Contig 000559:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002P22Sequence314000559 (3)158021355
JMSF026E21Sequence579000559 (3)ref|XP_010263878.1|4e-40PREDICTED: protein FMP32, mitochondrial isoform X2 [Nelumbo nucifera]736000559 (3)ref|XP_006828917.1|3e-75hypothetical protein AMTR_s00001p00207300 [Amborella trichopoda] gb|ERM96333.1|

Alignment

This contig is upended


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rJMSF026E21-                           ATTAACTACTACAAATTGGAGGAGAATTCTCTCTACCAATGGT
                      ____________________________________________________________
consensus                              ATTAACTACTACAAATTGGAGGAGAATTCTCTCTACCAATGGT
 
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rJMSF026E21-          TTATATTCTGTACTTTAGATGGTACAGCTAAACAATTGACAAGTGAGCTAAAGAGAAAAG
                      ____________________________________________________________
consensus             TTATATTCTGTACTTTAGATGGTACAGCTAAACAATTGACAAGTGAGCTAAAGAGAAAAG
 
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rJMSF026E21-          ACCTTATGAGGTAAAAAGATCCAGGTCTACCTACATTAGCTACTACACTATTTCAAGTGT
                      ____________________________________________________________
consensus             ACCTTATGAGGTAAAAAGATCCAGGTCTACCTACATTAGCTACTACACTATTTCAAGTGT
 
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rJMSF026E21-          GTGGTTCAACTTCCCTTTCTCCAAACAATTCAGCAATAAGAATATCGGAACTCGAATTTC
                      ____________________________________________________________
consensus             GTGGTTCAACTTCCCTTTCTCCAAACAATTCAGCAATAAGAATATCGGAACTCGAATTTC
 
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rJMSF026E21-          TATAAATAATCAATCACTGTAACGCGACATCTCACTTCAGAATGCGGATTACGGCCAAAC
                      ____________________________________________________________
consensus             TATAAATAATCAATCACTGTAACGCGACATCTCACTTCAGAATGCGGATTACGGCCAAAC
 
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rJMSF026E21-          CAACAGCGGATATAGAGACTATACTACCTATGCAATACTTTACAACATCGTATTTTGCTG
                      ____________________________________________________________
consensus             CAACAGCGGATATAGAGACTATACTACCTATGCAATACTTTACAACATCGTATTTTGCTG
 
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rJMSF026E21-          CCTCCAGCTGTGCCCTCAATGAATGAATTTCTCGATCAAGTTTGTTATCGAGGTTGGAAA
                      ____________________________________________________________
consensus             CCTCCAGCTGTGCCCTCAATGAATGAATTTCTCGATCAAGTTTGTTATCGAGGTTGGAAA
 
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rJMSF026E21-          TTTCCTGGCACTGGTTAGCTAACTCGTCCCGGATTCTCCCCCTCTCGAGATTCTGATCCA
                      ____________________________________________________________
consensus             TTTCCTGGCACTGGTTAGCTAACTCGTCCCGGATTCTCCCCCTCTCGAGATTCTGATCCA
 
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rJMSF026E21-          GCCGATTGCCAGCAGTGACTTTGTCGATTTCATACCTCAATTCACTGCGCATCTTTTCAA
                      ____________________________________________________________
consensus             GCCGATTGCCAGCAGTGACTTTGTCGATTTCATACCTCAATTCACTGCGCATCTTTTCAA
 
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rJMSF026E21-          TATCAGTCCTGAGCTTTTCAGTCTCACGTTGCAACAAAGAGAAGTGGTTTTCCTGAGAGC
JMSF026E21+                              AGTCTCACGTTGCAACAAAGAGAAGTGGTTTTCCTGAGAGC
                      ____________________________________________________________
consensus             TATCAGTCCTGAGCTTTTCAGTCTCACGTTGCAACAAAGAGAAGTGGTTTTCCTGAGAGC
 
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rJMSF026E21-          TCTGAACTTCAGATTTGAATTTAGACAAATTTGTTTCATGAATCATCTCAATTTTCTGGG
JMSF026E21+           TCTGAACTTCAGATTTGAATTTAGACAAATTTGTTTCATGAATCATCTCAATTTTCTGGG
                      ____________________________________________________________
consensus             TCTGAACTTCAGATTTGAATTTAGACAAATTTGTTTCATGAATCATCTCAATTTTCTGGG
 
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rJMSF026E21-          ATTCAGTTTTTGAAACATAGGAGTTAGCTACATGTTCCAAGCTATCGTNCAAAACATCCT
JMSF026E21+           ATTCAGTTTTTGAAACATAGGAGTTAGCTACATGTTCCAAGCTATCGTTCAAAACATCCT
                      ____________________________________________________________
consensus             ATTCAGTTTTTGAAACATAGGAGTTAGCTACATGTTCCAAGCTATCGTTCAAAACATCCT
 
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rJMSF026E21-          TCAAAGCTGCCGNGAGGGCCTCGGCTACCTTGG                           
JMSF026E21+           TCAAAGCTGCCGTGAGGGCCTCGGCTACCTTGGATGGCACGCCTTGAGATTCCAATCTCC
                      ____________________________________________________________
consensus             TCAAAGCTGCCGTGAGGGCCTCGGCTACCTTGGATGGCACGCCTTGAGATTCCAATCTCC
 
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JMSF026E21+           TCACCAGAGCAAGAGTATCGACGATAAACAAGTGGTTGGAGGTGGAACCAGAGTGCTGAG
                      ____________________________________________________________
consensus             TCACCAGAGCAAGAGTATCGACGATAAACAAGTGGTTGGAGGTGGAACCAGAGTGCTGAG
 
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JMSF026E21+           AAATGTTCCGGATGCATTGGAATCGGGTTGGCCCGCCCAACCTGGTTCCCAAATGCACAC
                      ____________________________________________________________
consensus             AAATGTTCCGGATGCATTGGAATCGGGTTGGCCCGCCCAACCTGGTTCCCAAATGCACAC
 
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JMSF026E21+           CCATGCGCTTCGCCGCATATGCGGCCATCTGACGGCGATTCACCACGCTCAGCCGGAAAT
                      ____________________________________________________________
consensus             CCATGCGCTTCGCCGCATATGCGGCCATCTGACGGCGATTCACCACGCTCAGCCGGAAAT
 
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JMSF026E21+           CAAAGAAAAACGAACCGCCAGCAGTTCAATTATCAATTATCTATGAAATGAAATGTTCAC
JMSF002P22+                AAAAACGAACCGCCAGTAGTTCAATTATCAATTATCTATGAAATGAAATGTTCAC
                      ____________________________________________________________
consensus             CAAAGAAAAACGAACCGCCAGTAGTTCAATTATCAATTATCTATGAAATGAAATGTTCAC
 
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JMSF026E21+           CGATTGTGTTGTCATGGCATATATAGTTAATAGTTGGTATCAATTAGCGGAGAACATGGT
JMSF002P22+           CGATTGTGTTGTCATGGCATATATAGTTAATAGTTGGTATCAATTAGCGGAGAACATGGT
                      ____________________________________________________________
consensus             CGATTGTGTTGTCATGGCATATATAGTTAATAGTTGGTATCAATTAGCGGAGAACATGGT
 
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JMSF026E21+           AAAACTTTTCTCGGAGATCGCGAAAATTTTGTTATTTTTTATTATTTAGATTAGATT   
JMSF002P22+           AAAACTTTTCTCGGAGATCGCGAAAATTTTGTTATTTTTTATTATTTAGATTAGATTAGA
                      ____________________________________________________________
consensus             AAAACTTTTCTCGGAGATCGCGAAAATTTTGTTATTTTTTATTATTTAGATTAGATTAGA
 
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JMSF002P22+           TTTTTTTCTACCCATTCCATGAGCTTTCTTATTTTGACGGTGGCTGAGGCCTGACTTCTG
                      ____________________________________________________________
consensus             TTTTTTTCTACCCATTCCATGAGCTTTCTTATTTTGACGGTGGCTGAGGCCTGACTTCTG
 
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JMSF002P22+           AGAGGCGTGAATGGGAAACTGAAACCTGGGCGGGAGGGTGCAAAAAAAATTCGCCCACCC
                      ____________________________________________________________
consensus             AGAGGCGTGAATGGGAAACTGAAACCTGGGCGGGAGGGTGCAAAAAAAATTCGCCCACCC