Contig 000612:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005N16Sequence206000612 (2)emb|CDP15866.1|7e-20unnamed protein product [Coffea canephora]341004189 (3)ref|XP_010260322.1|8e-04PREDICTED: DDB1- and CUL4-associated factor 13 [Nelumbo nucifera]
JMSF007K02Sequence476000612 (2)ref|XP_004168344.1|2e-79PREDICTED: DDB1- and CUL4-associated factor 13-like, partial [Cucumis sativus]827004189 (3)ref|XP_002276985.1|3e-94PREDICTED: DDB1- and CUL4-associated factor 13 [Vitis vinifera] emb|CBI21898.3|

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF007K02+ ACAGTGCAATCAGTTCCACATGACACAAGAATTCGACCATCTGTAGACGCTGCCAA
                      ____________________________________________________________
consensus ACAGTGCAATCAGTTCCACATGACACAAGAATTCGACCATCTGTAGACGCTGCCAA
 
. : . : . : . : . : . :
JMSF007K02+ TCCATGCACTGCACCTTGGTGACCAGGAAACTGACATACTGTTTTCCTGTTAGCTATATC
                      ____________________________________________________________
consensus TCCATGCACTGCACCTTGGTGACCAGGAAACTGACATACTGTTTTCCTGTTAGCTATATC
 
. : . : . : . : . : . :
JMSF007K02+ CCAAAGGCGAATATCTCCATCCATTGAACCCGAAAATATTCCTTTCAAGTGATTTGGATT
                      ____________________________________________________________
consensus CCAAAGGCGAATATCTCCATCCATTGAACCCGAAAATATTCCTTTCAAGTGATTTGGATT
 
. : . : . : . : . : . :
JMSF007K02+ TTTAGCCATTGCCGAGATTGCATCTATATGCCCATCCATAGCCGCAACGAATGGCCTCGC
                      ____________________________________________________________
consensus TTTAGCCATTGCCGAGATTGCATCTATATGCCCATCCATAGCCGCAACGAATGGCCTCGC
 
. : . : . : . : . : . :
JMSF005N16+ ACAGCGTTCAAAGCACGGACGTATTCCGTCGCCTTCTCTTG
JMSF007K02+ AAATATCTTCTCTAACTTAACAGCGTTCAAAGCACGGACGTATTCCGTCGCCTTCTCTTG
                      ____________________________________________________________
consensus AAATATCTTCTCTAACTTAACAGCGTTCAAAGCACGGACGTATTCCGTCGCCTTCTCTTG
 
. : . : . : . : . : . :
JMSF005N16+ AGTTCGAAGTTTGGGATCGAAGTTTCGAAATACCCTCTGAAGGTCCTGACTGCGTTCTCG
JMSF007K02+ AGTTCGAAGTTTGGGATCGAAGTTTCGAAATACCCTCTGAAGGTCCTGACTGCGTTCTCG
                      ____________________________________________________________
consensus AGTTCGAAGTTTGGGATCGAAGTTTCGAAATACCCTCTGAAGGTCCTGACTGCGTTCTCG
 
. : . : . : . : . : . :
JMSF005N16+ GGTGAAGTCATCCGTCGAACGCGATATCACCTTCACCTTCACCATTCCGTCTACCTTCGA
JMSF007K02+ GGTGAAGTCATCCGTCGAACGCGATATCACCTTCACCTTCACCATTCCGTCTACCTTCGA
                      ____________________________________________________________
consensus GGTGAAGTCATCCGTCGAACGCGATATCACCTTCACCTTCACCATTCCGTCTACCTTCGA
 
. : . : . : . : . : . :
JMSF005N16+ CCGAGGAGATGAATGCCACAGAGAAAAGAGAGACGAGACGGTCC
JMSF007K02+ CCGAGGAGATGAATGCCACAGAGAAAAGAGAGACGAGACGGTCCAGAGAAACCCTACATC
                      ____________________________________________________________
consensus CCGAGGAGATGAATGCCACAGAGAAAAGAGAGACGAGACGGTCCAGAGAAACCCTACATC