Contig 000527:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021N15Sequence613004546 (2)ref|XP_009613975.1|4e-29PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Ni719000527 (3)ref|XP_009786138.1|3e-47PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Ni
JMFN029D20Sequence627000527 (3)ref|XP_009786138.1|1e-82PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Ni
JMFS158E07Sequence514000527 (3)ref|XP_009786138.1|4e-52PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Ni

Alignment

This contig is upended


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rJMFF021N15-          TAACTCGTCTGGAAATGCAAACAGTGTCCGACAACACTCGTACTAAGCCTGCAAGCAAGA
                      ____________________________________________________________
consensus             TAACTCGTCTGGAAATGCAAACAGTGTCCGACAACACTCGTACTAAGCCTGCAAGCAAGA
 
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rJMFF021N15-          ATAACTTCAGCAATTCATCCAACACCAAGACTAAATAAACTTCATATAATAGAGATGAAT
                      ____________________________________________________________
consensus             ATAACTTCAGCAATTCATCCAACACCAAGACTAAATAAACTTCATATAATAGAGATGAAT
 
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rJMFF021N15-          AAAAAGGCAGGCCTATGTGCTTTTAGTGTAATGTAGGTAGCAAAGGAAAAACAAATGCAG
                      ____________________________________________________________
consensus             AAAAAGGCAGGCCTATGTGCTTTTAGTGTAATGTAGGTAGCAAAGGAAAAACAAATGCAG
 
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rJMFF021N15-          CAACAGGGATTTTCCCACTTTTGGTAAAATCCCGTTATCACAAACGTAAGCCGTAGGTAG
                      ____________________________________________________________
consensus             CAACAGGGATTTTCCCACTTTTGGTAAAATCCCGTTATCACAAACGTAAGCCGTAGGTAG
 
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rJMFF021N15-          TGCGCCGTAACAATAAAAGCAGAGAGTATTTATTTGTACACTCAAACAGCCCTTCCAACA
JMFN029D20+                                            TTGTACACTCAAACAGCCCTTCCAACA
                      ____________________________________________________________
consensus             TGCGCCGTAACAATAAAAGCAGAGAGTATTTATTTGTACACTCAAACAGCCCTTCCAACA
 
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rJMFF021N15-          AATCAGCGATGATGCCTTCCCTGAAAGCCGCCTTTATTCTTGGCAAAGAAGGCGTTTTTC
JMFN029D20+           AATCAGCGATGATGCCTTCCGTGAAAGCCGCCTTTATTCTTGGCAAAGAAGGCGTTTTTC
                      ____________________________________________________________
consensus             AATCAGCGATGATGCCTTCCGTGAAAGCCGCCTTTATTCTTGGCAAAGAAGGCGTTTTTC
 
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rJMFF021N15-          GGTTTTGGAATCTCATGAATGTCCATCACTTGTATTGTCCTTTGCTTTTTAGCATTTTGT
JMFN029D20+           GGTTTTGGAATCTCATGAATGTCCATCACTTGTATTGTCCTTTGCTTTTTAGCATTTTGT
JMFS158E07+                                     CACTTGTATTGTCCTTTGCTTTTTAGCATTTTGT
                      ____________________________________________________________
consensus             GGTTTTGGAATCTCATGAATGTCCATCACTTGTATTGTCCTTTGCTTTTTAGCATTTTGT
 
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rJMFF021N15-          GCTTCTTGGTAGTTCTCCTGAAGCCTCCTCCTTGCTGAATTTAGCTTCTCCATATCCATC
JMFN029D20+           GCTTCTTGGTAGTTCTCCTGAAGCCTCCTCCTTGCTGAATTTAGCTTCTCCATATCCATC
JMFS158E07+           GCTTCTTGGTAGTTCTCCTGAAGCCTCCTCCTTGCTGAATTTAGCTTCTCCATATCCATC
                      ____________________________________________________________
consensus             GCTTCTTGGTAGTTCTCCTGAAGCCTCCTCCTTGCTGAATTTAGCTTCTCCATATCCATC
 
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rJMFF021N15-          ACTGATTCCCTCGGAGGCCTGCTTGGGGGAGGAGCTGAAGCGGGCTTAGGAGCAGATTGA
JMFN029D20+           ACTGATTCCCTCGGAGGCCTGCTTGGGGGAGGAGCTGAAGCGGGCTTAGGAGCAGATTGA
JMFS158E07+           ACTGATTCCCTCGGAGGCCTGCTTGGGGGAGGAGCTGAAGCGGGCTTAGGAGCAGATTGA
                      ____________________________________________________________
consensus             ACTGATTCCCTCGGAGGCCTGCTTGGGGGAGGAGCTGAAGCGGGCTTAGGAGCAGATTGA
 
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rJMFF021N15-          AGTGGTCTGGGAGGTGCTTCATTCCGAGGAAACGATTTTGGCTTCTGCTCTGGTTCTGAG
JMFN029D20+           AGTGGTCTGGGAGGTGCTTCATTCCGAGGAAACGATTTTGGCTTCTGCTCTGGTTCTGAG
JMFS158E07+           AGTGGTCTGGGAGGTGCTTCATTCCGAGGAAACGATTTTGGCTTCTGCTCTGGTTCTGAG
                      ____________________________________________________________
consensus             AGTGGTCTGGGAGGTGCTTCATTCCGAGGAAACGATTTTGGCTTCTGCTCTGGTTCTGAG
 
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rJMFF021N15-          TTATTCCGGTCTGAGCTTGAACTCCCATTTCTAGGATTTGGAGAATACCCAAAATCAGGT
JMFN029D20+           TTATTCCGGTCTGAGCTTGAACTCCCATTTCTAGGATTTGGAGAATACCCAAAATCAGGT
JMFS158E07+           TTATTCCGGTCTGAGCTTGAACTCCCATTTCTAGGATTTGGAGAATACCCAAAATCAGGT
                      ____________________________________________________________
consensus             TTATTCCGGTCTGAGCTTGAACTCCCATTTCTAGGATTTGGAGAATACCCAAAATCAGGT
 
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rJMFF021N15-          ACCTGGTGATGACCATTGTGCTGATTTTTATGTAAGTTCTGCTGGGGTGAGTCTCCA   
JMFN029D20+           ACCTGGTGATGACCATTGTGCTGATTTTTATGTAAGTTCTGCTGGGGTGAGTCTCCATCA
JMFS158E07+           ACCTGGTGATGACCATTGTGCTGATTTTTATGTAAGTTCTGCTGGGGTGAGTCTCCACCA
                      ____________________________________________________________
consensus             ACCTGGTGATGACCATTGTGCTGATTTTTATGTAAGTTCTGCTGGGGTGAGTCTCCATCA
 
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JMFN029D20+           GCAATGAGATTAGAAGATGCTTGTTCAGGTTGGTTGAGCCTAACCCAATCATCTACAGTT
JMFS158E07+           CCAATGAGATTAGAAGATGCTTGTTCAGGTTGGTTGAGCCTAACCCAATCATCTACAGTT
                      ____________________________________________________________
consensus             GCAATGAGATTAGAAGATGCTTGTTCAGGTTGGTTGAGCCTAACCCAATCATCTACAGTT
 
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JMFN029D20+           TCTTTCCATTTTCTGACTAGCTGCTTCACCAATCTCCTAACTTCATTTGATGGATTCTTC
JMFS158E07+           TCTTTCCATTTTCTGACTAGCTGCTTCACCAATCTCCTAACTTCATTTGATGGATTCTTC
                      ____________________________________________________________
consensus             TCTTTCCATTTTCTGACTAGCTGCTTCACCAATCTCCTAACTTCATTTGATGGATTCTTC
 
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JMFN029D20+           CTCAATCGA                                                   
JMFS158E07+           CTCAATCGAATCTCATGAATGTCCATCACTTGTATTGTCCTTTGCTTTTTAGCATTTTGT
                      ____________________________________________________________
consensus             CTCAATCGAATCTCATGAATGTCCATCACTTGTATTGTCCTTTGCTTTTTAGCATTTTGT