Contig 000661:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012J24Sequence359000661 (2)gb|AAV88066.1|7e-06NBS-LRR protein [Ipomoea batatas]773019258
JMSF037M15Sequence697000661 (2)dbj|BAD18094.1|5e-17NBS-LRR protein [Ipomoea batatas]711018287ref|XP_006362422.1|1e-76PREDICTED: U-box domain-containing protein 7-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF037M15+                                                        GAGTTCATCTCTTGA
                      ____________________________________________________________
consensus                                                          GAGTTCATCTCTTGA
 
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JMSF037M15+           TGCTGCTGTAAACACAACCAATAAGGCATCGGAGCGTTTGTTCCTGGTTAAACTCTTGGG
                      ____________________________________________________________
consensus             TGCTGCTGTAAACACAACCAATAAGGCATCGGAGCGTTTGTTCCTGGTTAAACTCTTGGG
 
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JMSF037M15+           ATACACTAACCCATGCTCGCATGTCAAAATAAGAAGTAATTGACGGATGTTCATAAACTT
                      ____________________________________________________________
consensus             ATACACTAACCCATGCTCGCATGTCAAAATAAGAAGTAATTGACGGATGTTCATAAACTT
 
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JMSF037M15+           TTTGTGCTAAAGTGGTCTTGCCTATTCCTCCCATGCCAACAATTGAAACAACTTGTCTCC
                      ____________________________________________________________
consensus             TTTGTGCTAAAGTGGTCTTGCCTATTCCTCCCATGCCAACAATTGAAACAACTTGTCTCC
 
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JMSF037M15+           CCTTAGTTGATTGTTGTGTGAGCTTATCCAATATCGTGTTGAACGCCCATGGCATCCCAC
                      ____________________________________________________________
consensus             CCTTAGTTGATTGTTGTGTGAGCTTATCCAATATCGTGTTGAACGCCCATGGCATCCCAC
 
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JMSF037M15+           CATTCTACTGTCCAACTTTGAAGCGGTTTTTGAAAATTTTCTCACAATAATGTTCTTGTG
                      ____________________________________________________________
consensus             CATTCTACTGTCCAACTTTGAAGCGGTTTTTGAAAATTTTCTCACAATAATGTTCTTGTG
 
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JMSF037M15+           TGCTAGAACAGGCTGTGATAATCCTCCTCCGTTCTCAAGCAGTAGTCCTCTTCGTTGGAT
                      ____________________________________________________________
consensus             TGCTAGAACAGGCTGTGATAATCCTCCTCCGTTCTCAAGCAGTAGTCCTCTTCGTTGGAT
 
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JMSF037M15+           CCGACCAAGGAGTGAAACATCAGTGATTCTTTCGTTTTGTGATGAAGCCGCCTTTGCAAT
                      ____________________________________________________________
consensus             CCGACCAAGGAGTGAAACATCAGTGATTCTTTCGTTTTGTGATGAAGCCGCCTTTGCAAT
 
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JMSF037M15+           TAGCTGGTATTCAGTTTGAATCCTAATCAACTCATTCCTGTGGTAATCAGTCTGTTTTTC
                      ____________________________________________________________
consensus             TAGCTGGTATTCAGTTTGAATCCTAATCAACTCATTCCTGTGGTAATCAGTCTGTTTTTC
 
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JMSF037M15+           TGCTTCAATGAAGATTTGATGAAGCCTGAGCAGGCAAGATGTTATATGAAGAAGACTATC
                      ____________________________________________________________
consensus             TGCTTCAATGAAGATTTGATGAAGCCTGAGCAGGCAAGATGTTATATGAAGAAGACTATC
 
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JMSF037M15+           CTTTGCTAGATAAATTGTAGTCAACTCCATCTCAATCCTTTCTTCGGCTTTGAACCATAC
JMSF012J24+                               TCAACTCCGTCTCAATCCTTTCTACGGCTTTGAACAATAC
                      ____________________________________________________________
consensus             CTTTGCTAGATAAATTGTAGTCAACTCCGTCTCAATCCTTTCTTCGGCTTTGAACCATAC
 
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JMSF037M15+           ATCTCTGATCTCTGCCTCTAAATCTTTCATCGCCCCCGCATCATCATTGCC         
JMSF012J24+           ATCTCTGATCTCTGCCTCTAAATCTTTCATCGCCCCCGCATTATCATTGCCCACGATCTC
                      ____________________________________________________________
consensus             ATCTCTGATCTCTGCCTCTAAATCTTTCATCGCCCCCGCATTATCATTGCCCACGATCTC
 
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JMSF012J24+           TGACGATTCCTCAAGACTTTCTTGCAGGAAGAGAAGATTTTCATGGAGAGAAACCATCTC
                      ____________________________________________________________
consensus             TGACGATTCCTCAAGACTTTCTTGCAGGAAGAGAAGATTTTCATGGAGAGAAACCATCTC
 
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JMSF012J24+           TTGTTTGTTATCAAGAGGCAAGCGTGGTTGTGATTGCAAGAAATGTTGAGAAAGTGTTTC
                      ____________________________________________________________
consensus             TTGTTTGTTATCAAGAGGCAAGCGTGGTTGTGATTGCAAGAAATGTTGAGAAAGTGTTTC
 
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JMSF012J24+           CATAAGGGAAGTTACAGCAGCGTAAGCCATTTCCGTCTCTCTCTTTGTGGTAAGGTGATC
                      ____________________________________________________________
consensus             CATAAGGGAAGTTACAGCAGCGTAAGCCATTTCCGTCTCTCTCTTTGTGGTAAGGTGATC