Contig 000563:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001C04Sequence368020559ref|XP_009772022.1|6e-35PREDICTED: protein SRG1-like [Nicotiana sylvestris]381000563 (13)ref|XP_009772022.1|2e-24PREDICTED: protein SRG1-like [Nicotiana sylvestris]
JMFN033B21Sequence617000563 (13)ref|XP_009772022.1|7e-84PREDICTED: protein SRG1-like [Nicotiana sylvestris]
JMFS147F01Sequence634000563 (13)ref|XP_009772022.1|2e-84PREDICTED: protein SRG1-like [Nicotiana sylvestris]
JMSF003G01Sequence379000563 (13)ref|XP_007022033.1|2e-36Senescence-related gene 1 [Theobroma cacao] gb|EOY13558.1| Senescence-related ge689000563 (13)ref|XP_006355578.1|7e-75PREDICTED: protein SRG1-like [Solanum tuberosum]
JMSF046B15Sequence745000563 (13)ref|XP_002269087.1|2e-103PREDICTED: protein SRG1 [Vitis vinifera] emb|CBI30797.3| unnamed protein product653000563 (13)ref|XP_004233003.1|1e-65PREDICTED: protein SRG1-like [Solanum lycopersicum]
JMSF046E01Sequence251000563 (13)207000563 (13)
JMSF046P12Sequence685000563 (13)ref|XP_002269087.1|5e-90PREDICTED: protein SRG1 [Vitis vinifera] emb|CBI30797.3| unnamed protein product507000563 (13)ref|XP_009772022.1|2e-34PREDICTED: protein SRG1-like [Nicotiana sylvestris]
JMSF052A11Sequence653000563 (13)ref|XP_002269087.1|8e-83PREDICTED: protein SRG1 [Vitis vinifera] emb|CBI30797.3| unnamed protein product944000563 (13)ref|XP_009772022.1|1e-114PREDICTED: protein SRG1-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF046E01+ TTTTTTTTTTAAATGTAAAATTATTACATAGAAGATT
rJMSF003G01- ATT
rJMSF046P12- ATT
rJMSF052A11- ATT
                      ____________________________________________________________
consensus TTTTTTTTTTAAATGTAAAATTATTACATAGAAGATT
 
. : . : . : . : . : . :
rJMSF046E01- GATGGATGATTTTAAAAACTATTACAAGGCCCTATTTATACAAAATATAGGAA
JMSF046E01+ GGAATAAGATGGATGATTTTAAAAACTATTACAAGGCCCTATTTATACAAAATATAGGAA
rJMSF003G01- GGAATAAGATGGATGATTTTAAAAACTATTACAAGGCCCTATTTATACAAAATATAGGAA
rJMSF046P12- GGAATAAGATGGATGATTTTAAAAACTATTACAAGGCCCTATTTATACAAAATATAGGAA
rJMSF052A11- GGAATAAGATGGATGATTTTAAAAACTATTACAAGGCCCTATTTATACAAAATATAGGAA
                      ____________________________________________________________
consensus GGAATAAGATGGATGATTTTAAAAACTATTACAAGGCCCTATTTATACAAAATATAGGAA
 
. : . : . : . : . : . :
rJMSF046E01- ATAACAAATATATTACATAGGAGGATGAGAGGTAAATACAAAATTATAGGAATTAGGAAA
JMSF046E01+ ATAACAAATATATTACATAGGAGGATGAGAGGTAAATACAAAATTATAGGAATTAGGAAA
rJMSF003G01- ATAACAAATATATTACATAGGAGGATGAGAGGTAAATACAAAATTATAGGAATTAGGAAA
rJMSF046P12- ATAACAAATATATTACATAGGAGGATGAGAGGTAAATACAAAATTATAGGAATTAGGAAA
rJMSF052A11- ATAACAAATATATTACATAGGAGGATGAGAGGTAAATACAAAATTATAGGAATTAGGAAA
                      ____________________________________________________________
consensus ATAACAAATATATTACATAGGAGGATGAGAGGTAAATACAAAATTATAGGAATTAGGAAA
 
. : . : . : . : . : . :
rJMSF046E01- TCATGAGATTAGCATGCATACGTGGAAGTTGAAAAGTGAAATAGTCTGAAGAATCTGGAC
JMSF046E01+ TCATGAGATTAGCATGCATACGTGGAAGTTGAAAAGTGAAATAGTCTGAAGAATCTGGAC
rJMSF003G01- TCATGAGATTAGCATGCATACGTGGAAGTTGAAAAGTGAAATAGTCTGAAGAATCTGGAC
rJMSF046P12- TCATGAGATTAGCATGCATACGTGGAAGTTGAAAAGTGAAATAGTCTGAAGAATCTGGAC
rJMSF052A11- TCATGAGATTAGCATGCATACGTGGAAGTTGAAAAGTGAAATAGTCTGAAGAATCTGGAC
                      ____________________________________________________________
consensus TCATGAGATTAGCATGCATACGTGGAAGTTGAAAAGTGAAATAGTCTGAAGAATCTGGAC
 
. : . : . : . : . : . :
rJMSF046E01- CACATATTTTATTCTAACACGCTCCACTAACAGC
JMSF046E01+ CACATATTTTATTCTAACACGCTCCACTAACAGC
rJMSF003G01- CACATATTTTATTCTAACACGCTCCACTAACAGCTTGAGGACATTCTTCTATTTGGATCC
rJMSF046P12- CACATATTTTATTCTAACACGCTCCACTAACAGCTTGAGGACATTCTTCTATTTGGATCC
rJMFF001C04- AACAGATTGAGGACATTCTTCCGTTTGGATCC
rJMSF046B15- AACAGATTGAGGACATTCTTCCGTTTGGATCC
rJMSF052A11- CACATATTTTATTCTAACACGCTCCACTAACAGCTTGAGGACATTCTTCTATTTGGATCC
                      ____________________________________________________________
consensus CACATATTTTATTCTAACACGCTCCACTAACAGCTTGAGGACATTCTTCTATTTGGATCC
 
. : . : . : . : . : . :
rJMSF003G01- TCATAACATCTATATAAGACTTACTATCCAGCTTTCGACTATAGAATCCTCTGTAATAAT
rJMSF046P12- TCATAACATCTATATAAGACTTACTATCCAGCTTTCGACTATAGAATCCTCTGTAATAAT
rJMFF001C04- TCATAACATCTATATAAGATTTACTATCCAGCTTTCGACCAAAGAAGCCTCTGAAATAAT
rJMSF046B15- TCATAACATCTCTATAANATTTACTATCCAGCTTTCGACTATAGAATCCTCTGTAATAAT
rJMSF052A11- TCATAACATCTATATAAGACTTACTATCCAGCTTTCGACTATAGAATCCTCTGTAATAAT
                      ____________________________________________________________
consensus TCATAACATCTATATAAGACTTACTATCCAGCTTTCGACTATAGAATCCTCTGTAATAAT
 
. : . : . : . : . : . :
rJMSF003G01- CTGCAACTCCCACGTTCCTGAACTTGGCTGGATTTTGAGGGTTGATCAAACTTGGAACAG
rJMSF046P12- CTGCAACTCCCACGTTCCTGAACTTGGCTGGATTTTGAGGGTTGATCAAACTTGGAACAG
rJMFF001C04- CTGCGACTCCCACTTTCCTGAACTTGGCTGGATTTTGAGGGGTGATCAAACTTGGAGCAG
rJMSF046B15- CTGCAACTCCCACGTTCCTGAACTTGGCTGGATTTTGAGGGTTGATCAAACTTGGAACAG
rJMSF052A11- CTGCAACTCCCACGTTCCTGAACTTGGCTGGATTTTGAGGGTTGATCAAACTTGGAACAG
                      ____________________________________________________________
consensus CTGCAACTCCCACGTTCCTGAACTTGGCTGGATTTTGAGGGTTGATCAAACTTGGAACAG
 
. : . : . : . : . : . :
rJMSF003G01- GACCCAATTCTGCCTCAAGTCTGGGGCTCAGAAATGTCCCAACCGAAAGCCTTTCCTTTT
rJMSF046P12- GACCCAATTCTGCCTCAAGTCTGGGGCTCAGAAATGTCCCAACCGAAAGCCTTTCCTTTT
rJMFF001C04- GACCCAATTCTGCGTCAAGTCTGGGGCTCAAAAATGTTGCAACANACAGCCTTTCCTTTT
rJMSF046B15- GACCCAATTCTGCCTCAAGTCTGGGGCTCANAAATGTCCCAACCGAAAGCCTTTCCTTTT
rJMSF052A11- GACCCAATTCTGCCTCAAGTCTGGGGCTCAGAAATGTCCCAACCGAAAGCCTTTCCTTTT
                      ____________________________________________________________
consensus GACCCAATTCTGCCTCAAGTCTGGGGCTCAGAAATGTCCCAACCGAAAGCCTTTCCTTTT
 
. : . : . : . : . : . :
rJMSF003G01- CCGAGTTTAGTACTGCTCGATGCTCAACACTTTTGTAAATTCCATTTGTCAGTATCTCTA
rJMSF046P12- CCGAGTTTACTACTGCTCGATGCTCAACACTTTTGTAAATTCCATTTGTCAGTATCTCTA
rJMFF001C04- CNGANTTTACTACTG
rJMSF046B15- CCGAGTTTACTACNGCTCGATGCTCAACACTTTTGTAAATTCCATTTGTCAGTATCTCTA
rJMSF052A11- CCGAGTTTACTACTGCTCGATGCTCAACACTTTTGTAAATTCCATTTGTCAGTATCTCTA
                      ____________________________________________________________
consensus CCGAGTTTACTACTGCTCGATGCTCAACACTTTTGTAAATTCCATTTGTCAGTATCTCTA
 
. : . : . : . : . : . :
rJMSF003G01- GAATATCCCCGATGTTGATGACGAAGGCGCCATGGATGGGTTTAACAGGAATCCACATGC
rJMSF046P12- GAATATCCCC
rJMSF046B15- GAATATCCCCNATGTTGATGACNAAGGCGCCATGGATGGGTTTAACAGGAATCCACATGC
rJMSF052A11- GAATATCCCCGATGTTGATGACGAAGGCGCCATGGATGGGTTTAACAGGAATCCACATGC
                      ____________________________________________________________
consensus GAATATCCCCGATGTTGATGACGAAGGCGCCATGGATGGGTTTAACAGGAATCCACATGC
 
. : . : . : . : . : . :
rJMSF003G01- CTTCTTTCTTGATCTGGAGGCCTTCCATTTCATTGAGTTGGAGAAGGATTGTAAGCCCGA
rJMSF046B15- CTTCTTTCTTGATCTGGAGGCCTTCCATTTCATTGAGTTGGAGCAGGATTGTAAGCCCGA
rJMSF052A11- CTTCTTTCTTGATCTGGAGGCCTTCCATTTCATTGAGTTGGAGAAGGATTGTAAGCCCGA
JMSF046B15+ GAGTTGGAGCAGGATTGTAAGCCCGA
                      ____________________________________________________________
consensus CTTCTTTCTTGATCTGGAGGCCTTCCATTTCATTGAGTTGGAGCAGGATTGTAAGCCCGA
 
. : . : . : . : . : . :
rJMSF003G01- CAGCATCTGAGTGAGGATAAAGTCCTATGACTTTGTCGGGTTGGGGACAACGCGGATATT
rJMSF046B15- CAGCATCTGAGTGAGGATAAAGTCCTATGACATTGTCGGGTTGGGGACA
rJMSF052A11- CAGCATCTGAGTGAGGATAAAGTCCTATGACTTTGTCGGGTTGGGGACAACGCGGATATT
JMFN033B21+ CGCGGATATG
JMFS147F01+ GGTTGGGGACAACGAGGATAGT
JMSF046B15+ CAGCATNTGAGTGAGGATAAAGTCCTATGACATTGTCGGGTTGGGGACAACGCGGATATT
JMSF046P12+ GTCGGGTTGGGGACAACGCGGATATT
                      ____________________________________________________________
consensus CAGCATCTGAGTGAGGATAAAGTCCTATGACATTGTCGGGTTGGGGACAACGCGGATATT
 
. : . : . : . : . : . :
rJMSF003G01- GATTCATCCTCATAGACTGCATCC
rJMSF052A11- GATTCATCCTCATAGACTGCATCCCTTCCTCGAACAATCCTCGTACATGTTCCTGATTAA
JMFN033B21+ NATTCATCCTCATAGACTGCATCCCATCCTCGAACAATCCTCGTACATGTTCTTGCTCAA
JMFS147F01+ GATTCATCCGCATAGCATGCATCCCTTCCTTGAATAATCCTCGTACATGTTCCAGCTCAA
JMSF046B15+ GATTCATCCTCATAGACTGCATCCCTTCCTCGAACAATCCTCGTACATGTTCCTGATCAA
JMSF052A11+ TCCTCATAGACTGCATCCCTTCCTCGAACAATCCTCGTACATGTTCCTGATTAA
JMSF046P12+ GATTCATCCTCATAGACTGCATCCCTTCCTCGAACAATCCTCGTACATGTTCCTGATTAA
                      ____________________________________________________________
consensus GATTCATCCTCATAGACTGCATCCCTTCCTCGAACAATCCTCGTACATGTTCCTGATTAA
 
. : . : . : . : . : . :
rJMSF052A11- TCCCCAGAGCTCTTGCTAAGTAATCAATGATTGTTAGGGCCAGATTTCTCAGTTCCTCTG
JMFN033B21+ TCCCCAGAGCTTTTCCTAAGTAATCAATGATTGTGAGGGCGAGATTTCTCAGTTCCTCTG
JMFS147F01+ TTCCCAGAGCTTTTGCTAAATATTCAATGATTTTCATGGCCAAATTTCTCAATTCCTCTG
JMSF046B15+ TCCCCAGAGCTTTTGCTAAGTAATCAATGATTGTTAGGGCCAGATTTCTCAGTTCCTCTG
JMSF052A11+ TCCCCAGAGCTCTTGCTAAGTAATCAATGATTGTTAGGGCCAGATTTCTCAGTTCCTCTG
JMSF046P12+ TCCCCAGAGCTCTTGCTAAGTAATCAATGATTGTTAGGTCCAGATTTCTCAGTTCCTCTG
                      ____________________________________________________________
consensus TCCCCAGAGCTCTTGCTAAGTAATCAATGATTGTTAGGGCCAGATTTCTCAGTTCCTCTG
 
. : . : . : . : . : . :
rJMSF052A11- CATACATTTCCATTGTTTCTCTGAATGGCAAAGGGATATTTGGGAATAGATTTGGTTTCC
JMFN033B21+ CAAACATTTCCATTGTTTCTCTGAATGGCAAAGGAATATTTGGGAATAGATTTGGTTTCC
JMFS147F01+ CATACATTTCTACTGTTTCTCTGAACGGCAAAGGGAGATTTGGGAATAAATCTGATTTCC
JMSF046B15+ CATATATTTCCATTGTTTCTCTGAATGGCAAAGGGATATTTGGGAATAGATTTGGTTTCC
JMSF052A11+ CATACATTTCCATTGTTTCTCTGAATGGCAAAGGGATATTTGGGAATAGATTTGGTTTCC
JMSF046P12+ CATACATTTCCATTGTTTCTCTGAATGGCAAAGGGATATTTGGGAATAGATTTGGTTTCC
                      ____________________________________________________________
consensus CATACATTTCCATTGTTTCTCTGAATGGCAAAGGGATATTTGGGAATAGATTTGGTTTCC
 
. : . : . : . : . : . :
rJMSF052A11- TCAAGTAAGTTGGGGAAGTGATGATATAAAACATGTCACACCAGTCAAGTTTTTGCTCAT
JMFN033B21+ TCAAGTAAGTTGGGGAAGTGATAATATAGAACATGTCACACCAGTCAAGTTTTTGCTCAT
JMFS147F01+ TTAAATAAGTTGGGAGAGTCATAATATAAAACATATCAGACCAGTCAAGTTTTTGCTCCT
JMSF046B15+ TCAAGTAAGTTGGGGAAGTGATGATATAAAACATGTCACACCAGTCAAGTTTTTGCTCAT
JMSF052A11+ TCAAGTAAGTTGGGGAAGTGATGATATAAAACATGTCACACCAGTCAAGTTTTTGCTCAT
JMSF046P12+ TCAAGTAAGTTGGGGAAGTGATGATATAAAACATGTCACACCAGTCAAGTTTTTGCTCAT
                      ____________________________________________________________
consensus TCAAGTAAGTTGGGGAAGTGATGATATAAAACATGTCACACCAGTCAAGTTTTTGCTCAT
 
. : . : . : . : . : . :
rJMSF052A11- CAGAATGCACAAAAGCTGGTCCGAAGCCNTGAAGAT
JMFN033B21+ CAGAATGCACAAAAGCTTGTCCGAAGCCTTGAAGATCTCCTGCCTCTTGCCAAAACTTCT
JMFS147F01+ CAGAAATTACAAAAGCATGTCCAAAGCCTTGAAGATCTCCGGGCTCTTGCCAAAGCTTCT
JMSF046B15+ CAGAATGCACAAAAGCTTGTCCGAAGCCTTGAAGATCCCCAGCCTCTTGCCAAAACTTCT
JMSF052A11+ CAGAATGCACAAAAGCTTGTCCGAAGCCTTGAAGATCCCCTGCCTCTTGCCAAAACTTCT
JMSF046P12+ CAGAATGCACAAAAGCTTGTCCGAAGCCTTGAAGATCCCCTGCCTCTTGCCAAAACTTCT
JMSF003G01+ AAAACTTCT
                      ____________________________________________________________
consensus CAGAATGCACAAAAGCTTGTCCGAAGCCTTGAAGATCCCCTGCCTCTTGCCAAAACTTCT
 
. : . : . : . : . : . :
JMFN033B21+ TCTTCTCTTCCATTGGGAGATTGAGGAAATCTTTTGTATCAGTTTTCACTTTTTCAATCA
JMFS147F01+ TCTTCTCTTCCATGGGGAGATGGAAGAAATCTTTTGTGTCAGCTTTCACCTTTTCAACCA
JMSF046B15+ TCTTCTCTTCCATTGGGAGATTGAGGAAATCTTTTGTATCAGTTTTCACTTTTTCAATCA
JMSF052A11+ TCTTCTCTTCCATTGGGAGATTGAGGAAATCTTTTGTATCAGTTTTCACTTTTTCAATCA
JMSF046P12+ TCTTCTCTTCCATTGGGAGATTGAGGAAATCTTTTGTATCAGTTTTCACTTTTTCAATCA
JMSF003G01+ TCTTCTCTTCCATTGGGAGATTGAGGAAATCTTTTGTATCAGTTTTCACTTTTTCAATCA
                      ____________________________________________________________
consensus TCTTCTCTTCCATTGGGAGATTGAGGAAATCTTTTGTATCAGTTTTCACTTTTTCAATCA
 
. : . : . : . : . : . :
JMFN033B21+ ATGAAGAACTCACTCCATGGCTTATTAGCTGAAAAAACCCCCATTCTTTGCACGCAATAT
JMFS147F01+ ATGAAGAACTCACTCCGTGGTTTATTAGCTGAAAAAAACCCCATTCTTTGCTTGCAACAT
JMSF046B15+ ATGAAGAACTCACTCCATGGTTTATTAGCTGAAAAAACCCCCATTCTTTGCATGCAAAAT
JMSF052A11+ GTGAAGAACTCACTCCATGGTTTATTAGCTGAAAAAATCCCCATTCTTTGCATGCAAAAT
JMSF046P12+ GTGAAGAACTCACTCCATGGTTTATTAGCTGAAAAAATCCCCATTCTTTGCATGCAAAAT
JMSF003G01+ GTGAAGAACTCACTCCATGGTTTATTAGCTGAAAAAATCCCCATTCTTTGCATGCAAAAT
                      ____________________________________________________________
consensus GTGAAGAACTCACTCCATGGTTTATTAGCTGAAAAAATCCCCATTCTTTGCATGCAAAAT
 
. : . : . : . : . : . :
JMFN033B21+ CCAGCTTCTTCAGC---TCCTCGGAGTCTCCTTGAAGCAAGTTTGACATGTTGATCACCG
JMFS147F01+ CCATCTTCTTCAGCTC
JMSF046B15+ CCAGCTTCTTCAGCTCATCATCGCATTCTCCTTGGAGCAAGTTTGCCATGTTGATCACCG
JMSF052A11+ CCAGCTTCTTCAGCTCATCATCACATTCTCCTTGGAGCAAGTTTGCCATGTTGATCACCG
JMSF046P12+ CCAGCTTCTTCAGCTCATCATCACATTCTCCTTGGAGCAAGTTTGCCATGTTGATCACCG
JMSF003G01+ CCAGCTTCTTCAGCTCATCATCACATTCTCCTTGGAGCAAGTTTGCCATGTTGATCACCG
                      ____________________________________________________________
consensus CCAGCTTCTTCAGCTCATCATCACATTCTCCTTGGAGCAAGTTTGCCATGTTGATCACCG
 
. : . : . : . : . : . :
JMFN033B21+ GAATTTCTCTCTGCGCCGGTGCCGAAGGGTCAAGATCATCACGAAAGTAACGTGGCGGGA
JMSF046B15+ GAATTTCTTTCTGCGCCGCTGCCGGAGGGTCCAGGTCATGACGAAGGTATCGTGGAGGAA
JMSF052A11+ GAATTTCTTTCTGCGCCGCTGCCGGAGGGTCCAGGTCATGACGAAGGTATCGTGGAGGAA
JMSF046P12+ GAATTTCTTTCTGCGCCGCTGCCGGAGGGTCCAGGTCATGACGAAGGTATCGTGGAGGAA
JMSF003G01+ GAATTTCTTTCTGCGCCGCTGCCGGAGGGTCCAGGTCATGACGAAGGTATCGTGGAGGAA
                      ____________________________________________________________
consensus GAATTTCTTTCTGCGCCGCTGCCGGAGGGTCCAGGTCATGACGAAGGTATCGTGGAGGAA
 
. : . : . : . : . : . :
JMFN033B21+ CGATTTCCGGCGATTGTTTGGCCAATTCTTGAACACAAGGTACT
JMSF046B15+ CGGTTTCCGGCGATTCTTTGGCCAATTCTTTAACGCTAGGTACTAGCATAGATCCTCCAA
JMSF052A11+ TGGTTTCCGGCGATTCTTTGGCCAATTCTTTAACGCTAGGTACTAGCATAGATCCTCCAA
JMSF046P12+ TGGTTTCCGGCGATTCTTTGGCCAATTCTTTAACGCTAGGTACTAGCATAGATCCTCCAA
JMSF003G01+ TGGTTTCCGGCGATTCTTTGGCCAATTCTTTAACGCTAGGTACTAGCATAGATCCTCCAA
                      ____________________________________________________________
consensus TGGTTTCCGGCGATTCTTTGGCCAATTCTTTAACGCTAGGTACTAGCATAGATCCTCCAA
 
. : . : . : . : . : . :
JMSF046B15+ GTTTAGCTAATATACTTCTATCCATGATATGATGCCCAACTCAAGTTTAGTGTAAACTC
JMSF052A11+ GGTTTGCTAATATACTTCTATCCATGATATGATGCCCAACTCAAGTTTAGTGGAAACTC
JMSF046P12+ GGTTTGCTAATATACTTCTATCCATGATATGATGCCCAACTCAAGTTTAGTGGAAACTC
JMSF003G01+ GGTTTGCTAATATACTTCTATCCATGATATGATGCCCAACTCAAGTTTAGTGGAAACTCG
                      ____________________________________________________________
consensus GGTTTGCTAATATACTTCTATCCATGATATGATGCCCAACTCAAGTTTAGTGGAAACTCG