Contig 000594:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN032J22Sequence511000594 (6)ref|XP_003616767.1|3e-27Protein transport protein SEC61 gamma subunit [Medicago truncatula]
JMFS047E03Sequence490000594 (6)ref|XP_003616767.1|3e-27Protein transport protein SEC61 gamma subunit [Medicago truncatula]
JMFS079A04Sequence504000594 (6)ref|XP_003616767.1|3e-27Protein transport protein SEC61 gamma subunit [Medicago truncatula]
JMFS079A05Sequence504000594 (6)ref|XP_003616767.1|3e-27Protein transport protein SEC61 gamma subunit [Medicago truncatula]
JMSF005P17Sequence267000594 (6)emb|CDP16700.1|1e-26unnamed protein product [Coffea canephora]
JMSF005P19Sequence264003487 (5)ref|XP_010665226.1|65.5PREDICTED: uncharacterized protein LOC104882706 [Vitis vinifera]152000594 (6)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS079A04+ AAAACAAATTTGATTGATCACTTTATA
JMFS079A05+ AAAACAAATTTGATTGATCACTTTATA
JMFS047E03+ AAAACAAATTTGATTGATCACTTTATA
JMFN032J22+ AATGTTCAAAACAAATTTGATTGATCACTTTATA
                      ____________________________________________________________
consensus AATGTTCAAAACAAATTTGATTGATCACTTTATA
 
. : . : . : . : . : . :
JMFS079A04+ ATGGTAGCTAACATCATCATAACAAATAAGGGTAGACCAAGGTAAAACTACATACAGTCA
JMFS079A05+ ATGGTAGCTAACATCATCATAACAAATAAGGGTAGACCAAGGTAAAACTACATACAGTCA
JMFS047E03+ ATGGTAGCTAACATCATCATAACAAATAAGGGTAGACCAAGGTAAAACTACATACAGTCA
JMFN032J22+ ATGGTAGCTAACATCATCATAACAAATAAGGGTAGACCAAGGTAAAACTACATACAGTCA
                      ____________________________________________________________
consensus ATGGTAGCTAACATCATCATAACAAATAAGGGTAGACCAAGGTAAAACTACATACAGTCA
 
. : . : . : . : . : . :
JMFS079A04+ GTACAAATATTGAAATTTAACTGTTGTGAACCCTAACTCAGACTGGAAAAACGAACAACA
JMFS079A05+ GTACAAATATTGAAATTTAACTGTTGTGAACCCTAACTCAGACTGGAAAAACGAACAACA
JMFS047E03+ GTACAAATATTGAAATTTAACTGTTGTGAACCCTAACTCAGACTGGAAAAACGAACAACA
rJMSF005P19- TGAAATTTAACTGTTGTGAACCCTAACTCAGACTGGATAAACGAACAACA
JMFN032J22+ GTACAAATATTGAAATTTAACTGTTGTGAACCCTAACTCAGACTGGAAAAACGAACAACA
                      ____________________________________________________________
consensus GTACAAATATTGAAATTTAACTGTTGTGAACCCTAACTCAGACTGGAAAAACGAACAACA
 
. : . : . : . : . : . :
JMFS079A04+ AAACATCTATGCTACTTGAGGTGCATCCCACTGCATTAGTGATTCCCATGGTAGCGAGGC
JMFS079A05+ AAACATCTATGCTACTTGAGGTGCATCCCACTGCATTAGTGATTCCCATGGTAGCGAGGC
JMFS047E03+ AAACATCTATGCTACTTGAGGTGCATCCCACTGCATTAGTGATTCCCATGGTAGCGAGGC
rJMSF005P19- NAACATCTATGCTANTTGAGGTGCATCCCACTGCATTAGTGANTCCCATGGT
JMFN032J22+ AAACATCTATGCTACTTGAGGTGCATCCCACTGCATTAGTGATTCCCATGGTAGCGAGGC
                      ____________________________________________________________
consensus AAACATCTATGCTACTTGAGGTGCATCCCACTGCATTAGTGATTCCCATGGTAGCGAGGC
 
. : . : . : . : . : . :
JMFS079A04+ AGATCAGTCCTGATGACCAGCATCAACCAGATCCGACGATAATGTTGTTGATGGGGATGA
JMFS079A05+ AGATCAGTCCTGATGACCAGCATCAACCAGATCCGACGATAATGTTGTTGATGGGGATGA
JMFS047E03+ AGATCAGTCCTGATGACCAGCATCAACCAGATCCGACGATAATGTTGTTGATGGGGATGA
JMFN032J22+ AGATCAGTCCTGATGACCAGCATCAACCAGATCCGACGATAATGTTGTTGATGGGGATGA
JMSF005P17+ CGACGATAATGTTGTTGATGGGGATGA
                      ____________________________________________________________
consensus AGATCAGTCCTGATGACCAGCATCAACCAGATCCGACGATAATGTTGTTGATGGGGATGA
 
. : . : . : . : . : . :
JMFS079A04+ AAATCAGCTTGACGAAGAACCCTACAAATCCCATTACCACGAACCCGATCGCAGTTCGAA
JMFS079A05+ AAATCAGCTTGACGAAGAACCCTACAAATCCCATTACCACGAACCCGATCGCAGTTCGAA
JMFS047E03+ AAATCAGCTTGACGAAGAACCCTACAAATCCCATTACCACGAACCCGATCGCAGTTCGAA
JMFN032J22+ AAATCAGCTTGACGAAGAACCCTACAAATCCCATTACCACGAACCCGATCGCAGTTCGAA
JMSF005P17+ AAATCAGCTTGACGAAGAACCCTACAAATCCCATTACCACGAACCCGATCGCAGTTCGAA
                      ____________________________________________________________
consensus AAATCAGCTTGACGAAGAACCCTACAAATCCCATTACCACGAACCCGATCGCAGTTCGAA
 
. : . : . : . : . : . :
JMFS079A04+ CCGCTACTTTCGAGAATTCTTTGCGGTCGGGCTTGTGGCATCTCTTGACGAGACGGACGC
JMFS079A05+ CCGCTACTTTCGAGAATTCTTTGCGGTCGGGCTTGTGGCATCTCTTGACGAGACGGACGC
JMFS047E03+ CCGCTACTTTCGAGAATTCTTTGCGGTCGGGCTTGTGGCATCTCTTGACGAGACGGACGC
JMFN032J22+ CCGCTACTTTCGAGAATTCTTTGCGGTCGGGCTTGTGGCATCTCTTGACGAGACGGACGC
JMSF005P17+ CCGCTACTTTCGAGAATTCTTTGCGGTCGGGCTTGTGGCATCTCTTGACGAGACGGACGC
                      ____________________________________________________________
consensus CCGCTACTTTCGAGAATTCTTTGCGGTCGGGCTTGTGGCATCTCTTGACGAGACGGACGC
 
. : . : . : . : . : . :
JMFS079A04+ TGTCCTTTGCGAAGTCTCTAAGAGGATCAAACACCGAATCCAAAGCATCCATTTCTCTCG
JMFS079A05+ TGTCCTTTGCGAAGTCTCTAAGAGGATCAAACACCGAATCCAAAGCATCCATTTCTCTCG
JMFS047E03+ TGTCCTTTGCGAAGTCTCTAAGAGGATCAAACACCGAATCCAAAGCATCCATTTCTCTCG
JMFN032J22+ TGTCCTTTGCGAAGTCTCTAAGAGGATCAAACACCGAATCCAAAGCATCCATTTCTCTCG
JMSF005P17+ TGTCCTTTGCGAAGTCTCTAAGAGGATCAAACACCGAATCCAAAGCATCCATTTCTCTCG
                      ____________________________________________________________
consensus TGTCCTTTGCGAAGTCTCTAAGAGGATCAAACACCGAATCCAAAGCATCCATTTCTCTCG
 
. : . : . : . : . : . :
JMFS079A04+ ATCACGAAAACTTTAGCCTTTGCCGGAGAAGGGAAGCGATTGACGAGGCGGAT
JMFS079A05+ ATCACGAAAACTTTAGCCTTTGCCGGAGAAGGGAAGCGATTGACGAGGCGGAT
JMFS047E03+ ATCACGAAAACTTTAGCCTTTGCCGGAGAAGGGAAGCGATTGA
JMFN032J22+ ATCACGAAAACTTTAGCCTTTGCCGGAGAAGGGAAGCGATTGACGAGGCGGAT
JMSF005P17+ ATCACGAAAACTTTAGCCTTTGCCGGAGAAGGGAAGCGATTGACGAGGCGGATTCTGAGC
                      ____________________________________________________________
consensus ATCACGAAAACTTTAGCCTTTGCCGGAGAAGGGAAGCGATTGACGAGGCGGATTCTGAGC