGCCCAGAAAGATTTCTCAGTGATAAGGAGTCCCCAAAATG
JMSF009N23+ AAGTGGAGGTATTCTAGTAAGCCCAGAAAGATTTCTCAGTGATAAGGAGTCCCCAAAATG
JMSF005J18+ AAGTGGAGGTATTCTAGTAAGCCCAGAAAGATTTCTCAGTGATAAGGAGTCCCCAAAATG
                      ____________________________________________________________
consensus AAGTGGAGGTATTCTAGTAAGCCCAGAAAGATTTCTCAGTGATAAGGAGTCCCCAAAATG
 
. : . : . : . : . : . :
JMSF020G15+ TAGAAATGCCCTTGTTGCAGATAGAGCAGGCATGATTTTGCAATTTCCAGTTTGACTGAG
JMSF009N23+ TAGAAATGCCCTTGTTGCAGATAGAGCAGGCATGATTTTGCAATTTCCAGTTTGACTGAG
JMSF005J18+ TAGAAATGCCCTTGTTGCAGATAGAGCAGGCATGATTTTGCAATTTCCAGTTTGACTGAG
JMSF013G08+ TTCCAGTTTGACTGAG
                      ____________________________________________________________
consensus TAGAAATGCCCTTGTTGCAGATAGAGCAGGCATGATTTTGCAATTTCCAGTTTGACTGAG
 
. : . : . : . : . : . :
JMSF020G15+ AGTGGCTATTTCATTCCTTATTGCCAACTAAGTGTAACGGAACAAGCCAAAAAGGTCTAA
JMSF009N23+ AGTGGCTATTTCATTCCTTATTGCCAACTAAGTGTAACGGAACAAGCCAAAAAGGTCTAA
JMSF005J18+ AGTGGCTATTTCATTCCTTATTGCCAACTAAGTGTAACGGAACAAGCCAAAAAGGTCTAA
JMSF013G08+ AGTGGCTATTTCATTCCTTATTGCCAACTAAGTGTAACGGAACAAGCCAAAAAGGTCTAA
                      ____________________________________________________________
consensus AGTGGCTATTTCATTCCTTATTGCCAACTAAGTGTAACGGAACAAGCCAAAAAGGTCTAA
 
. : . : . : . : . : . :
JMSF020G15+ AGCCCACTAGCAATGCAGTAGTTGGTCGTTTTAAAGCTTCACTAAGCATCAGCGCCCGGC
JMSF009N23+ AGCCCACTAGCAATGCAGTAGTTGGTCGTTTTAAAGCTTCACTAAGCATCAGCGCCCGGC
JMSF005J18+ AGCCCACTAGCAATGCAGTAGTTGGTCGTTTTAAAGCTTCACTAAGCATCAGCGCCCGGC
JMSF013G08+ AGCCCACTAGCAATGCAGTAGTTGGTCGTTTTAAAGCTTCACTAAGCATCAGCGCCCGGC
                      ____________________________________________________________
consensus AGCCCACTAGCAATGCAGTAGTTGGTCGTTTTAAAGCTTCACTAAGCATCAGCGCCCGGC
 
. : . : . : . : . : . :
JMSF020G15+ GGCGTTCTTGCG
JMSF009N23+ GGCGTTCTTGCG
JMSF005J18+ GGCGTTCTTGCGGATGAGAACAGAATGCCTTATCACACTTATCACTTTAAACTTACGCCC
JMSF013G08+ GGCGTTCTTGCGGATGAGAACAGAATGCCTTATCACACTTATCACTTTAAACTTACGCCC
                      ____________________________________________________________
consensus GGCGTTCTTGCGGATGAGAACAGAATGCCTTATCACACTTATCACTTTAAACTTACGCCC