| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF007P19 | Sequence | 245 | 000615 (5) | ||||||||
| JMSF017G18 | Sequence | 489 | 000615 (5) | ref|XP_006367308.1| | 7e-26 | PREDICTED: J domain-containing protein required for chloroplast accumulation re | 745 | 011407 (4) | ref|XP_009599410.1| | 3e-66 | PREDICTED: J domain-containing protein required for chloroplast accumulation re |
| JMSF028E13 | Sequence | 677 | 000615 (5) | ref|XP_006367308.1| | 6e-44 | PREDICTED: J domain-containing protein required for chloroplast accumulation re | 798 | 011407 (4) | ref|XP_009599410.1| | 1e-80 | PREDICTED: J domain-containing protein required for chloroplast accumulation re |
| JMSF043J09 | Sequence | 717 | 000615 (5) | ref|XP_006367308.1| | 5e-46 | PREDICTED: J domain-containing protein required for chloroplast accumulation re | 724 | 011407 (4) | ref|XP_009599410.1| | 4e-68 | PREDICTED: J domain-containing protein required for chloroplast accumulation re |
| JMSF045D03 | Sequence | 707 | 000615 (5) | ref|XP_006367308.1| | 1e-43 | PREDICTED: J domain-containing protein required for chloroplast accumulation re | 696 | 011407 (4) | ref|XP_009599410.1| | 9e-69 | PREDICTED: J domain-containing protein required for chloroplast accumulation re |
This contig is upended
. : . : . : . : . : . :
JMSF043J09+ TCT
____________________________________________________________
consensus TCT
. : . : . : . : . : . :
JMSF043J09+ CACCAGAAGATCTTTCATCACCACTGAGAGATGCTTCGCGGGATAAAGATCTTTGCCTGA
____________________________________________________________
consensus CACCAGAAGATCTTTCATCACCACTGAGAGATGCTTCGCGGGATAAAGATCTTTGCCTGA
. : . : . : . : . : . :
JMSF043J09+ AAATCATCTGACTCCCATTCTCTCGCTGCCTCGATTGGCTTGAAAATCTAGAGAGGGAGC
JMSF028E13+ TCGCTGCCTCGATNGGCTTGAAAATCTAGAGAGGGAGC
JMSF045D03+ ACTCCCATTCTCTCGCTGCCTCGATTGGCTTGAAAATCTAGAGAGGGAGC
____________________________________________________________
consensus AAATCATCTGACTCCCATTCTCTCGCTGCCTCGATTGGCTTGAAAATCTAGAGAGGGAGC
. : . : . : . : . : . :
JMSF043J09+ CATTCGACCCGCCATCCTTGCTATTATGGTATGGACTACGATTGCCAGAACCAAATGTAG
JMSF028E13+ CATTCGACCCGCCATCCTTGCTATTATGGTATGGACTACGATTGCCAGAACCAAATGTAG
JMSF045D03+ CATTCGACCCGCCATCCTTGCTATTATGGTATGGACTACGATTGCCAGAACCAAATGTAG
____________________________________________________________
consensus CATTCGACCCGCCATCCTTGCTATTATGGTATGGACTACGATTGCCAGAACCAAATGTAG
. : . : . : . : . : . :
JMSF043J09+ GATATTCCGTCGCTTTTGTCACCTTAGCAGGAAGACTGAATTGAGCTGGGAGAGAAGTGG
JMSF028E13+ GATATTCCGTCGCTTTTGTCACCTTAGCAGGAAGACTGAATTGAGCTGGGAGAGAAGTGG
JMSF045D03+ GATATTCCGTCGCTTTTGTCACCTTAGCAGGAAGACTGAATTGAGCTGGGAGAGAAGTGG
____________________________________________________________
consensus GATATTCCGTCGCTTTTGTCACCTTAGCAGGAAGACTGAATTGAGCTGGGAGAGAAGTGG
. : . : . : . : . : . :
JMSF043J09+ AAAAAGGTTCAGCCTTTGGGGGCAAAGGCCAAGCAGGGCTTAAAACTCTGGAACCATAAG
JMSF028E13+ AAAAAGGTTCAGCCTTTGGGGGCAAAGGCCAAGCAGGGCTTAAAACTCTGGAACCATAAG
JMSF017G18+ TGGAACCATAAG
JMSF045D03+ AAAAAGGTTCAGCCTTTGGGGGCAAAGGCCAAGCAGGGCTTAAAACTCTGGAACCATAAG
____________________________________________________________
consensus AAAAAGGTTCAGCCTTTGGGGGCAAAGGCCAAGCAGGGCTTAAAACTCTGGAACCATAAG
. : . : . : . : . : . :
JMSF043J09+ CCTCCATTTCCATCCTCCTTGGTGAACTGTAAGCCTCATCACCTCCAAATATATCATCAT
JMSF028E13+ CCTCCATTTCCATCCTCCTTGGTGAACTGTAAGCCTCATCACCTCCAAATATATCATCAT
JMSF017G18+ CCTCCATTTCCATCCTCCTTGGTGAACTGTAAGCCTCATCACCTCCAAATATATCATCAT
JMSF045D03+ CCTCCATTTCCATCCTCCTTGGTGAACTGTAAGCCTCATCACCTCCAAATATATCATCAT
____________________________________________________________
consensus CCTCCATTTCCATCCTCCTTGGTGAACTGTAAGCCTCATCACCTCCAAATATATCATCAT
. : . : . : . : . : . :
JMSF043J09+ AAAACTCATTGCCCTGCTGGCTGCATCTTCTATCTGCCCCGAAAACCGGTTTCTCGGTTA
JMSF028E13+ AAAACTCATTGCCCTGCTGGCTGCATCTTCTATCTGCCCCGAAAACCGGTTTCTCGGTTA
JMSF017G18+ AAAACTCATTGCCCTGCTGGCTGCATCTTCTATCTGCCCCGAAAACCGGTTTCTCGGTTA
JMSF045D03+ AAAACTCATTGCCCTGCTGGCTGCATCTTCTATCTGCCCCGAAAACCGGTTTCTCGGTTA
____________________________________________________________
consensus AAAACTCATTGCCCTGCTGGCTGCATCTTCTATCTGCCCCGAAAACCGGTTTCTCGGTTA
. : . : . : . : . : . :
JMSF043J09+ ATCCAGACCAAGAACTGCGCGGGACGACAGCTTCTGAATCCTCCTCGGACTCCATCTGAT
JMSF028E13+ ATCCAGACCAAGAACTGCGCGGGACGACAGCTTCTGAATCCTCCTCGGACTCCATCTGAT
JMSF017G18+ ATCCAGACCAAGAACTGCGCGGGACGACAGCTTCTGAATCCTCCTCGGACTCCATCTGAT
JMSF045D03+ ATCCAGACCAAGAACTGCGCGGGACGACAGCTTCTGAATCCTCCTCGGACTCCATCTGAT
____________________________________________________________
consensus ATCCAGACCAAGAACTGCGCGGGACGACAGCTTCTGAATCCTCCTCGGACTCCATCTGAT
. : . : . : . : . : . :
JMSF043J09+ CATTGAAACTGTTCCTCTTCCTCACTTCCTGGATTGAGAACCTCCTAGGAGGCCCCCCAA
JMSF028E13+ CATTGAAACTGTTCCTCTTCCTCACTTCCTGGATTGAGAACCTCCTAGGAGGCCCCCCAA
JMSF017G18+ CATTGAAACTGTTCCTCTTCCTCACTTCCTGGATTGAGAACCTCCTAGGAGGCCCCCCAA
JMSF045D03+ CATTGAAACTGTTCCTCTTCCTCACTTCCTGGATTGAGAACCTCCTAGGAGGCCCCCCAA
JMSF007P19+ CCCAA
____________________________________________________________
consensus CATTGAAACTGTTCCTCTTCCTCACTTCCTGGATTGAGAACCTCCTAGGAGGCCCCCCAA
. : . : . : . : . : . :
JMSF043J09+ AGACATCATTGAAATCCATATCCATGTTGTCTGCACGTGTGGTCTCAAATGAACCCTGCA
JMSF028E13+ AGACATCATTGAAATCCATATCCATGTTGTCTGCACGTGTGGTCTCAAATGAACCCTGCA
JMSF017G18+ AGACATCATTGAAATCCATATCCATGTTGTCTGCACGTGTGGTCTCAAATGAACCCTGCA
JMSF045D03+ AGACATCATTGAAATCCATATCCATGTTGTCTGCACGTGTGGTCTCAAATGAACCCTGCA
JMSF007P19+ AGACATCATTGAAATCCATATCCATGTTGTCTGCACGTGTGGTCTCAAATGAACCCTGCA
____________________________________________________________
consensus AGACATCATTGAAATCCATATCCATGTTGTCTGCACGTGTGGTCTCAAATGAACCCTGCA
. : . : . : . : . : . :
JMSF043J09+ AAAGCCTCTCCATGGTGGTGATGGCTCACAGCAAGCATTAAAAGCACAGTTCAAAACCAA
JMSF028E13+ AAAGCCTCTCCATGGTGGTGATGGCTCACAGCAAGCATTAAAAGCACAGTTCAAAACCAA
JMSF017G18+ AAAGCCTCTCCATGGTGGTGATGGCTCACAGCAAGCATTAAAAGCACAGTTCAAAACCAA
JMSF045D03+ AAAGCCTCTCCATGGTGGTGATGGCTCACAGCAAGCATTAAAAGCACAGTTCAAAACCAA
JMSF007P19+ AAAGCCTCTCCATGGTGGTGATGGCTCACAGCAAGCATTAAAAGCACAGTTCAAAACCAA
____________________________________________________________
consensus AAAGCCTCTCCATGGTGGTGATGGCTCACAGCAAGCATTAAAAGCACAGTTCAAAACCAA
. : . : . : . : . : . :
JMSF043J09+ TATTTGGCGGGAAACACTACTAGAGAATCTGAGATGAGAGGAGGAGCTTTC
JMSF028E13+ TATTTGGCGGGAAACACTACTAGAGAATCTGAGATGAGAGGAGGAGCTTTCTCATTGAAG
JMSF017G18+ TATTTGGCGGGAAACACTACTAGAGAATCTGAGATGAGAGGAGGAGCTTTCTCATTGAAG
JMSF045D03+ TATTTGGCGGGAAACACTACTAGAGAATCTGAGATGAGAGGAGGAGCTTTCTCATTGAAG
JMSF007P19+ TATTTGGCGGGAAACACTACTAGAGAATCTGAGATGAGAGGAGGAGCTTTCTCATTGAAG
____________________________________________________________
consensus TATTTGGCGGGAAACACTACTAGAGAATCTGAGATGAGAGGAGGAGCTTTCTCATTGAAG
. : . : . : . : . : . :
JMSF028E13+ AGGAGGAGGAGCATGGAAGACATTAATGAGTGCTGCAC
JMSF017G18+ AGGAGGAGGAGCATGGAAGACATTAATGAGTGCTGCACAAA
JMSF045D03+ AGGAGGAGGAGCATGGAAGACATTAATGAGTGCTGCACAAA
JMSF007P19+ AGGAGGAGGAGCATGGAAGACATTAATGAGTGCTGCACAAACTGTGTGCACCTTTGAGTC
____________________________________________________________
consensus AGGAGGAGGAGCATGGAAGACATTAATGAGTGCTGCACAAACTGTGTGCACCTTTGAGTC