Contig 000494:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS123E02Sequence575000494 (4)ref|XP_009767344.1|2e-34PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180
JMFS124C08Sequence566000494 (4)ref|XP_009767344.1|4e-33PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180
JMFS132B10Sequence625000494 (4)ref|XP_009767344.1|2e-43PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180
JMSF029J21Sequence641000494 (4)ref|XP_009767344.1|2e-53PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180489022574ref|XP_009587870.1|1e-41PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF029J21+ CCGGAGAACGAGTTGGAGGAGAGATCCAGGAACC
                      ____________________________________________________________
consensus CCGGAGAACGAGTTGGAGGAGAGATCCAGGAACC
 
. : . : . : . : . : . :
JMSF029J21+ GGAGGNTGCGAGGAACACCGCCGGGGATTCCACCGGACATAAAGTTCCGAGCGACGTTGA
JMFS132B10+ GACATAAAGTTCCGAGCGACGTTGA
                      ____________________________________________________________
consensus GGAGGNTGCGAGGAACACCGCCGGGGATTCCACCGGACATAAAGTTCCGAGCGACGTTGA
 
. : . : . : . : . : . :
JMSF029J21+ GAACTTGCAGATTCGTCAGGTTCGAAATCCCCGGCGGGAGGTCGCCGGAGAGCGAGTTGT
JMFS132B10+ GAACTTGCAGATTCGTCAGGTTCGAAATCCCCGGCGGGAGGTCGCCGGAGAGCGAGTTGT
JMFS124C08+ CGGGAGGTCGCCGGAGAGCGAGTTGT
JMFS123E02+ AATCCCCGGCGGGAGGTCGCCGGAGAGCGAGTTGT
                      ____________________________________________________________
consensus GAACTTGCAGATTCGTCAGGTTCGAAATCCCCGGCGGGAGGTCGCCGGAGAGCGAGTTGT
 
. : . : . : . : . : . :
JMSF029J21+ TATGCAGGTAAACCGCACGCAACAGAGAGCACCGCGACAGCCCCCGCGGCACGGAGCCGT
JMFS132B10+ TATGCAGGTAAACCGCACGCAACAGAGAGCACCGCGACAGCCCCCGCGGCACGGAGCCGT
JMFS124C08+ TATGCAGGTAAACCGCACGCAACAGAGAGCACCGCGACAGCCCCCGCGGCACGGAGCCGT
JMFS123E02+ TATGCAGGTAAACCGCACGCAACAGAGAGCACCGCGACAGCCCCCGCGGCACGGAGCCGT
                      ____________________________________________________________
consensus TATGCAGGTAAACCGCACGCAACAGAGAGCACCGCGACAGCCCCCGCGGCACGGAGCCGT
 
. : . : . : . : . : . :
JMSF029J21+ TGAGGTTGTTGGAATGCAGGCTTAACCTGCGCAGCTGGCGCAGGTTAGCAATCCGTTCAG
JMFS132B10+ TGAGGTTGTTGGAATGCAGGCTTAACCTGCGCAGCTGGCGCAGGTTAGCAATCCGTTCAG
JMFS124C08+ TGAGGTTGTTGGAATGCAGGCTTAACCTGCGCAGCTGGCGCAGGTTAGCAATCCGTTCAG
JMFS123E02+ TGAGGTTGTTGGAATGCAGGCTTAACCTGCGCAGCTGGCGCAGGTTAGCAATCCGTTCAG
                      ____________________________________________________________
consensus TGAGGTTGTTGGAATGCAGGCTTAACCTGCGCAGCTGGCGCAGGTTAGCAATCCGTTCAG
 
. : . : . : . : . : . :
JMSF029J21+ TTATCCGTCCCCGAAGCTGAAGGCGCGGCAGGCGGAGCTCAACAACGCGGCCGCCGTCAC
JMFS132B10+ TTATCCGTCCCCGAAGCTGAAGGCGCGGCAGGCGGAGCTCAACAACGCGGCCGCCGTCAC
JMFS124C08+ TTATCCGTCCCCGAAGCTGAAGGCGCGGCAGGCGGAGCTCAACAACGCGGCCGCCGTCAC
JMFS123E02+ TTATCCGTCCCCGAAGCTGAAGGCGCGGCAGGCGGAGCTCAACAACGCGGCCGCCGTCAC
                      ____________________________________________________________
consensus TTATCCGTCCCCGAAGCTGAAGGCGCGGCAGGCGGAGCTCAACAACGCGGCCGCCGTCAC
 
. : . : . : . : . : . :
JMSF029J21+ ACCGAATCCCAACCCAGTCACACGGAGCCGACGGCGTGGAAGCATCCCAGCCGTCCAATG
JMFS132B10+ ACCGAATCCCAACCCAGTCACACGGAGCCGACGGCGTGGAAGCATCCCAGCCGTCCAATG
JMFS124C08+ ACCGAATCCCAACCCAGTCACACGGAGCCGACGGCGTGGAAGCATCCCAGCCGTCCAATG
JMFS123E02+ ACCGAATCCCAACCCAGTCACACGGAGCCGACGGCGTGGAAGCATCCCAGCCGTCCAATG
                      ____________________________________________________________
consensus ACCGAATCCCAACCCAGTCACACGGAGCCGACGGCGTGGAAGCATCCCAGCCGTCCAATG
 
. : . : . : . : . : . :
JMSF029J21+ CGCCAAGCGGATCTTCCAAGTTCCCCTTGAACGACAGCAACGCCTCAACCTCCATCTCCT
JMFS132B10+ CGCCAAGCGGATCTTCCAAGTTCCCCTTGAACGACAGCAACGCCTCAACCTCCATCTCCT
JMFS124C08+ CGCCAAGCGGATCTTCCAAGTTCCCCTTGAACGACAGCAACGCCTCAACCTCCATCTCCT
JMFS123E02+ CGCCAAGCGGATCTTCCAAGTTCCCCTTGAACGACAGCAACGCCTCAACCTCCATCTCCT
                      ____________________________________________________________
consensus CGCCAAGCGGATCTTCCAAGTTCCCCTTGAACGACAGCAACGCCTCAACCTCCATCTCCT
 
. : . : . : . : . : . :
JMSF029J21+ CCGGCGTCGGCGACGCCGCAGTCGCAAAAGCAGAGGAAATTAACAACATATGCAGAAATA
JMFS132B10+ CCGGCGTCGGCGACGCCGCAGTCGCAAAAGCAGAGGAAATTAACAACATATGCAGAAATA
JMFS124C08+ CCGGCGTCGGCGACGCCGCAGTCGCAAAAGCAGAGGAAATTAACAACATATGCAGAAATA
JMFS123E02+ CCGGCGTCGGCGACGCCGCAGTCGCAAAAGCAGAGGAAATTAACAACATATGCAGAAATA
                      ____________________________________________________________
consensus CCGGCGTCGGCGACGCCGCAGTCGCAAAAGCAGAGGAAATTAACAACATATGCAGAAATA
 
. : . : . : . : . : . :
JMSF029J21+ GCGCCACCGCTGTCGCGGCGGCGGCGAAGAAGGAAAAAGTAGCCGTTGACATGAGAGCGG
JMFS132B10+ GCGCCACCGCTGTCGCGGCGGCGGCGAAGAAGGAAAAAGTAGCCGTTGACATGAGAGCGG
JMFS124C08+ GCGCCACCGCTGTCGCGGCGGCGGCGAAGAAGGAAAAAGTAGCCGTTGACATGAGAGCGG
JMFS123E02+ GCGCCACCGCTGTCGCGGCGGCGGCGAAGAAGGAAAAAGTAGCCGTTGACATGAGAGCGG
                      ____________________________________________________________
consensus GCGCCACCGCTGTCGCGGCGGCGGCGAAGAAGGAAAAAGTAGCCGTTGACATGAGAGCGG
 
. : . : . : . : . : . :
JMSF029J21+ GGGTGAAGGCTATGGGAGCGTATTGCAGACTGAGAAGGAGAAGAAAGATGACAAGATCGA
JMFS132B10+ GGGTGAAGGCTATGGGAGCGTATTGCAGACTGAGAAGGAGAAGAAAGATGACAAGATCGA
JMFS124C08+ GGGTGAAGGCTATGGGAGCGTATTGCAGACTGAGAAGGAGAAGAAAGATGACAAGATCGA
JMFS123E02+ GGGTGAAGGCTATGGGAGCGTATTGCAGACTGAGAAGGAGAAGAAAGATGACAAGATCGA
                      ____________________________________________________________
consensus GGGTGAAGGCTATGGGAGCGTATTGCAGACTGAGAAGGAGAAGAAAGATGACAAGATCGA
 
. : . : . : . : . : . :
JMSF029J21+ GGCCAT
JMFS132B10+ GGCCATGTGGCAATGGTGAAGTGCGTTTAGTTTTTGTAAGTATTGTAGGGTTCCGTTTTC
JMFS124C08+ GGCCATGTGGCAATGGTGAAGTGCGTTTAGTTTTTGTAAGTATTGTAGGGTTCCGTTTTC
JMFS123E02+ GGCCATGTGGCAATGGTGAAGTGCGTTTAGTTTTTGTAAGTATTGTAGGGTTCCGTTTTC
                      ____________________________________________________________
consensus GGCCATGTGGCAATGGTGAAGTGCGTTTAGTTTTTGTAAGTATTGTAGGGTTCCGTTTTC