Contig 000560:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003A24Sequence327000560 (3)720024445ref|XP_010261625.1|1e-96PREDICTED: 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like iso
JMSF038F21Sequence626000560 (3)ref|XP_009787166.1|2e-65PREDICTED: 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic-like [Ni817000560 (3)ref|XP_010261625.1|1e-109PREDICTED: 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like iso

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038F21-                                  AAAGAAAAGATGGTGAGACAACACGAGGAGCATAGT
                      ____________________________________________________________
consensus                                     AAAGAAAAGATGGTGAGACAACACGAGGAGCATAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038F21-          AAGAACAAAACGTGCAAATCCTTTGAGTGCTCTTACCATACAACATTCTACAGAATATTA
                      ____________________________________________________________
consensus             AAGAACAAAACGTGCAAATCCTTTGAGTGCTCTTACCATACAACATTCTACAGAATATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038F21-          TAATGTTCAGTTTTATTAAATATTAGCATAAGCAGTATGTCCTCTCATAAATATTTGTTA
                      ____________________________________________________________
consensus             TAATGTTCAGTTTTATTAAATATTAGCATAAGCAGTATGTCCTCTCATAAATATTTGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038F21-          GCACTTTGCCTACAAAATGCAAAATGCCATAGGACATTAGGACCCTATCAAGGGCAGCCG
                      ____________________________________________________________
consensus             GCACTTTGCCTACAAAATGCAAAATGCCATAGGACATTAGGACCCTATCAAGGGCAGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038F21-          TTTGCTTTAGATTTGGACTTGAAACTCATCTCATATTGCCTTCCTGCAGAACATCAATCA
                      ____________________________________________________________
consensus             TTTGCTTTAGATTTGGACTTGAAACTCATCTCATATTGCCTTCCTGCAGAACATCAATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038F21-          TGTCATAAATCCGCTTGTCAGCTTTAGCTTTGACCTTCTTTGCAAGGAAGAGGACGGCAT
                      ____________________________________________________________
consensus             TGTCATAAATCCGCTTGTCAGCTTTAGCTTTGACCTTCTTTGCAAGGAAGAGGACGGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038F21-          CAACAGTACCCTCTGCATATATTGATCTTCCACAAACATTGTGCTGAAATTCAAAAGAGA
                      ____________________________________________________________
consensus             CAACAGTACCCTCTGCATATATTGATCTTCCACAAACATTGTGCTGAAATTCAAAAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038F21-          CCGTGTCATCAGGTGAGGTCAGATGATACAGGTGGAAAGCATGACCAGTTAAGTGTTCTT
                      ____________________________________________________________
consensus             CCGTGTCATCAGGTGAGGTCAGATGATACAGGTGGAAAGCATGACCAGTTAAGTGTTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038F21-          TTGGGACACCCACCATCTCAAGTTGTTGCCTGGGGTCACGTATTTGTTTTACCTTATCTA
                      ____________________________________________________________
consensus             TTGGGACACCCACCATCTCAAGTTGTTGCCTGGGGTCACGTATTTGTTTTACCTTATCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038F21-          AGTCATAGGAGACCCCTAATCTCTGAAAACATGAGATGACAGCCTTGGCAGTTCCAGATA
                      ____________________________________________________________
consensus             AGTCATAGGAGACCCCTAATCTCTGAAAACATGAGATGACAGCCTTGGCAGTTCCAGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038F21-          GGTCCAATTTGCTAGCTTGATGAGACTCCATCACCTGTAGTTGATACCCAGAGAAAGCAC
                      ____________________________________________________________
consensus             GGTCCAATTTGCTAGCTTGATGAGACTCCATCACCTGTAGTTGATACCCAGAGAAAGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038F21-          CTGGAAATTTCTCTGCCATTATTTCCATAGCAGCAAGAAATGCAACAACCTGCTTTCCCA
                      ____________________________________________________________
consensus             CTGGAAATTTCTCTGCCATTATTTCCATAGCAGCAAGAAATGCAACAACCTGCTTTCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038F21-          TTTGCGGGGAGATGACAGCATAGTTATTAGAGTCTGTTACCGTCTTATATAATCTATCCC
                      ____________________________________________________________
consensus             TTTGCGGGGAGATGACAGCATAGTTATTAGAGTCTGTTACCGTCTTATATAATCTATCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038F21-          TGTCTCCCCCAGTAGTTCCCATCACAAAAGGAACTCCAACTTTGCAATACAGCTCTGCAT
JMSF038F21+                     AGTAGTTCCCATCACAAAAGGAACTCCAACTTTGCAATACAGCTCTGCAT
                      ____________________________________________________________
consensus             TGTCTCCCCCAGTAGTTCCCATCACAAAAGGAACTCCAACTTTGCAATACAGCTCTGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038F21-          T                                                           
JMSF038F21+           TATCATTCACAGCAGCAGGAACTGTGTAATCCACCACAATTAAATCTGGATGCTCCTCAA
                      ____________________________________________________________
consensus             TATCATTCACAGCAGCAGGAACTGTGTAATCCACCACAATTAAATCTGGATGCTCCTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038F21+           AGATTGAGGACAGAGTGCTCTCTCTGTCAGAAGGACCGTGAACTGTAATCTGCTTCCCCC
                      ____________________________________________________________
consensus             AGATTGAGGACAGAGTGCTCTCTCTGTCAGAAGGACCGTGAACTGTAATCTGCTTCCCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038F21+           CTACGTCTACTATCTTTCCTGAATCTTCTGGACCACTAAAAGCCACAGGGACAGGCAGAA
                      ____________________________________________________________
consensus             CTACGTCTACTATCTTTCCTGAATCTTCTGGACCACTAAAAGCCACAGGGACAGGCAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038F21+           GACCTGCAGAAATGGCAGCTTCAAGAACTGCCCTTCCCATTTTTCCAGTACAACCATTCA
                      ____________________________________________________________
consensus             GACCTGCAGAAATGGCAGCTTCAAGAACTGCCCTTCCCATTTTTCCAGTACAACCATTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038F21+           CCATTATCGGGAGCGCATTGTTCTGGGATTTAAACGACGGCGTATGCTCGAGGAGCTGGA
JMSF003A24+                                            ACGACGGCGTATGCTCGAGGAGCTGGA
                      ____________________________________________________________
consensus             CCATTATCGGGAGCGCATTGTTCTGGGATTTAAACGACGGCGTATGCTCGAGGAGCTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038F21+           CTGGCACACCGGAATTCGATGAACACATTTTAACCAGAGACTTTTGCCTTTTGATAAGGC
JMSF003A24+           CTGGCACACCGGAATTCGATGAACACATTTTAACCAGAGACTTTTGCCTTTTGATAAGGC
                      ____________________________________________________________
consensus             CTGGCACACCGGAATTCGATGAACACATTTTAACCAGAGACTTTTGCCTTTTGATAAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038F21+           TATATCTAGCTCTCTTGCTCGTATTGGTAAAATTGCAGTCACAAAGTCCTTGGATATTTG
JMSF003A24+           TATATCTAGCTCTCTTGCTCGTATTGGTAAAATTGCAGTCACAAAGTCCTTGGATATTTG
                      ____________________________________________________________
consensus             TATATCTAGCTCTCTTGCTCGTATTGGTAAAATTGCAGTCACAAAGTCCTTGGATATTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038F21+           CCGGCAGTTTAACCACAAACGCCATGGATAACTAATTAGCTACTAATAAGAACAAAGGAA
JMSF003A24+           CCGGCAGTTTAACCACAAACGCCATGGATAACTAATTAGCTACTAATAAGAACAAAGGAA
                      ____________________________________________________________
consensus             CCGGCAGTTTAACCACAAACGCCATGGATAACTAATTAGCTACTAATAAGAACAAAGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038F21+           TACGACTTGTATTCTGAAAATACAAGTTCATAAACACGTGAAAGATAGCTGAGGTAGTGG
JMSF003A24+           TACGACTTGTATTCTGAAAATACAAGTTCATAAACACGTGAAAGATAGCTGAGGTAGTGG
                      ____________________________________________________________
consensus             TACGACTTGTATTCTGAAAATACAAGTTCATAAACACGTGAAAGATAGCTGAGGTAGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038F21+           GAGTACTTTCTGAAGCTGCCGCCTTCTACGGTGAC                         
JMSF003A24+           GAGTACTTTCTGAAGCTGCCGCCTTCTACGGTGACAAGCGGAAGAAGATGGTGAGATTCC
                      ____________________________________________________________
consensus             GAGTACTTTCTGAAGCTGCCGCCTTCTACGGTGACAAGCGGAAGAAGATGGTGAGATTCC