Contig 000641:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP003C06Sequence431000641 (5)
JMSF010F23Sequence350000641 (5)dbj|BAM28759.1|3e-15ROX1 homologue [Nicotiana tabacum]708000641 (5)ref|XP_011086042.1|73.9PREDICTED: LOW QUALITY PROTEIN: protein E6-like [Sesamum indicum]
JMSF014G19Sequence271000641 (5)dbj|BAM28759.1|1e-08ROX1 homologue [Nicotiana tabacum]752000641 (5)ref|XP_011086042.1|83.6PREDICTED: LOW QUALITY PROTEIN: protein E6-like [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF010F23- CATTAAATCTTAAAGGACGATCTATGGTGATATTACAATGGTGAGCAGAACA
rJMSF014G19- GAGCAGAACA
                      ____________________________________________________________
consensus CATTAAATCTTAAAGGACGATCTATGGTGATATTACAATGGTGAGCAGAACA
 
. : . : . : . : . : . :
rJMSF010F23- TATTCATCGGCAATAAATTAAACACAACCCATAAAAACCTAGAATTTAGTCAAAGTATAA
rJMSF014G19- TATTCATCGGCAATAAATTAAACACAACCCATAAAAACCTAGAATTTAGTCAAAGTATAA
                      ____________________________________________________________
consensus TATTCATCGGCAATAAATTAAACACAACCCATAAAAACCTAGAATTTAGTCAAAGTATAA
 
. : . : . : . : . : . :
rJMSF010F23- CTACTTAAAACCATGGTAATACTCAACAAGATCGACAATCTTAATCACTTATACCCAACA
JMCP003C06+ CTCAACAAGATCGACAATCTTAATCACTTATACCCAACA
rJMSF014G19- CTACTTAAAACCATGGTAATACTCAACAAGATCGACAATCTTAATCACTTATACCCAACA
                      ____________________________________________________________
consensus CTACTTAAAACCATGGTAATACTCAACAAGATCGACAATCTTAATCACTTATACCCAACA
 
. : . : . : . : . : . :
rJMSF010F23- GTTGCGAACATG-AAGACAAATAATAACATTTATATGTTCTGCAAATTAAAGAGCTAGGA
JMCP003C06+ GTTGCGAACATGAAAGATAAATAATAACATTTATATGTTCTGCAAATTAAAGAGCTAGGA
rJMSF014G19- GTTGCGAACATGAAAGACAAATAATAACATTTATATGTTCTGCAAATTAAAGAGCTAGGA
                      ____________________________________________________________
consensus GTTGCGAACATGAAAGACAAATAATAACATTTATATGTTCTGCAAATTAAAGAGCTAGGA
 
. : . : . : . : . : . :
rJMSF010F23- AGTGTTCCTCAGGGCAAATCATCATCATCTTCATCTTCGAACTCCTCCTCATTTTGGTAG
JMCP003C06+ AGTGTTCCTCAGGGCAAATCATCATCATCTTCATCTTCGAACTCCTCCTCATTTTGGTAG
rJMSF014G19- AGTGTTCCTCAGGGCAAATCATCATCATCTTCATCTTCGAACTCCTCCTCATTTTGGTAG
                      ____________________________________________________________
consensus AGTGTTCCTCAGGGCAAATCATCATCATCTTCATCTTCGAACTCCTCCTCATTTTGGTAG
 
. : . : . : . : . : . :
rJMSF010F23- CTGTTCTCCATGAAATTGTTGTTGTTTTCGTTGAAATACCTGCTGTTTCCAAACTGGTTT
JMCP003C06+ CTGTTCTCCATGAAATTGTTGTTGTTTTCGTTGAAATACCTGCTGTTTCCAAACTGGTTT
rJMSF014G19- CTGTTCTCCATGAAATTGTTGTTGTTTTCGTTGAAATACCTGCTGTTTCCAAACTGGTTT
                      ____________________________________________________________
consensus CTGTTCTCCATGAAATTGTTGTTGTTTTCGTTGAAATACCTGCTGTTTCCAAACTGGTTT
 
. : . : . : . : . : . :
rJMSF010F23- CTTGAATTGTCCAATGGGTTTCTGGGGAACCTCTCGCCGTTGTTATAATATCTCCCACCG
JMCP003C06+ CTTGAATTGTCCAATGGGTTTCTGGGGAACCTCTCGCCGTTGTTATAATATCACCCACCG
rJMSF014G19- CTTGAATTGTCCAATGGGTTTCTGGGGAACCTCTCGCCGTTGTTATAATATCTCCCACCG
                      ____________________________________________________________
consensus CTTGAATTGTCCAATGGGTTTCTGGGGAACCTCTCGCCGTTGTTATAATATCTCCCACCG
 
. : . : . : . : . : . :
rJMSF010F23- TCCAAGAATCTGGTGTCACTCATCCCCTGTTTCTTGAATCCTCCATTAGCATCGCCGCCG
JMCP003C06+ TCCAAGAATCTGGTGTCACTCATCCCCTGTTTCTTGAATCCTCCATTAGCATCGCCGCCG
rJMSF014G19- TCCAAGAATCTGGTGTCACTCATCCCCTGTTTCTTGAATCCTCCATTAGCATCGCCGCCG
                      ____________________________________________________________
consensus TCCAAGAATCTGGTGTCACTCATCCCCTGTTTCTTGAATCCTCCATTAGCATCGCCGCCG
 
. : . : . : . : . : . :
rJMSF010F23- TTGTACTGATCATTCCGGTTGCCGGTGGTGGTGGTGGCGGAGGGGTACCTCTCCTTCTGG
JMCP003C06+ TTGTACTGATCATTCCGGTTGCCGGTGGTGGTGGTGGCGGAGGGGTACCTCTCCTTCTGG
rJMSF014G19- TTGTACTGATCATTCCGGTTGCCGGTGGTGGTGGTGGCGGAGGGGTACCTCTCCTTCTGG
                      ____________________________________________________________
consensus TTGTACTGATCATTCCGGTTGCCGGTGGTGGTGGTGGCGGAGGGGTACCTCTCCTTCTGG
 
. : . : . : . : . : . :
rJMSF010F23- TTGTTGAAGTAATTCTCGCCGCCGTTGGTGTAGCCGCTCTGCATGAATGTGTCACTGGGC
JMCP003C06+ TTGTTGAAGTAATTCTCGCCGCCGTTGGTGTA
rJMSF014G19- TTGTTGAAGTAATTCTCGCCGCCGTTGGTGTAGCCGCTCTGCATGAATGTGTCACTGGGC
                      ____________________________________________________________
consensus TTGTTGAAGTAATTCTCGCCGCCGTTGGTGTAGCCGCTCTGCATGAATGTGTCACTGGGC
 
. : . : . : . : . : . :
rJMSF010F23- ATGGATGTTTTCTGCTTGCCGGCGCCGGCGCCGGCGGAGGTATCCTCCGGGACGGTGACG
rJMSF014G19- ATGGATGTTTTCTGCTTGCCGGCGCCGGCGCCGGCGGAGGTATCCTCCGGGACGGTGACG
                      ____________________________________________________________
consensus ATGGATGTTTTCTGCTTGCCGGCGCCGGCGCCGGCGGAGGTATCCTCCGGGACGGTGACG
 
. : . : . : . : . : . :
rJMSF010F23- TAGGAAACGGGGCTGTAGTTCTTGGGGAGGTATTTCTTGTTGGGAATATTCTCCTCC
rJMSF014G19- TACGAAACGGGGCTGTAGTTCTTGGGGAGGTATTTCTTGTTGGGAATATTCTCCTCCCAG
JMSF010F23+ GGCTGTAGTTCTTGGGGAGGTATTTCTTGTTGGGAATATTCTCCTCCCAG
                      ____________________________________________________________
consensus TAGGAAACGGGGCTGTAGTTCTTGGGGAGGTATTTCTTGTTGGGAATATTCTCCTCCCAG
 
. : . : . : . : . : . :
rJMSF014G19- GAAGGGAGGTTTTTGGCGGCGGCGGTGGTGGATTCACGGCCGTAAAGACCGTAACCGCCG
JMSF014G19+ GGATTCACGNCCGTAAAGACCGTAGCCGCCG
JMSF010F23+ GAAGGGAGGTTTTTGGCGGCGGCGGTGGTGGATTCACGGCCGTAAAGACCGTAGCCGCCG
                      ____________________________________________________________
consensus GAAGGGAGGTTTTTGGCGGCGGCGGTGGTGGATTCACGGCCGTAAAGACCGTAGCCGCCG
 
. : . : . : . : . : . :
rJMSF014G19- TTTTCAGATTCCTGGACGAA
JMSF014G19+ TTTTCAGATTCCTGGACGAAGTTGGGCTGTTGTTCTTGGGGGTTTAATGTTGTCTGCGCC
JMSF010F23+ TTTTCAGATTCCTGGACGAAGTTGGGCTGTTGTTCTTGGGGGTTTAATGTTGTCTGCGCC
                      ____________________________________________________________
consensus TTTTCAGATTCCTGGACGAAGTTGGGCTGTTGTTCTTGGGGGTTTAATGTTGTCTGCGCC
 
. : . : . : . : . : . :
JMSF014G19+ TTGATAACAACGTTGTTTCTGGGAATTTTGCTGAAGAACTGACTTTCTCTTGCATGGAGA
JMSF010F23+ TTGATAACAACGTTGTTTCTGGGAATTTTGCTGAAGAACTGACTTTCTCTTGCATGGTGA
                      ____________________________________________________________
consensus TTGATAACAACGTTGTTTCTGGGAATTTTGCTGAAGAACTGACTTTCTCTTGCATGGTGA
 
. : . : . : . : . : . :
JMSF014G19+ TGAAGTGGGGAAAGAAGGGAGAAGAGGAAGAAGATTGAGAAATGAGTGACAATGGAAGCC
JMSF010F23+ TGAAGTGGGGAAAGAAGGGAGAAGAGGAAGAAGATTGAGAAATGAGTGACAATGGAAGCC
                      ____________________________________________________________
consensus TGAAGTGGGGAAAGAAGGGAGAAGAGGAAGAAGATTGAGAAATGAGTGACAATGGAAGCC
 
. : . : . : . : . : . :
JMSF014G19+ ATGGAAGGAGAGAGACGACAGAGAAACAGTGATACGATGATGTTTGGTTGTGTTGTGG
JMSF010F23+ ATGGAAGGAGAGAGACGACAGAGAAACAGTGATACGATGATGTTTGGTTGTGTTGTGGTA
                      ____________________________________________________________
consensus ATGGAAGGAGAGAGACGACAGAGAAACAGTGATACGATGATGTTTGGTTGTGTTGTGGTA