Contig 000581:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027I05Sequence527000581 (4)ref|XP_009615062.1|3e-67PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Nicotiana tomentosi716011220 (3)ref|XP_006360043.1|1e-120PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Solanum tubero
JMFF050N12Sequence597000581 (4)ref|XP_009615062.1|5e-84PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Nicotiana tomentosi436011220 (3)ref|XP_010327114.1|1e-28PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Solanum lycopersicu
JMSF004I11Sequence349000581 (4)ref|XP_009615062.1|1e-13PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Nicotiana tomentosi
JMSF049K13Sequence666000581 (4)ref|XP_009615062.1|2e-99PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Nicotiana tomentosi725011220 (3)ref|XP_006360043.1|6e-127PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Solanum tubero

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF049K13+ ACTGCAGCTTGCTCCCCGACCTCTTTACGCAAAAT
                      ____________________________________________________________
consensus ACTGCAGCTTGCTCCCCGACCTCTTTACGCAAAAT
 
. : . : . : . : . : . :
JMFF050N12+ TCCAAATCAATAGAGTGCAAAGTTCTCAA
JMSF049K13+ CTTGAGGGAGTTCCCCACAAACTGTAGCTTTTCCAAATCAATAGAGTGCAAAGTTCTCAA
                      ____________________________________________________________
consensus CTTGAGGGAGTTCCCCACAAACTGTAGCTTTTCCAAATCAATAGAGTGCAAAGTTCTCAA
 
. : . : . : . : . : . :
JMFF050N12+ TCCCTCCTCAGAACGAATGGGAGACTGAATCACAGGACCACGAACCTCTTCAATGTCAAA
JMSF049K13+ TCCCTCCTCAGAACGAATGGGAGACTGAATCACAGGACCACGAACCTCTTCAATGTCAAA
JMFF027I05+ CCTCTTCAATGTCAAA
                      ____________________________________________________________
consensus TCCCTCCTCAGAACGAATGGGAGACTGAATCACAGGACCACGAACCTCTTCAATGTCAAA
 
. : . : . : . : . : . :
JMFF050N12+ TTGGACTCCAAATGCAGGAAGTGGGGTTAATATGTCAGAGAAGATGATTACTCCATCAGG
JMSF049K13+ TTGGACTCCAAATGCAGGAAGTGGGGTTAATATGTCAGAGAAGATGATTACTCCATCAGG
JMFF027I05+ TTGGACTCCAAATGCAGGAAGTGGGGTTAATATGTCAGAGAAGATGATTACTCCATCAGG
                      ____________________________________________________________
consensus TTGGACTCCAAATGCAGGAAGTGGGGTTAATATGTCAGAGAAGATGATTACTCCATCAGG
 
. : . : . : . : . : . :
JMFF050N12+ ATGAAAAGCTTCCCAAGGCTGCAAAGAAATTTCGACAATGAGATCAGTTGTCTCTGACCT
JMSF049K13+ ATGAAAAGCTTCCCAAGGCTGCAAAGAAATTTCGACAATGAGATCAGTTGTCTCTGACCT
JMFF027I05+ ATGAAAAGCTTCCCAAGGCTGCAAAGAAATTTCGACAATGAGATCAGTTGTCTCTGACCT
                      ____________________________________________________________
consensus ATGAAAAGCTTCCCAAGGCTGCAAAGAAATTTCGACAATGAGATCAGTTGTCTCTGACCT
 
. : . : . : . : . : . :
JMFF050N12+ CTCTCTGAAGGATGGGTGTTTCTCTGCAAGCTTTCTGTAAACAGCCATATACCTTCCTGC
JMSF049K13+ CTCTCTGAAGGATGGGTGTTTCTCTGCAAGCTTTCTGTAAACAGCCATATACCTTCCTGC
JMFF027I05+ CTCTCTGAAGGATGGGTGTTTCTCTGCAAGCTTTCTGTAAACAGCCATATACCTTCCTGC
                      ____________________________________________________________
consensus CTCTCTGAAGGATGGGTGTTTCTCTGCAAGCTTTCTGTAAACAGCCATATACCTTCCTGC
 
. : . : . : . : . : . :
JMFF050N12+ TTGACGCATCATCCAAGCTGGTGGGCGACTAACACGTTCTCTTCTTGCTGCCCTCACCAA
JMSF049K13+ TTGACGCATCATCCAAGCTGGTGGGCGACTAACACGTTCTCTTCTTGCTGCCCTCACCAA
JMFF027I05+ TTGACGCATCATCCAAGCTGGTGGGCGACTAACACGTTCTCTTCTTGCTGCCCTCACCAA
JMSF004I11+ TCCAAGCTGGTGGGCGACTAACACGTTCTNTTCTTGCTGCCCTCACCAA
                      ____________________________________________________________
consensus TTGACGCATCATCCAAGCTGGTGGGCGACTAACACGTTCTCTTCTTGCTGCCCTCACCAA
 
. : . : . : . : . : . :
JMFF050N12+ AAGTGGTTCTGAAGAAGAAGAGGAGGAGGAGGCGCACGCCCGTATGAACTTTGCGGGTTT
JMSF049K13+ AAGTGGTTCTGAAGAAGAAGAGGAGGAGGAGGCGCACGCCCGTATGAACTTTGCGGGTTT
JMFF027I05+ AAGTGGTTCTGAAGAAGAAGAGGAGGAGGAGGCGCACGCCCGTATGAACTTTGCGGGTTT
JMSF004I11+ AAGTGGTTCTGAAGAAGAAGAGGAGGAGGAGGCGCACGCCCGTATGAACTTTGCGGGTTT
                      ____________________________________________________________
consensus AAGTGGTTCTGAAGAAGAAGAGGAGGAGGAGGCGCACGCCCGTATGAACTTTGCGGGTTT
 
. : . : . : . : . : . :
JMFF050N12+ ACGGGAGGTCCGAATTGCGTTCAACCCATTGGGGATAAACCCTAATTGGGAAAGCGAGCT
JMSF049K13+ ACGGGAGGTCCGAATTGCGTTCAACCCATTGGGGATAAACCCTAATTGGGAAAGCGAGCT
JMFF027I05+ ACGGGAGGTCCGAATTGCGTTCAACCCATTGGGGATAAACCCTAATTGGGAAAGCGAGCT
JMSF004I11+ ACGGGAGGTCCGAATTGCGTTCAACCCATTGGGGATAAACCCTAATTGGGAAAGCGAGCT
                      ____________________________________________________________
consensus ACGGGAGGTCCGAATTGCGTTCAACCCATTGGGGATAAACCCTAATTGGGAAAGCGAGCT
 
. : . : . : . : . : . :
JMFF050N12+ TGAAGATTTCCAGCCCAGAGCGGGTGTCCCATAGCTACTGCTACACCCACTCGTTGCCAT
JMSF049K13+ TGAAGATTTCCAGCCCAGAGCGGGTGTCCCATAGCTACTGCTACACCCACTCGTTGCCAT
JMFF027I05+ TGAAGATTTCCAGCCCAGAGCGGGTGTCCCATAGCTACTGCTACACCCACTCGTTGCCAT
JMSF004I11+ TGAAGATTTCCAGCCCAGAGCGGGTGTCCCATAGCTACTGCTACACCCACTCGTTGCCAT
                      ____________________________________________________________
consensus TGAAGATTTCCAGCCCAGAGCGGGTGTCCCATAGCTACTGCTACACCCACTCGTTGCCAT
 
. : . : . : . : . : . :
JMFF050N12+ TAACACAGAGAAACCCATCTCAGCTTCTTCTGAACAGGGAAAGGGTCGAGAATCCCCAAC
JMSF049K13+ TAACACAGAGAAACCCATCTCAGCTTCTTCTGAACAGGGAAAGGGTCGAGAATCCCCAAC
JMFF027I05+ TAACACAGAGAAACCCATCTCAGCTTCTTCTGAACAGGGAAAGGGTCGAGAATCCCCAAC
JMSF004I11+ TAACACAGAGAAACCCATCTCAGCTTCTTCTGAACAGGGAAAGGGTCGAGAATCCCCAAC
                      ____________________________________________________________
consensus TAACACAGAGAAACCCATCTCAGCTTCTTCTGAACAGGGAAAGGGTCGAGAATCCCCAAC
 
. : . : . : . : . : . :
JMFF050N12+ CCCAGCTTCTTATCTTCCCACTTTAATC
JMSF049K13+ CCCAGCTTCTTATCTTCCCACTTCAATC
JMFF027I05+ CCCAGCTTCTTATCTTCCCACTTCAATC
JMSF004I11+ CCCAGCTTCTTATCTTCCCACTTCAATCGCTGTGTTTTGGCCTTTGGCCTTTGGCCTTCC
                      ____________________________________________________________
consensus CCCAGCTTCTTATCTTCCCACTTCAATCGCTGTGTTTTGGCCTTTGGCCTTTGGCCTTCC