Contig 000582:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002H18Sequence425000582 (6)ref|XP_009609785.1|2e-47PREDICTED: axial regulator YABBY 1 [Nicotiana tomentosiformis]669006667 (25)gb|ABA81885.1|2e-75profilin-like [Solanum tuberosum]
JMSF004K10Sequence456000582 (6)ref|XP_009609785.1|6e-50PREDICTED: axial regulator YABBY 1 [Nicotiana tomentosiformis]
JMSF025O17Sequence626000582 (6)ref|XP_009609785.1|7e-97PREDICTED: axial regulator YABBY 1 [Nicotiana tomentosiformis]752000582 (6)emb|CDP19940.1|3e-125unnamed protein product [Coffea canephora]
JMSF045J16Sequence707000582 (6)ref|XP_009609785.1|8e-120PREDICTED: axial regulator YABBY 1 [Nicotiana tomentosiformis]738000582 (6)emb|CDP19940.1|4e-129unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF025O17- GATGTTGANAGACAAGATAATTAAAAGGAACACTTAGAGTACGTACGT
                      ____________________________________________________________
consensus GATGTTGANAGACAAGATAATTAAAAGGAACACTTAGAGTACGTACGT
 
. : . : . : . : . : . :
rJMSF025O17- ACGTTGGGAGACTAATTAATAAACATAGAAGAGGAAAGAAACATAG-GATTACATTACAC
rJMSF045J16- CGTTGGGAGACTAATTAATAAACATAGAAGAGGAAAGAAACATAGCGATTACATTACAC
                      ____________________________________________________________
consensus ACGTTGGGAGACTAATTAATAAACATAGAAGAGGAAAGAAACATAGCGATTACATTACAC
 
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rJMSF025O17- CATAACATAAGATGATGATGACTAGCTAGCTTGATCGATCATTAATTATTCTTAGATGAT
rJMSF045J16- CATAACATAAGATGATGATGACTAGCTAGCTTGATCGATCATTAATTATTCTTAGATGAT
                      ____________________________________________________________
consensus CATAACATAAGATGATGATGACTAGCTAGCTTGATCGATCATTAATTATTCTTAGATGAT
 
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rJMSF025O17- AATTATTAATAGGGAGATACACCCAAATTTGGTGGTGCCAGAAACCCATCTTTCATCAGA
rJMSF045J16- AATTATTAATAGGGAGATACACCCAAATTTGGTGGTGCCAGAAACCCATCTTTCATCAGA
                      ____________________________________________________________
consensus AATTATTAATAGGGAGATACACCCAAATTTGGTGGTGCCAGAAACCCATCTTTCATCAGA
 
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rJMSF025O17- CCATCCTCTCCTTCCTGTTGGCATGCATTGGGTTTCTTCACGGGTTGATCAGGCATAAGT
rJMSF045J16- CCATCCTCTCCTTCCTGTTGGCATGCATTGGGTTTCTTCACGGGTTGATCAGGCATAAGT
JMSF045J16+ TCCTGTTGGCATGCATTGGGTTTCTTCACGGGTTGATCAGGCATAAGT
                      ____________________________________________________________
consensus CCATCCTCTCCTTCCTGTTGGCATGCATTGGGTTTCTTCACGGGTTGATCAGGCATAAGT
 
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rJMSF025O17- CCGAAATGAATGTGAGGGAAGTGGGCCCAATTCTTTGCAGCTGCACTGAAGGCCTCTCTG
rJMSF045J16- CCGAAATGAATGTGAGGGAAGTGGGCCCAATTCTTTGCAGCTGCACTGAAGGCCTCTCTG
JMSF025O17+ TTTGCAGCTGCACTGAAGGCCTCTCTG
JMSF045J16+ CCGAAATGAATGTGAGGGAAGTGGGCCCAATTCTTTGCAGCTGCACTGAAGGCCTCTCTG
                      ____________________________________________________________
consensus CCGAAATGAATGTGAGGGAAGTGGGCCCAATTCTTTGCAGCTGCACTGAAGGCCTCTCTG
 
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rJMSF025O17- TGGCTTATATCAGGGTTTCCAGCTTTGATACGCTGGATCTCATCCTTGATGAAGCGGTTG
rJMSF045J16- TGGCTTATATCAGGGTTTCCAGCTTTGATACGCTGGATCTCATCCTTGATGAAGCGGTTG
JMSF025O17+ TNGCTTATATCAGGGTTTCCAGCTTTGATACGCTGGATCTCATCCTTGATGAAGCGGTTG
JMSF045J16+ TGGCTTATATCAGGGTTTCCAGCTTTGATACGCTGGATCTCATCCTTGATGAAGCGGTTG
                      ____________________________________________________________
consensus TGGCTTATATCAGGGTTTCCAGCTTTGATACGCTGGATCTCATCCTTGATGAAGCGGTTG
 
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rJMSF025O17- TAAGCAGATGGCACTCTCTGTCTCTTCTCCGGGGGTCTATTAGCGACAGGAGGCTTAGGA
rJMSF045J16- TAAGCAGATGGCACTCTCTGTCTCTTCTCCGGGGGTCTATTAGCGACAGGAGGCTTAGGA
JMSF025O17+ TAAGCAGATGGCACTCTCTGTCTCTTCTCCGGGGGTCTATTAGCGACAGGAGGCTTAGGA
JMSF045J16+ TAAGCAGATGGCACTCTCTGTCTCTTCTCCGGGGGTCTATTAGCGACAGGAGGCTTAGGA
                      ____________________________________________________________
consensus TAAGCAGATGGCACTCTCTGTCTCTTCTCCGGGGGTCTATTAGCGACAGGAGGCTTAGGA
 
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rJMSF025O17- AGCTCATCAACTCCTCGGATTGGCATGAGAGACTCGTTGGGGTTTGGCTGATTCATCAAC
rJMSF045J16- AGCTCATCAACTCCTCGGATTGGCATGAGAGACTCGTTGGGGTTTGGCTGATTCATCAAC
JMSF025O17+ AGCTCATCAACTCCTCGGATTGGCATGAGAGACTCGTTGGGGTTTGGCTGATTCATCAAC
JMSF045J16+ AGCTCATCAACTCCTCGGATTGGCATGAGAGACTCGTTGGGGTTTGGCTGATTCATCAAC
JMSF002H18+ ATCAAC
JMSF004K10+ ATGAGAGACTCGNTGGGGTTTGGCTGATTCATCAAC
                      ____________________________________________________________
consensus AGCTCATCAACTCCTCGGATTGGCATGAGAGACTCGTTGGGGTTTGGCTGATTCATCAAC
 
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rJMSF025O17- AGACTTGGCGGAGTGTTGCGAATTTCATCCAGGAGATTTTGAGGGGAGAAGAAAGAATGG
rJMSF045J16- AGACTTGGCGGAGTGTTGCGAATTTCATCCAGGAGATTTTGAGGGGAGAAGAAAGAATGG
JMSF025O17+ AGACTTGGCGGAGTGTTGCGAATTTCATCCAGGAGATTTTGAGGGGAGAAGAAAGAATGG
JMSF045J16+ AGACTTGGCGGAGTGTTGCGAATTTCATCCAGGAGATTTTGAGGGGAGAAGAAAGAATGG
JMSF002H18+ AGACTNGGCGGAGTGTTGCGAATTTCATCCAGGAGATTTTGAGGGGAGAAGAAAGAATGG
JMSF004K10+ AGACTAGGCGGAGTGTTGCGAATTTCATCCAGGAGATTTNGAGGGGAGAAGAAAGAATGG
                      ____________________________________________________________
consensus AGACTTGGCGGAGTGTTGCGAATTTCATCCAGGAGATTTTGAGGGGAGAAGAAAGAATGG
 
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rJMSF025O17- GGAAGGTGAAGCTGGTTGGGGGCGGTGGGGAGGAGGAGGCCGCGCATGTTGACGGAGAGA
rJMSF045J16- GGAAGGTGAAGCTGGTTGGGGGCGGTGGGGAGGAGGAGGCCGCGCATGTTGACGGAGAGA
JMSF025O17+ GGAAGGTGAAGCTGGTTGGGGGCGGTGGGGAGGAGGAGGCCGCGCATGTTGACGGAGAGA
JMSF045J16+ GGAAGGTGAAGCTGGTTGGGGGCGGTGGGGAGGAGGAGGCCGCGCATGTTGACGGAGAGA
JMSF002H18+ GGAAGGTGAAGCTGGTTGGGGGCGGTGGGGAGGAGGAGGCCGCGCATGTTGACGGAGAGA
JMSF004K10+ NGAAGGTGAAGCTGGTTGGGGGCGGTGGGGAGGAGGAGGCCGCGCATGTTGACGGAGAGA
                      ____________________________________________________________
consensus GGAAGGTGAAGCTGGTTGGGGGCGGTGGGGAGGAGGAGGCCGCGCATGTTGACGGAGAGA
 
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rJMSF025O17- AGGTTGGTGCAATGGCCGCATCGAACCGTCACAGTCTTGAATAAGCTGGAGCANGGAACA
rJMSF045J16- AGGTTGGTGCAATGGCCGCATCGAACCGTCACAGTCTTGAATAAGCTGGAGTAAGGAACA
JMSF025O17+ AGGTTGGTGCAATGGCCGCATCGAACCGTCACAGTCTTGAATAAGCTGGAGCAAGGAACA
JMSF045J16+ AGGTTGGTGCAATGGCCGCATCGAACCGTCACAGTCTTGAATAAGCTGGAGTAAGGAACA
JMSF002H18+ AGGTTGGTGCAATGGCCGCATCGAACCGTCACAGTCTTGAATAAGCTGGAGCAAGGAACA
JMSF004K10+ AGGTTGGTGCAATGGCCGCATCGAACCGTCACAGTCTTGAATAAGCNGGAGCAAGGAACA
                      ____________________________________________________________
consensus AGGTTGGTGCAATGGCCGCATCGAACCGTCACAGTCTTGAATAAGCTGGAGCAAGGAACA
 
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rJMSF025O17- CTCACCGCGAGGACAGTGTCNCAAAAGTTGCAATGGACGTAACA
rJMSF045J16- CTCACCGCGAGGACAGTGTCACAAAAGTTGCAATGGACGTAACAGAGCTGCTCGCCAGAG
JMSF025O17+ CTCACCGCGAGGACAGTGTCACAAAAGTTGCAATGGACGTAACAGAGCTGCTCGCCAGAG
JMSF045J16+ CTCACCGCGAGGACAGTGTCACAAAAGTTGCAATGGACGTAACAGAGCTGCTCGCCAGAG
JMSF002H18+ CTCACCGCGAGGACAGTGTCACAAAAGTTGCAATGGACGTAACAGAGCTGCTCGCCAGAG
JMSF004K10+ CTCACCGCGAGGACAGTGTCACAAAAGTTGCAATGGACGTAACAGAGCTGCTCGCCAGAG
                      ____________________________________________________________
consensus CTCACCGCGAGGACAGTGTCACAAAAGTTGCAATGGACGTAACAGAGCTGCTCGCCAGAG
 
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rJMSF045J16- GGGGAGAGGTGGTGGGGGT
JMSF025O17+ GGGGAGAGGTGGTGGGGGTGGTGGTGATGGTGGTCCGGAGCGAAAGCAGTAGATGAAGAA
JMSF045J16+ GGGGAGAGGTGGTGGGGGTGGTGGTGATGGTGGTCCGGAGCGAAAGCAGTAGATGAAGAA
JMSF002H18+ GGGGAGAGGTGGTGGGGGTGGTGGTGATGGTGGTCCGGAGCGAAAGCAGTAGATGAAGAA
JMSF004K10+ GGGGAGAGGTGGTGGGGGTGGTGGTGATGGTGGTCCGGAGCGAAAGCAGTAGATGAAGAA
                      ____________________________________________________________
consensus GGGGAGAGGTGGTGGGGGTGGTGGTGATGGTGGTCCGGAGCGAAAGCAGTAGATGAAGAA
 
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JMSF025O17+ GACATGTTTTTTGGTTGGAGATGATAATATGGATGCCCAAAGCTGGGTAGCTAGCTTGAT
JMSF045J16+ GACATGTTTTTTGGTTGGAGATGATAATATGGATGCCCAAAGCTGGGTAGCTAGCTTGAT
JMSF002H18+ GACATGTTTTTTGGTTGGAGATGATAATATGGATGCCCAAAGCTGGGTAGCTAGCTTGAT
JMSF004K10+ GACATGTTTTTTGGTTGGAGATGATAATATGGATGCCCAAAGCTGGGTAGCTAGCTTGAT
                      ____________________________________________________________
consensus GACATGTTTTTTGGTTGGAGATGATAATATGGATGCCCAAAGCTGGGTAGCTAGCTTGAT
 
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JMSF025O17+ TGTTTTCTTGATTTGATTTGATTTGATTGATTGATAGAGTGACTGATCGAGGGACGA
JMSF045J16+ TGTTTTCTTGATTTGATTTGATTTGATTGATTGATAGAGTGACTGATCGAGGGACGA
JMSF002H18+ TGTTTTCTTGATTTGATTTGATTTGATTGATTGATAGAGTGACTGATCGAGGGACGA
JMSF004K10+ TGTTTTCTTGATTTGATTTGATTTGATTGATTGATAGAGTGACTGATCGAGGGACGACCC
                      ____________________________________________________________
consensus TGTTTTCTTGATTTGATTTGATTTGATTGATTGATAGAGTGACTGATCGAGGGACGACCC