| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS116F09 | Sequence | 558 | 000623 (7) | ref|XP_004251160.1| | 1e-87 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Solanum lycoper | |||||
| JMSF001N07 | Sequence | 235 | 000623 (7) | ref|XP_006340213.1| | 1e-06 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l | 754 | 004271 (6) | ref|XP_009799931.1| | 2e-106 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Nicotiana sylve |
| JMSF004D03 | Sequence | 337 | 000623 (7) | ref|XP_004251160.1| | 4e-31 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Solanum lycoper | 181 | 004271 (6) | ref|XP_004145754.1| | 3e-17 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l |
| JMSF008G13 | Sequence | 423 | 000623 (7) | ref|XP_004251160.1| | 2e-49 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Solanum lycoper | 771 | 004271 (6) | ref|XP_009799931.1| | 2e-106 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Nicotiana sylve |
| JMSF012N23 | Sequence | 233 | 000623 (7) | ref|XP_006340213.1| | 1e-06 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l | 766 | 004271 (6) | ref|XP_009799931.1| | 1e-109 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Nicotiana sylve |
| JMSF025C17 | Sequence | 661 | 000623 (7) | ref|XP_004251160.1| | 6e-102 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Solanum lycoper | 772 | 004271 (6) | ref|XP_009799931.1| | 1e-107 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Nicotiana sylve |
| JMSF040J13 | Sequence | 658 | 000623 (7) | ref|XP_004251160.1| | 3e-101 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Solanum lycoper | |||||
This contig is upended
. : . : . : . : . : . :
JMSF025C17+ T
____________________________________________________________
consensus T
. : . : . : . : . : . :
JMSF025C17+ TTCCAGCAGAGATTGAAGCAATTGCTTTAATATCATCACGACCTTTAACAGGCCTAGCTT
JMFS116F09+ AGCTT
JMSF040J13+ ATTGAAGCAATTGCTTTAATATCATCACGACCTTTAACAGGCCTAGCTT
____________________________________________________________
consensus TTCCAGCAGAGATTGAAGCAATTGCTTTAATATCATCACGACCTTTAACAGGCCTAGCTT
. : . : . : . : . : . :
JMSF025C17+ TCTTTTCAAGCTCTTCCACCAAAGCATGTACAGTCTTGTCAATACCCTTCTTTATGGACA
JMFS116F09+ TCTTTTCAAGCTCTTCCACCAAAGCATGTACAGTCTTGTCAATACCCTTCTTTATGGACA
JMSF040J13+ TCTTTTCAAGCTCTTCCACCAAAGCATGTACAGTCTTGTCAATACCCTTCTTTATGGACA
____________________________________________________________
consensus TCTTTTCAAGCTCTTCCACCAAAGCATGTACAGTCTTGTCAATACCCTTCTTTATGGACA
. : . : . : . : . : . :
JMSF025C17+ CTGGATTCGCACCAGATGTAACACTCAACAAACCTAGTTTAATTATTTCACGAGCAAGAA
JMFS116F09+ CTGGATTCGCACCAGATGTAACACTCAACAAACCTAGTTTAATTATTTCACGAGCAAGAA
JMSF040J13+ CTGGATTCGCACCAGATGTAACACTCAACAAACCTAGTTTAATTATTTCACGAGCAAGAA
____________________________________________________________
consensus CTGGATTCGCACCAGATGTAACACTCAACAAACCTAGTTTAATTATTTCACGAGCAAGAA
. : . : . : . : . : . :
JMSF025C17+ CTGATGCAGTTGTCGTCCCATCACCAGCAGAATCATTGGTTTTGCTTGCAACCTCCCTAA
JMFS116F09+ CTGATGCAGTTGTCGTCCCATCACCAGCAGAATCATTGGTTTTGCTTGCAACCTCCCTAA
JMSF040J13+ CTGATGCAGTTGTCGTCCCATCACCAGCAGAATCATTGGTTTTGCTTGCAACCTCCCTAA
JMSF008G13+ TAA
____________________________________________________________
consensus CTGATGCAGTTGTCGTCCCATCACCAGCAGAATCATTGGTTTTGCTTGCAACCTCCCTAA
. : . : . : . : . : . :
JMSF025C17+ TGAGGGCAGCACCAGCATTTTCCATAGCATCAGCAAGTTCAATAGCACGAGCAATTGTTA
JMFS116F09+ TGAGGGCAGCACCAGCATTTTCCATAGCATCAGCAAGTTCAATAGCACGAGCAATTGTTA
JMSF040J13+ TGAGGGCAGCACCAGCATTTTCCATAGCATCAGCAAGTTCAATAGCACGAGCAATTGTTA
JMSF008G13+ TGAGGGCAGCACCAGCATTTTCCATAGCATCAGCAAGTTCAATAGCACGAGCAATTGTTA
____________________________________________________________
consensus TGAGGGCAGCACCAGCATTTTCCATAGCATCAGCAAGTTCAATAGCACGAGCAATTGTTA
. : . : . : . : . : . :
JMSF025C17+ CTCCATCATTAACCACTTTTGGGGTTCCATATTCATCCAACACAACATTCCTCCCCCTGG
JMFS116F09+ CTCCATCATTAACCACTTTTGGGGTTCCATATTCATCCAACACAACATTCCTCCCCCTGG
JMSF040J13+ CTCCATCATTAACCACTTTTGGGGTTCCATATTCATCCAACACAACATTCCTCCCCCTGG
JMSF004D03+ GGTTCCATATTCATCCAACACAACATTCCTCCCCCTGG
JMSF008G13+ CTCCATCATTAACCACTTTTGGGGTTCCATATTCATCCAACACAACATTCCTCCCCCTGG
____________________________________________________________
consensus CTCCATCATTAACCACTTTTGGGGTTCCATATTCATCCAACACAACATTCCTCCCCCTGG
. : . : . : . : . : . :
JMSF025C17+ GGCCAAGCGTGAGGCCGACGGCATCGGCGAGCTTATCAATGCCGGCCTGAAGGGCAGTCC
JMFS116F09+ GGCCAAGCGTGAGGCCGACGGCATCGGCGAGCTTATCAATGCCGGCCTGAAGGGCAGTCC
JMSF040J13+ GGCCAAGCGTGAGGCCGACGGCATCGGCGAGCTTATCAATGCCGGCCTGAAGGGCAGTCC
JMSF004D03+ GGCCAAGCGTGAGGCCGACGGCATCGGCGAGCTTATCAATGCCGGCCTGAAGGGCAGTCC
JMSF008G13+ GGCCAAGCGTGAGGCCGACGGCATCGGCGAGCTTATCAATGCCGGCCTGAAGGGCAGTCC
____________________________________________________________
consensus GGCCAAGCGTGAGGCCGACGGCATCGGCGAGCTTATCAATGCCGGCCTGAAGGGCAGTCC
. : . : . : . : . : . :
JMSF025C17+ TGGATTTCTGATCAAATGCTATTTCCTTAGCATTCGCCTTCACCACAAACCGGCTCTTGG
JMFS116F09+ TGGATTTCTGATCAAATGCTATTTCCTTAGCATTCGCCTTCACCACAAACCGGCTCTTGG
JMSF040J13+ TGGATTTCTGATCAAATGCTATTTCCTTAGCATTCGCCTTCACCACAAACCGGCTCTTGG
JMSF004D03+ TGGATTTCTGATCAAATGCTATTTCCTTAGCATTCGCCTTCACCACAAACCGGCTCTTGG
JMSF012N23+ CTGATCAAATGCTATTTCCTTAGCATTCGCCTTCACCACAAACCGGCTCTTGG
JMSF001N07+ TTCTGATCAAATGCTATTTCCTTAGCATTCGCCTTCACCACAAACCGGCTCTTGG
JMSF008G13+ TGGATTTCTGATCAAATGCTATTTCCTTAGCATTCGCCTTCACCACAAACCGGCTCTTGG
____________________________________________________________
consensus TGGATTTCTGATCAAATGCTATTTCCTTAGCATTCGCCTTCACCACAAACCGGCTCTTGG
. : . : . : . : . : . :
JMSF025C17+ AGCTCGATGTCTTGCCGTTGTAATTCCTCCCGTTCAACTGGTAAGCCCTCCTATTCCTCA
JMFS116F09+ AGCTCGATGTCTTGCCGTTGTAATTCCTCCCGTTCAACTGGTAAGCCCTCCTATTCCTAA
JMSF040J13+ AGCTCGATGTCTTGCCGTTGTAATTCCTCCCGTTCAACTGGTAAGCCCTCCTATTCCTCA
JMSF004D03+ AGCTCGATGTCTTGCCGTTGTAATTCCTCCCGTTCAACTGGTAAGCCCTCCTATTCCTCA
JMSF012N23+ AGCTCGATGTCTTGCCGTTGTAATTCCTCCCGTTCAACTGGTAAGCCCTCCTATTCCTCA
JMSF001N07+ AGCTCGATGTCTTGCCGTTGTAATTCCTCCCGTTCAACTGGTAAGCCCTCCTATTCCTCA
JMSF008G13+ AGCTCGATGTCTTGCCGTTGTAATTCCTCCCGTTCAACTGGTAAGCCCTCCTATTCCTCA
____________________________________________________________
consensus AGCTCGATGTCTTGCCGTTGTAATTCCTCCCGTTCAACTGGTAAGCCCTCCTATTCCTCA
. : . : . : . : . : . :
JMSF025C17+ ACCCGCCCTGTTTGGAAGAAGAAGAAGAAGAGAGGATTGAGGCAGTTGAGAAAGCATTTG
JMFS116F09+ ACCCGCCCTG
JMSF040J13+ ACCCGCCCTGTTTGGAAGAAGAAGAAGAAGAGAGGATTGAGGCAGTTGAGAAAGCATTTG
JMSF004D03+ ACCCGCCCTGTTTGGAAGAAGAAGAAGAAGAGAGGATTGAGGCAGTTGAGAAAGCATTTG
JMSF012N23+ ACCCGCCCTGTTTGGAAGAAGAAGAAGAAGAGAGGATTGAGGCAGTTGAGAAAGCATTTG
JMSF001N07+ ACCCGCCCTGTTTGGAAGAAGAAGAAGAAGAGAGGATTGAGGCAGTTGAGAAAGCATTTG
JMSF008G13+ ACCCGCCCTGTTTGGAAGAAGAAGAAGAAGAGAGGATTGAGGCAGTTGAGAAAGCATTTG
____________________________________________________________
consensus ACCCGCCCTGTTTGGAAGAAGAAGAAGAAGAGAGGATTGAGGCAGTTGAGAAAGCATTTG
. : . : . : . : . : . :
JMSF025C17+ CAGATGCCATTTCAAAGGAGAATGCTGTTGTGGATAACAGAAATAGTGAGGGGTTTTGC
JMSF040J13+ CAGATGCCATTTCAAAGGAGAATGCTGTTGTGGATAACAGAAATAGTGAGGGGTTTTGC
JMSF004D03+ CAGATGCCATTTCAAAGGAGAATGCTGTTGTGGATAACAGAAATAGTGAGGGGTTTTGC
JMSF012N23+ CAGATGCCATTTCAAAGGAGAATGCTGTTGTGGATAACAGAAATAGTGAGGGGTTTTG
JMSF001N07+ CAGATGCCATTTCAAAGGAGAATGCTGTTGTGGATAACAGAAATAGTGAGGGGTTT
JMSF008G13+ CAGATGCCATTTCAAAGGAGAATGCTGTTGTGGATAACAGAAATAGTGAGGGGTTTTGCC
____________________________________________________________
consensus CAGATGCCATTTCAAAGGAGAATGCTGTTGTGGATAACAGAAATAGTGAGGGGTTTTGCC