| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008B23 | Sequence | 276 | 000616 (4) | 781 | 012611 (4) | ref|XP_006361377.1| | 3e-83 | PREDICTED: putative CCA tRNA nucleotidyltransferase 2-like [Solanum tuberosum] | |||
| JMSF022H01 | Sequence | 117 | 000616 (4) | 669 | 012611 (4) | ref|XP_004253361.2| | 1e-49 | PREDICTED: putative CCA tRNA nucleotidyltransferase 2 [Solanum lycopersicum] | |||
| JMSF023J10 | Sequence | 692 | 000616 (4) | ref|XP_011096868.1| | 3e-102 | PREDICTED: putative CCA tRNA nucleotidyltransferase 2 [Sesamum indicum] | 774 | 012611 (4) | ref|XP_006361377.1| | 3e-85 | PREDICTED: putative CCA tRNA nucleotidyltransferase 2-like [Solanum tuberosum] |
| JMSF035O14 | Sequence | 630 | 000616 (4) | ref|XP_011096868.1| | 2e-84 | PREDICTED: putative CCA tRNA nucleotidyltransferase 2 [Sesamum indicum] | 709 | 012611 (4) | ref|XP_006361377.1| | 9e-71 | PREDICTED: putative CCA tRNA nucleotidyltransferase 2-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF023J10+ TTCAACCGAACTTGAGTTAATATTGTAAAATAAGCTGTTAATGGTTAA
____________________________________________________________
consensus TTCAACCGAACTTGAGTTAATATTGTAAAATAAGCTGTTAATGGTTAA
. : . : . : . : . : . :
JMSF023J10+ GTCCCTGCGATATGCATCCTCTTCTGCAGTGCCAAATCTCATTGTTGGAATACGACTACT
JMSF035O14+ TCTGCAGTGCCAAATCTCATTGTTGGAATACGACTACT
____________________________________________________________
consensus GTCCCTGCGATATGCATCCTCTTCTGCAGTGCCAAATCTCATTGTTGGAATACGACTACT
. : . : . : . : . : . :
JMSF023J10+ TTCACTGTAATCTTCTGCTCGCAAGTTAACAAAATCAACCCATACATCACAAAGGCGCAT
JMSF035O14+ TTCACTGTAATCTTCTGCTCGCAAGTTAACAAAATCAACCCATACATCACAAAGGCGCAT
____________________________________________________________
consensus TTCACTGTAATCTTCTGCTCGCAAGTTAACAAAATCAACCCATACATCACAAAGGCGCAT
. : . : . : . : . : . :
JMSF023J10+ CCTTGCTGTTTCCAAGTGTTTTGACTGATCAGGATTGCACTGGATGACACCTATTCCTTG
JMSF035O14+ CCTTGCTGTTTCCAAGTGTTTTGACTGATCAGGATTGCACTGGATGACACCTATTCCTTG
____________________________________________________________
consensus CCTTGCTGTTTCCAAGTGTTTTGACTGATCAGGATTGCACTGGATGACACCTATTCCTTG
. : . : . : . : . : . :
JMSF023J10+ GGTTTCTTCCCCAGTAGATGATAAGTACTCATTGACCTTCTCACAGAATTCTCTTCCTAG
JMSF035O14+ GGTTTCTTCCCCAGTAGATGATAAGTACTCATTGACCTTCTCACAGAATTCTCTTCCTAG
____________________________________________________________
consensus GGTTTCTTCCCCAGTAGATGATAAGTACTCATTGACCTTCTCACAGAATTCTCTTCCTAG
. : . : . : . : . : . :
JMSF023J10+ CATGTTATCAAGTGCAATATCTATATCACAGCATTCTTTACCAAGAAGCTTATCGCGAAC
JMSF035O14+ CATGTTATCAAGTGCAATATCTATATCACAGCATTCTTTACCAAGAAGCTTATCGCGAAC
____________________________________________________________
consensus CATGTTATCAAGTGCAATATCTATATCACAGCATTCTTTACCAAGAAGCTTATCGCGAAC
. : . : . : . : . : . :
JMSF023J10+ CCATCCACCGGCGACGCGGAGCTGCGTCTGGAGATTAAAGTGGCGCAGGACTTGAAGAAG
JMSF035O14+ CCATCCACCGGCGACGCGGAGCTGCGTCTGGAGATTAAAGTGGCGCAGGACTTGAAGAAG
____________________________________________________________
consensus CCATCCACCGGCGACGCGGAGCTGCGTCTGGAGATTAAAGTGGCGCAGGACTTGAAGAAG
. : . : . : . : . : . :
JMSF023J10+ GCGGTCAAAAATCTGCTTCTCCTTGGCTGTCAAGTCGATGTGGTCTTTCACATGAACTAG
JMSF035O14+ GCGGTCAAAAATCTGCTTCTCCTTGGCTGTCAAGTCGATGTGGTCTTTCACATGAACTAG
JMSF008B23+ GGCTGTCAAGTCGATGTGGTCTTTCACATGAACTAG
____________________________________________________________
consensus GCGGTCAAAAATCTGCTTCTCCTTGGCTGTCAAGTCGATGTGGTCTTTCACATGAACTAG
. : . : . : . : . : . :
JMSF023J10+ CGCAGGAGACGGGTCGGATTCCGCCATACTTGGCCCGCTGCGAAACCTCCGGGGAGGAAT
JMSF035O14+ CGCAGGAGACGGGTCGGATTCCGCCATACTTGGCCCGCTGCGAAACCTCCGGGGAGGAAT
JMSF022H01+ TGGCCCGCTGCGAAACCTCCGGGGAGGAAN
JMSF008B23+ CGCAGGAGACGGGTCGGATTCCGCCATACTTGGCCCGCTGCGAAACCTCCGGGGAGGAAT
____________________________________________________________
consensus CGCAGGAGACGGGTCGGATTCCGCCATACTTGGCCCGCTGCGAAACCTCCGGGGAGGAAT
. : . : . : . : . : . :
JMSF023J10+ GTAGGAGCTGTGAGATATAGAGTAGTTGCGGCACTTGAATTGTATAGTCTGAAGTTTTGG
JMSF035O14+ GTAGGAGCTGTGAGATATAGAGTAGTTGCGGCACTTGAATTGTATAGTCTGAAGTTTTGG
JMSF022H01+ GTAGGAGCTNTGAGATATAGAGTAGTTGCGGCACTNGAATNGTATAGTCTGAAGTTTTGG
JMSF008B23+ GTAGGAGCTGTGAGATATAGAGTAGTTGCGGCACTTGAATTGTATAGTCTGAAGTTTTGG
____________________________________________________________
consensus GTAGGAGCTGTGAGATATAGAGTAGTTGCGGCACTTGAATTGTATAGTCTGAAGTTTTGG
. : . : . : . : . : . :
JMSF023J10+ GAGAGGTGAAAGGCGAGAAGAGTTGCGTGATGAATGGAAGAAGAGGCGGTGAGTGTAGTG
JMSF035O14+ GAGAGGTGAAAGGCGAGAAGAGTTGCGTGATGAATGGAAGAAGAGGCGGTGAGTGTAGTG
JMSF022H01+ GAGAGGNGAAAGGCGAGAAGAGTT
JMSF008B23+ GAGAGGTGAAAGGCGAGAAGAGTTGCGTGATGAATGGAAGAAGAGGCGGTGAGTGTAGTG
____________________________________________________________
consensus GAGAGGTGAAAGGCGAGAAGAGTTGCGTGATGAATGGAAGAAGAGGCGGTGAGTGTAGTG
. : . : . : . : . : . :
JMSF023J10+ GTTCAAAGTTGAAACCAGTCTCATTGCGCTTCCCTCAGTCCGCC
JMSF035O14+ GTTCAAAGTTGAAACCAGTCTCATTGCGCTTCCCTCAGTCCGCCCATTTTCC
JMSF008B23+ GTTCAAAGTTGAAACCAGTCTCATTGCGCTTCCCTCAGTCCGCCCATTTTCCTTTCCCCC
____________________________________________________________
consensus GTTCAAAGTTGAAACCAGTCTCATTGCGCTTCCCTCAGTCCGCCCATTTTCCTTTCCCCC