| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039B12 | Sequence | 579 | 000650 (7) | ref|XP_009767036.1| | 195 | PREDICTED: uncharacterized protein LOC104218281 [Nicotiana sylvestris] | 589 | 000650 (7) | ref|XP_009767036.1| | 195 | PREDICTED: uncharacterized protein LOC104218281 [Nicotiana sylvestris] |
| JMFN013D15 | Sequence | 553 | 000650 (7) | ref|XP_009767036.1| | 194 | PREDICTED: uncharacterized protein LOC104218281 [Nicotiana sylvestris] | |||||
| JMSF011J19 | Sequence | 330 | 000650 (7) | ref|XP_009767036.1| | 80.9 | PREDICTED: uncharacterized protein LOC104218281 [Nicotiana sylvestris] | 554 | 000650 (7) | ref|XP_009767036.1| | 183 | PREDICTED: uncharacterized protein LOC104218281 [Nicotiana sylvestris] |
| JMSF038D02 | Sequence | 660 | 000650 (7) | ref|XP_009767036.1| | 195 | PREDICTED: uncharacterized protein LOC104218281 [Nicotiana sylvestris] | 614 | 000650 (7) | ref|XP_009767036.1| | 195 | PREDICTED: uncharacterized protein LOC104218281 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF038D02- CATTTA
JMFF039B12+ CATTTA
rJMFF039B12- CATTTA
JMSF038D02+ TTTTTTTTTTAAGCATACAACCAACTTTCAACTGCATATTTCATAATCTTTCTACATTTA
____________________________________________________________
consensus TTTTTTTTTTAAGCATACAACCAACTTTCAACTGCATATTTCATAATCTTTCTACATTTA
. : . : . : . : . : . :
rJMSF038D02- TTACCAACAATCTTTAGCTCAACTTGATTTCTGCAAATTAGATACAAGATTTGATGCAGC
JMFN013D15+ TTACCAACAATCTTTAGCTCAACTTGATTTCTGCAAATTAGATACAAGATTTGATGCAGC
JMFF039B12+ TTACCAACAATCTTTAGCTCAACTTGATTTCTGCAAATTAGATACAAGATTTGATGCAGC
rJMFF039B12- TTACCAACAATCTTTAGCTCAACTTGATTTCTGCAAATTAGATACAAGATTTGATGCAGC
rJMSF011J19- AGATTTGATGCAGC
JMSF038D02+ TTACCAACAATCTTTAGCTCAACTTGATTTCTGCAAATTAGATACAAGATTTGATGCAGC
____________________________________________________________
consensus TTACCAACAATCTTTAGCTCAACTTGATTTCTGCAAATTAGATACAAGATTTGATGCAGC
. : . : . : . : . : . :
rJMSF038D02- AAAGGCTGCAGAGCCACCAAGAACAGAGATGAAAGCTACCAAAACCTGGATACCAATCTG
JMFN013D15+ AAAGGCTGCAGAGCCACCAAGAACAGAGATGAAAGCTACCAAAACCTGGATACCAATCTG
JMFF039B12+ AAAGGCTGCAGAGCCACCAAGAACAGAGATGAAAGCTACCAAAACCTGGATACCAATCTG
rJMFF039B12- AAAGGCTGCAGAGCCACCAAGAACAGAGATGAAAGCTACCAAAACCTGGATACCAATCTG
rJMSF011J19- AAAGGCTGCAGAGCCACCAAGAACAGAGATGAAAGCTACCAAAACCTGGATACCAATCTG
JMSF038D02+ AAAGGCTGCAGAGCCACCAAGAACAGAGATGAAAGCTACCAAAACCTGGATACCAATCTG
____________________________________________________________
consensus AAAGGCTGCAGAGCCACCAAGAACAGAGATGAAAGCTACCAAAACCTGGATACCAATCTG
. : . : . : . : . : . :
rJMSF038D02- CCAAGGGTATTCCTCAGGCACAAAATACACACAAACAGGGCCCAAAGCTAGCAATCCCAG
JMFN013D15+ CCAAGGGTATTCCTCAGGCACAAAATACACACAAACAGGGCCCAAAGCTAGCAATCCCAG
JMFF039B12+ CCAAGGGTATTCCTCAGGCACAAAATACACACAAACAGGGCCCAAAGCTAGCAATCCCAG
rJMFF039B12- CCAAGGGTATTCCTCAGGCACAAAATACACACAAACAGGGCCCAAAGCTAGCAATCCCAG
rJMSF011J19- CCAAGGGTATTCCTCAGGCACAAAATACACACAAACAGGGCCCAAAGCTAGCAATCCCAG
JMSF038D02+ CCAAGGGTATTCCTCAGGCACAAAATACACACAAACAGGGCCCAAAGCTAGCAATCCCAG
____________________________________________________________
consensus CCAAGGGTATTCCTCAGGCACAAAATACACACAAACAGGGCCCAAAGCTAGCAATCCCAG
. : . : . : . : . : . :
rJMSF038D02- GCTGAGGCTGAACAGACCTGAAGGGGTTCCAGGGTCAGTAGCTGCTGATAGAATTCCCAG
JMFN013D15+ GCTGAGGCTGAACAGACCTGAAGGGGTTCCAGGGTCAGTAGCTGCTGATAGAATTCCCAG
JMFF039B12+ GCTGAGGCTGAACAGACCTGAAGGGGTTCCAGGGTCAGTAGCTGCTGATAGAATTCCCAG
rJMFF039B12- GCTGAGGCTGAACAGACCTGAAGGGGTTCCAGGGTCAGTAGCTGCTGATAGAATTCCCAG
rJMSF011J19- GCTGAGGCTGAACAGACCTGAAGGGGTTCCAGGGTCAGTAGCTGCTGATAGAATTCCCAG
JMSF038D02+ GCTGAGGCTGAACAGACCTGAAGGGGTTCCAGGGTCAGTAGCTGCTGATAGAATTCCCAG
____________________________________________________________
consensus GCTGAGGCTGAACAGACCTGAAGGGGTTCCAGGGTCAGTAGCTGCTGATAGAATTCCCAG
. : . : . : . : . : . :
rJMSF038D02- CTCTTCTGCCTTGGATAGCACCCCAAGTCTCTCAATGGCGGATAGCGAGAACCCAAAATT
JMFN013D15+ CTCTTCTGCCTTGGATAGCACCCCAAGTCTCTCAATGGCGGATAGCGAGAACCCAAAATT
JMFF039B12+ CTCTTCTGCCTTGGATAGCACCCCAAGTCTCTCAATGGCGGATAGCGAGAACCCAAAATT
rJMFF039B12- CTCTTCTGCCTTGGATAGCACCCCAAGTCTCTCAATGGCGGATAGCGAGAACCCAAAATT
rJMSF011J19- CTCTTCTGCCTTGGATAGCACCCCAAGTCTCTCAATGGCGGATAGCGAGAACCCAAAATT
JMSF038D02+ CTCTTCTGCCTTGGATAGCACCCCAAGTCTCTCAATGGCGGATAGCGAGAACCCAAAATT
JMSF011J19+ CTCAATGGCGGATAGCGAGAACCCAAAATT
____________________________________________________________
consensus CTCTTCTGCCTTGGATAGCACCCCAAGTCTCTCAATGGCGGATAGCGAGAACCCAAAATT
. : . : . : . : . : . :
rJMSF038D02- CTCGGCCGCTGACAATAGCCCTGCTTTCTCTGCCTTGGTTAGCAGCCTCAGCTGCTCCAC
JMFN013D15+ CTCGGCCGCTGACAATAGCCCTGCTTTCTCTGCCTTGGTTAGCAGCCTCAGCTGCTCCAC
JMFF039B12+ CTCGGCCGCTGACAATAGCCCTGCTTTCTCTGCCTTGGTTAGCAGCCTCAGCTGCTCCAC
rJMFF039B12- CTCGGCCGCTGACAATAGCCCTGCTTTCTCTGCCTTGGTTAGCAGCCTCAGCTGCTCCAC
rJMSF011J19- CTCGGCCGCTGACAATAGCCCTGCTTTCTCTGCCTTGGTTAGCAGCCTCAGCTGCTCCAC
JMSF038D02+ CTCGGCCGCTGACAATAGCCCTGCTTTCTCTGCCTTGGTTAGCAGCCTCAGCTGCTCCAC
JMSF011J19+ CTCGGCCGCTGACAATAGCCCTGCTTTCTCTGCCTTGGTTAGCAGCCTCAGCTGCTCCAC
____________________________________________________________
consensus CTCGGCCGCTGACAATAGCCCTGCTTTCTCTGCCTTGGTTAGCAGCCTCAGCTGCTCCAC
. : . : . : . : . : . :
rJMSF038D02- CCTTGTGAGTAGCTTCACTGTTCCTGTTCCTGTTCCTGTTCCACTCTTTTTGGAGCTAAC
JMFN013D15+ CCTTGTGAGTAGCTTTACTGTTCCTGTTCCTGTTCCTGTTCCACTCTTTTTGGAGCTAAC
JMFF039B12+ CCTTGTGAGTAGCTTCACTGTTCCTGTTCCTGTTCCTGTTCCACTCTTTTTGGAGCTAAC
rJMFF039B12- CCTTGTGAGTAGCTTCACTGTTCCTGTTCCTGTTCCTGTTCCACTCTTTTTGGAGCTAAC
rJMSF011J19- CCTTGTGAGTAGCTTCACTGTTCCTGTTCCTGTTCCTGTTCCACTCTTTTTGGAGCTAAC
JMSF038D02+ CCTTGTGAGTAGCTTCACTGTTCCTGTTCCTGTTCCTGTTCCACTCTTTTTGGAGCTAAC
JMSF011J19+ CCTTGTGAGTAGCTTCACTGTTCCTGTTCCTGTTCCTGTTCCACTCTTTTTGGAGCTAAC
____________________________________________________________
consensus CCTTGTGAGTAGCTTCACTGTTCCTGTTCCTGTTCCTGTTCCACTCTTTTTGGAGCTAAC
. : . : . : . : . : . :
rJMSF038D02- AGTTGTTGTGGCCGAGGGGATTGGCTTCTGGGTAGCCATGGATCGAATGAGAAGTGGTGA
JMFN013D15+ AGTTGTTGTGGCCGAGGGGATTGGCTTCTGGGTAGCCATGGATCGAATGAGAAGTGGTGA
JMFF039B12+ AGTTGTTGTGGCCGAGGGGATTGGCTTCTGGGTAGCCATGGATCGAATGAGAAGTGGTGA
rJMFF039B12- AGTTGTTGTGGCCGAGGGGATTGGCTTCTGGGTAGCCATGGATCGAATGAGAAGTGGTGA
rJMSF011J19- AGTTGTTGTGGCCGAGGGGATTGGCTTCTGGGTAGCCATGGATCGAATGAGAAGTGGTGA
JMSF038D02+ AGTTGTTGTGGCCGAGGGGATTGGCTTCTGGGTAGCCATGGATCGAATGAGAAGTGGTGA
JMSF011J19+ AGTTGTTGTGGCCGAGGGGATTGGCTTCTGGGTAGCCATGGATCGAATGAGAAGTGGTGA
____________________________________________________________
consensus AGTTGTTGTGGCCGAGGGGATTGGCTTCTGGGTAGCCATGGATCGAATGAGAAGTGGTGA
. : . : . : . : . : . :
rJMSF038D02- GTTTGATGCAGAGACACATGTTTTTGCCATCATCATCATATTCCAATCTCTCCTCTCCGG
JMFN013D15+ GTTTGATGCAGAGACACATGTTTTTGCCATCATCATCATATTCCAATCTCTCCTCTCCGG
JMFF039B12+ GTTTGATGCAGAGACACATGTTTTTGCCATCATCATCATATTCCAATCTCTCCTCTCCGG
rJMFF039B12- GTTTGATGCAGAGACACATGTTTTTGCCATCATCATCATATTCCAATCTCTCCTCTCCGG
rJMSF011J19- GTTTGATGCAGAGACACATGTTTTTGCCATCATCATCATATTCCAATCTCTCCTCTCCGG
JMSF038D02+ GTTTGATGCAGAGACACATGTTTTTGCCATCATCATCATATTCCAATCTCTCCTCTCCGG
JMSF011J19+ GTTTGATGCAGAGACACATGTTTTTGCCATCATCATCATATTCCAATCTCTCCTCTCCGG
____________________________________________________________
consensus GTTTGATGCAGAGACACATGTTTTTGCCATCATCATCATATTCCAATCTCTCCTCTCCGG
. : . : . : . : . : . :
rJMSF038D02- TCTGCACTATTTGCTGCTTGGTTTTGCCCTTAAGGATCTCACACAAACACATGGC
JMFN013D15+ TCTGCA
JMFF039B12+ TCTGCACTATTTGCTGCTTGGTTTTGCCCTT
rJMFF039B12- TCTGCACTATTTGCTGCTTGGTTTTGCCCTT
rJMSF011J19- TCTGCACTATTTGCTGCTTGGTTTTGCCCTTAAGGATCTCACACAAACACATGGC
JMSF038D02+ TCTGCACTATTTGCTGCTTGGTTTTGCCCTTAAGGATCTCACACAAACACATGGC
JMSF011J19+ TCTGCACTATTTGCTGCTTGGTTTTGCCCTTAAGGATCTCACACAAACACATGGCCGATC
____________________________________________________________
consensus TCTGCACTATTTGCTGCTTGGTTTTGCCCTTAAGGATCTCACACAAACACATGGCCGATC